data_2O1X
#
_model_server_result.job_id            n2hK0OkHG7bgNmqEERyYqA 
_model_server_result.datetime_utc      '2024-11-05 01:18:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o1x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1002}' 
#
_entry.id    2O1X 
#
_exptl.entry_id    2O1X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.314 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'THIAMINE DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.91 
_cell.angle_gamma         90 
_cell.entry_id            2O1X 
_cell.length_a            78.261 
_cell.length_b            154.062 
_cell.length_c            124.881 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O1X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 154 A ASP 154 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc2 A ND2 ASN 183 A ASN 183 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc3 A O MET 185 A MET 185 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc4 F O2B TPP . A TPP 1001 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc5 F O1A TPP . A TPP 1001 1_555 E MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc6 B OD2 ASP 154 B ASP 154 1_555 G MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc7 B ND2 ASN 183 B ASN 183 1_555 G MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc8 B O MET 185 B MET 185 1_555 G MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc9 H O3B TPP . B TPP 1002 1_555 G MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
metalc ? metalc10 H O2A TPP . B TPP 1002 1_555 G MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc11 C OD2 ASP 154 C ASP 154 1_555 I MG MG . C MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc12 C OD1 ASN 183 C ASN 183 1_555 I MG MG . C MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc13 J O1B TPP . C TPP 1003 1_555 I MG MG . C MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc14 J O1A TPP . C TPP 1003 1_555 I MG MG . C MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc15 D OD2 ASP 154 D ASP 154 1_555 K MG MG . D MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? 
metalc ? metalc16 D OD1 ASN 183 D ASN 183 1_555 K MG MG . D MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
metalc ? metalc17 D O MET 185 D MET 185 1_555 K MG MG . D MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc18 L O2A TPP . D TPP 1004 1_555 K MG MG . D MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc19 L O1B TPP . D TPP 1004 1_555 K MG MG . D MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
#
_chem_comp.formula           'C12 H19 N4 O7 P2 S 1' 
_chem_comp.formula_weight    425.314 
_chem_comp.id                TPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'THIAMINE DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1' C2' TPP doub 304 n y 
N1' C6' TPP sing 305 n y 
C2' CM2 TPP sing 306 n n 
C2' N3' TPP sing 307 n y 
CM2 HM21 TPP sing 308 n n 
CM2 HM22 TPP sing 309 n n 
CM2 HM23 TPP sing 310 n n 
N3' C4' TPP doub 311 n y 
C4' N4' TPP sing 312 n n 
C4' C5' TPP sing 313 n y 
N4' HN41 TPP sing 314 n n 
N4' HN42 TPP sing 315 n n 
C5' C6' TPP doub 316 n y 
C5' C7' TPP sing 317 n n 
C6' H6' TPP sing 318 n n 
C7' N3 TPP sing 319 n n 
C7' "H7'1" TPP sing 320 n n 
C7' "H7'2" TPP sing 321 n n 
N3 C2 TPP doub 322 n y 
N3 C4 TPP sing 323 n y 
C2 S1 TPP sing 324 n y 
C2 H2 TPP sing 325 n n 
S1 C5 TPP sing 326 n y 
C5 C4 TPP doub 327 n y 
C5 C6 TPP sing 328 n n 
C4 CM4 TPP sing 329 n n 
CM4 HM41 TPP sing 330 n n 
CM4 HM42 TPP sing 331 n n 
CM4 HM43 TPP sing 332 n n 
C6 C7 TPP sing 333 n n 
C6 H61 TPP sing 334 n n 
C6 H62 TPP sing 335 n n 
C7 O7 TPP sing 336 n n 
C7 H71 TPP sing 337 n n 
C7 H72 TPP sing 338 n n 
O7 PA TPP sing 339 n n 
PA O1A TPP doub 340 n n 
PA O2A TPP sing 341 n n 
PA O3A TPP sing 342 n n 
O2A HOA2 TPP sing 343 n n 
O3A PB TPP sing 344 n n 
PB O1B TPP doub 345 n n 
PB O2B TPP sing 346 n n 
PB O3B TPP sing 347 n n 
O2B HOB2 TPP sing 348 n n 
O3B HOB3 TPP sing 349 n n 
#
_atom_sites.entry_id                     2O1X 
_atom_sites.fract_transf_matrix[1][1]    0.012778 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002003 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008105 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 2001 2001 MG MG . 
F 3 TPP A 1 1001 1001 TPP TDP . 
G 2 MG B 1 2002 2002 MG MG . 
H 3 TPP B 1 1002 1002 TPP TDP . 
I 2 MG C 1 2003 2003 MG MG . 
J 3 TPP C 1 1003 1003 TPP TDP . 
K 2 MG D 1 2004 2004 MG MG . 
L 3 TPP D 1 1004 1004 TPP TDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1' TPP . . . H 3 41.69 -7.978 22.343 1 2.41 ? N1' TPP 1002 B 1 
HETATM 2 C C2' TPP . . . H 3 41.616 -7.775 21.014 1 3.04 ? C2' TPP 1002 B 1 
HETATM 3 C CM2 TPP . . . H 3 40.407 -7.07 20.378 1 2.19 ? CM2 TPP 1002 B 1 
HETATM 4 N N3' TPP . . . H 3 42.614 -8.184 20.22 1 3.05 ? N3' TPP 1002 B 1 
HETATM 5 C C4' TPP . . . H 3 43.691 -8.792 20.725 1 2.45 ? C4' TPP 1002 B 1 
HETATM 6 N N4' TPP . . . H 3 44.655 -9.157 19.892 1 2.25 ? N4' TPP 1002 B 1 
HETATM 7 C C5' TPP . . . H 3 43.777 -9.021 22.093 1 2.47 ? C5' TPP 1002 B 1 
HETATM 8 C C6' TPP . . . H 3 42.728 -8.579 22.884 1 2.36 ? C6' TPP 1002 B 1 
HETATM 9 C C7' TPP . . . H 3 44.948 -9.687 22.813 1 3.59 ? C7' TPP 1002 B 1 
HETATM 10 N N3 TPP . . . H 3 45.405 -10.935 22.166 1 4.92 ? N3 TPP 1002 B 1 
HETATM 11 C C2 TPP . . . H 3 46.395 -10.938 21.235 1 4.66 ? C2 TPP 1002 B 1 
HETATM 12 S S1 TPP . . . H 3 46.607 -12.608 20.752 1 6 ? S1 TPP 1002 B 1 
HETATM 13 C C5 TPP . . . H 3 45.415 -13.222 21.825 1 4.43 ? C5 TPP 1002 B 1 
HETATM 14 C C4 TPP . . . H 3 44.873 -12.137 22.5 1 4.22 ? C4 TPP 1002 B 1 
HETATM 15 C CM4 TPP . . . H 3 43.769 -12.305 23.54 1 4.7 ? CM4 TPP 1002 B 1 
HETATM 16 C C6 TPP . . . H 3 45.072 -14.691 21.934 1 4.4 ? C6 TPP 1002 B 1 
HETATM 17 C C7 TPP . . . H 3 44.243 -15.152 20.738 1 4.7 ? C7 TPP 1002 B 1 
HETATM 18 O O7 TPP . . . H 3 43.719 -16.452 21.04 1 3.71 ? O7 TPP 1002 B 1 
HETATM 19 P PA TPP . . . H 3 43.699 -17.524 19.888 1 2.52 ? PA TPP 1002 B 1 
HETATM 20 O O1A TPP . . . H 3 42.781 -17.156 18.793 1 2.14 ? O1A TPP 1002 B 1 
HETATM 21 O O2A TPP . . . H 3 43.398 -18.968 20.552 1 2.22 ? O2A TPP 1002 B 1 
HETATM 22 O O3A TPP . . . H 3 45.232 -17.52 19.381 1 3.4 ? O3A TPP 1002 B 1 
HETATM 23 P PB TPP . . . H 3 46.246 -18.778 19.516 1 3.72 ? PB TPP 1002 B 1 
HETATM 24 O O1B TPP . . . H 3 47.25 -18.755 18.431 1 2.95 ? O1B TPP 1002 B 1 
HETATM 25 O O2B TPP . . . H 3 46.944 -18.767 20.952 1 3.01 ? O2B TPP 1002 B 1 
HETATM 26 O O3B TPP . . . H 3 45.311 -20.14 19.502 1 4.84 ? O3B TPP 1002 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#