data_2O1V # _model_server_result.job_id pY8JjAh2t75jiLnj8kVTMA _model_server_result.datetime_utc '2025-02-05 07:48:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":756}' # _entry.id 2O1V # _exptl.entry_id 2O1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O1V _cell.length_a 99.08 _cell.length_b 108.85 _cell.length_c 148.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 56 A ASN 107 1_555 C MG MG . A MG 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 E O2A ADP . A ADP 301 1_555 C MG MG . A MG 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 C MG MG . A MG 755 1_555 I O HOH . A HOH 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc4 H O1B ADP . B ADP 302 1_555 F MG MG . B MG 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc5 H O2A ADP . B ADP 302 1_555 F MG MG . B MG 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc6 F MG MG . B MG 755 1_555 J O HOH . B HOH 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2O1V _atom_sites.fract_transf_matrix[1][1] 0.010093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 755 2 MG MG . D 2 MG A 1 756 4 MG MG . E 3 ADP A 1 301 1 ADP ADP . F 2 MG B 1 755 1 MG MG . G 2 MG B 1 756 3 MG MG . H 3 ADP B 1 302 2 ADP ADP . I 4 HOH A 1 757 1 HOH HOH . I 4 HOH A 2 758 4 HOH HOH . I 4 HOH A 3 759 5 HOH HOH . I 4 HOH A 4 760 6 HOH HOH . I 4 HOH A 5 761 7 HOH HOH . I 4 HOH A 6 762 9 HOH HOH . I 4 HOH A 7 763 12 HOH HOH . I 4 HOH A 8 764 15 HOH HOH . I 4 HOH A 9 765 16 HOH HOH . I 4 HOH A 10 766 18 HOH HOH . I 4 HOH A 11 767 21 HOH HOH . I 4 HOH A 12 768 22 HOH HOH . I 4 HOH A 13 769 24 HOH HOH . I 4 HOH A 14 770 31 HOH HOH . I 4 HOH A 15 771 35 HOH HOH . I 4 HOH A 16 772 36 HOH HOH . I 4 HOH A 17 773 37 HOH HOH . I 4 HOH A 18 774 39 HOH HOH . I 4 HOH A 19 775 40 HOH HOH . I 4 HOH A 20 776 41 HOH HOH . I 4 HOH A 21 777 42 HOH HOH . I 4 HOH A 22 778 44 HOH HOH . I 4 HOH A 23 779 46 HOH HOH . I 4 HOH A 24 780 49 HOH HOH . I 4 HOH A 25 781 53 HOH HOH . I 4 HOH A 26 782 57 HOH HOH . I 4 HOH A 27 783 59 HOH HOH . I 4 HOH A 28 784 60 HOH HOH . I 4 HOH A 29 785 61 HOH HOH . I 4 HOH A 30 786 62 HOH HOH . I 4 HOH A 31 787 63 HOH HOH . I 4 HOH A 32 788 65 HOH HOH . I 4 HOH A 33 789 72 HOH HOH . I 4 HOH A 34 790 74 HOH HOH . I 4 HOH A 35 791 75 HOH HOH . I 4 HOH A 36 792 78 HOH HOH . I 4 HOH A 37 793 79 HOH HOH . I 4 HOH A 38 794 80 HOH HOH . I 4 HOH A 39 795 81 HOH HOH . I 4 HOH A 40 796 83 HOH HOH . I 4 HOH A 41 797 85 HOH HOH . I 4 HOH A 42 798 87 HOH HOH . I 4 HOH A 43 799 89 HOH HOH . I 4 HOH A 44 800 90 HOH HOH . I 4 HOH A 45 801 91 HOH HOH . I 4 HOH A 46 802 92 HOH HOH . I 4 HOH A 47 803 95 HOH HOH . I 4 HOH A 48 804 96 HOH HOH . I 4 HOH A 49 805 99 HOH HOH . I 4 HOH A 50 806 100 HOH HOH . I 4 HOH A 51 807 101 HOH HOH . I 4 HOH A 52 808 103 HOH HOH . I 4 HOH A 53 809 105 HOH HOH . I 4 HOH A 54 810 108 HOH HOH . I 4 HOH A 55 811 109 HOH HOH . I 4 HOH A 56 812 110 HOH HOH . I 4 HOH A 57 813 111 HOH HOH . I 4 HOH A 58 814 113 HOH HOH . I 4 HOH A 59 815 115 HOH HOH . I 4 HOH A 60 816 116 HOH HOH . I 4 HOH A 61 817 117 HOH HOH . I 4 HOH A 62 818 118 HOH HOH . I 4 HOH A 63 819 119 HOH HOH . I 4 HOH A 64 820 122 HOH HOH . I 4 HOH A 65 821 123 HOH HOH . I 4 HOH A 66 822 125 HOH HOH . I 4 HOH A 67 823 126 HOH HOH . I 4 HOH A 68 824 130 HOH HOH . I 4 HOH A 69 825 131 HOH HOH . I 4 HOH A 70 826 132 HOH HOH . I 4 HOH A 71 827 133 HOH HOH . I 4 HOH A 72 828 135 HOH HOH . I 4 HOH A 73 829 136 HOH HOH . I 4 HOH A 74 830 137 HOH HOH . I 4 HOH A 75 831 138 HOH HOH . I 4 HOH A 76 832 139 HOH HOH . I 4 HOH A 77 833 140 HOH HOH . I 4 HOH A 78 834 143 HOH HOH . I 4 HOH A 79 835 146 HOH HOH . I 4 HOH A 80 836 148 HOH HOH . I 4 HOH A 81 837 150 HOH HOH . I 4 HOH A 82 838 151 HOH HOH . I 4 HOH A 83 839 152 HOH HOH . I 4 HOH A 84 840 153 HOH HOH . I 4 HOH A 85 841 154 HOH HOH . I 4 HOH A 86 842 157 HOH HOH . I 4 HOH A 87 843 158 HOH HOH . I 4 HOH A 88 844 160 HOH HOH . I 4 HOH A 89 845 161 HOH HOH . I 4 HOH A 90 846 163 HOH HOH . I 4 HOH A 91 847 164 HOH HOH . I 4 HOH A 92 848 165 HOH HOH . I 4 HOH A 93 849 166 HOH HOH . I 4 HOH A 94 850 168 HOH HOH . I 4 HOH A 95 851 169 HOH HOH . I 4 HOH A 96 852 171 HOH HOH . I 4 HOH A 97 853 172 HOH HOH . I 4 HOH A 98 854 176 HOH HOH . I 4 HOH A 99 855 178 HOH HOH . I 4 HOH A 100 856 179 HOH HOH . I 4 HOH A 101 857 181 HOH HOH . I 4 HOH A 102 858 184 HOH HOH . I 4 HOH A 103 859 185 HOH HOH . I 4 HOH A 104 860 187 HOH HOH . I 4 HOH A 105 861 188 HOH HOH . I 4 HOH A 106 862 191 HOH HOH . I 4 HOH A 107 863 193 HOH HOH . I 4 HOH A 108 864 195 HOH HOH . I 4 HOH A 109 865 201 HOH HOH . I 4 HOH A 110 866 202 HOH HOH . I 4 HOH A 111 867 204 HOH HOH . I 4 HOH A 112 868 206 HOH HOH . I 4 HOH A 113 869 209 HOH HOH . I 4 HOH A 114 870 210 HOH HOH . I 4 HOH A 115 871 212 HOH HOH . I 4 HOH A 116 872 215 HOH HOH . I 4 HOH A 117 873 217 HOH HOH . I 4 HOH A 118 874 218 HOH HOH . I 4 HOH A 119 875 219 HOH HOH . I 4 HOH A 120 876 220 HOH HOH . I 4 HOH A 121 877 221 HOH HOH . I 4 HOH A 122 878 222 HOH HOH . I 4 HOH A 123 879 223 HOH HOH . I 4 HOH A 124 880 224 HOH HOH . I 4 HOH A 125 881 225 HOH HOH . I 4 HOH A 126 882 237 HOH HOH . I 4 HOH A 127 883 240 HOH HOH . I 4 HOH A 128 884 246 HOH HOH . I 4 HOH A 129 885 252 HOH HOH . I 4 HOH A 130 886 253 HOH HOH . I 4 HOH A 131 887 254 HOH HOH . I 4 HOH A 132 888 255 HOH HOH . I 4 HOH A 133 889 258 HOH HOH . I 4 HOH A 134 890 259 HOH HOH . I 4 HOH A 135 891 260 HOH HOH . J 4 HOH B 1 757 2 HOH HOH . J 4 HOH B 2 758 3 HOH HOH . J 4 HOH B 3 759 8 HOH HOH . J 4 HOH B 4 760 10 HOH HOH . J 4 HOH B 5 761 11 HOH HOH . J 4 HOH B 6 762 13 HOH HOH . J 4 HOH B 7 763 14 HOH HOH . J 4 HOH B 8 764 17 HOH HOH . J 4 HOH B 9 765 19 HOH HOH . J 4 HOH B 10 766 20 HOH HOH . J 4 HOH B 11 767 23 HOH HOH . J 4 HOH B 12 768 25 HOH HOH . J 4 HOH B 13 769 26 HOH HOH . J 4 HOH B 14 770 27 HOH HOH . J 4 HOH B 15 771 28 HOH HOH . J 4 HOH B 16 772 29 HOH HOH . J 4 HOH B 17 773 30 HOH HOH . J 4 HOH B 18 774 32 HOH HOH . J 4 HOH B 19 775 33 HOH HOH . J 4 HOH B 20 776 34 HOH HOH . J 4 HOH B 21 777 38 HOH HOH . J 4 HOH B 22 778 43 HOH HOH . J 4 HOH B 23 779 45 HOH HOH . J 4 HOH B 24 780 47 HOH HOH . J 4 HOH B 25 781 48 HOH HOH . J 4 HOH B 26 782 50 HOH HOH . J 4 HOH B 27 783 51 HOH HOH . J 4 HOH B 28 784 52 HOH HOH . J 4 HOH B 29 785 54 HOH HOH . J 4 HOH B 30 786 55 HOH HOH . J 4 HOH B 31 787 56 HOH HOH . J 4 HOH B 32 788 58 HOH HOH . J 4 HOH B 33 789 64 HOH HOH . J 4 HOH B 34 790 66 HOH HOH . J 4 HOH B 35 791 67 HOH HOH . J 4 HOH B 36 792 68 HOH HOH . J 4 HOH B 37 793 69 HOH HOH . J 4 HOH B 38 794 70 HOH HOH . J 4 HOH B 39 795 71 HOH HOH . J 4 HOH B 40 796 73 HOH HOH . J 4 HOH B 41 797 76 HOH HOH . J 4 HOH B 42 798 77 HOH HOH . J 4 HOH B 43 799 82 HOH HOH . J 4 HOH B 44 800 84 HOH HOH . J 4 HOH B 45 801 86 HOH HOH . J 4 HOH B 46 802 88 HOH HOH . J 4 HOH B 47 803 93 HOH HOH . J 4 HOH B 48 804 94 HOH HOH . J 4 HOH B 49 805 97 HOH HOH . J 4 HOH B 50 806 98 HOH HOH . J 4 HOH B 51 807 102 HOH HOH . J 4 HOH B 52 808 104 HOH HOH . J 4 HOH B 53 809 106 HOH HOH . J 4 HOH B 54 810 107 HOH HOH . J 4 HOH B 55 811 112 HOH HOH . J 4 HOH B 56 812 114 HOH HOH . J 4 HOH B 57 813 120 HOH HOH . J 4 HOH B 58 814 121 HOH HOH . J 4 HOH B 59 815 124 HOH HOH . J 4 HOH B 60 816 127 HOH HOH . J 4 HOH B 61 817 128 HOH HOH . J 4 HOH B 62 818 129 HOH HOH . J 4 HOH B 63 819 134 HOH HOH . J 4 HOH B 64 820 141 HOH HOH . J 4 HOH B 65 821 142 HOH HOH . J 4 HOH B 66 822 144 HOH HOH . J 4 HOH B 67 823 145 HOH HOH . J 4 HOH B 68 824 147 HOH HOH . J 4 HOH B 69 825 149 HOH HOH . J 4 HOH B 70 826 155 HOH HOH . J 4 HOH B 71 827 156 HOH HOH . J 4 HOH B 72 828 159 HOH HOH . J 4 HOH B 73 829 162 HOH HOH . J 4 HOH B 74 830 167 HOH HOH . J 4 HOH B 75 831 170 HOH HOH . J 4 HOH B 76 832 173 HOH HOH . J 4 HOH B 77 833 174 HOH HOH . J 4 HOH B 78 834 175 HOH HOH . J 4 HOH B 79 835 177 HOH HOH . J 4 HOH B 80 836 180 HOH HOH . J 4 HOH B 81 837 182 HOH HOH . J 4 HOH B 82 838 183 HOH HOH . J 4 HOH B 83 839 186 HOH HOH . J 4 HOH B 84 840 189 HOH HOH . J 4 HOH B 85 841 190 HOH HOH . J 4 HOH B 86 842 192 HOH HOH . J 4 HOH B 87 843 194 HOH HOH . J 4 HOH B 88 844 196 HOH HOH . J 4 HOH B 89 845 197 HOH HOH . J 4 HOH B 90 846 198 HOH HOH . J 4 HOH B 91 847 199 HOH HOH . J 4 HOH B 92 848 200 HOH HOH . J 4 HOH B 93 849 203 HOH HOH . J 4 HOH B 94 850 205 HOH HOH . J 4 HOH B 95 851 207 HOH HOH . J 4 HOH B 96 852 208 HOH HOH . J 4 HOH B 97 853 211 HOH HOH . J 4 HOH B 98 854 213 HOH HOH . J 4 HOH B 99 855 214 HOH HOH . J 4 HOH B 100 856 216 HOH HOH . J 4 HOH B 101 857 226 HOH HOH . J 4 HOH B 102 858 227 HOH HOH . J 4 HOH B 103 859 228 HOH HOH . J 4 HOH B 104 860 229 HOH HOH . J 4 HOH B 105 861 230 HOH HOH . J 4 HOH B 106 862 231 HOH HOH . J 4 HOH B 107 863 232 HOH HOH . J 4 HOH B 108 864 233 HOH HOH . J 4 HOH B 109 865 234 HOH HOH . J 4 HOH B 110 866 235 HOH HOH . J 4 HOH B 111 867 236 HOH HOH . J 4 HOH B 112 868 238 HOH HOH . J 4 HOH B 113 869 239 HOH HOH . J 4 HOH B 114 870 241 HOH HOH . J 4 HOH B 115 871 242 HOH HOH . J 4 HOH B 116 872 243 HOH HOH . J 4 HOH B 117 873 244 HOH HOH . J 4 HOH B 118 874 245 HOH HOH . J 4 HOH B 119 875 247 HOH HOH . J 4 HOH B 120 876 248 HOH HOH . J 4 HOH B 121 877 249 HOH HOH . J 4 HOH B 122 878 250 HOH HOH . J 4 HOH B 123 879 251 HOH HOH . J 4 HOH B 124 880 256 HOH HOH . J 4 HOH B 125 881 257 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -8.792 _atom_site.Cartn_y 19.111 _atom_site.Cartn_z -13.321 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 756 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #