data_2O2S
#
_model_server_result.job_id            d2Hha0o6WjzTiSYJvple1A 
_model_server_result.datetime_utc      '2024-12-27 04:27:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    2O2S 
#
_exptl.entry_id    2O2S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2O2S 
_cell.length_a            78.075 
_cell.length_b            78.075 
_cell.length_c            187.955 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O2S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 135.229867 62.651667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 224 n n 
PA O2A NAD sing 225 n n 
PA O5B NAD sing 226 n n 
PA O3 NAD sing 227 n n 
O2A HOA2 NAD sing 228 n n 
O5B C5B NAD sing 229 n n 
C5B C4B NAD sing 230 n n 
C5B H51A NAD sing 231 n n 
C5B H52A NAD sing 232 n n 
C4B O4B NAD sing 233 n n 
C4B C3B NAD sing 234 n n 
C4B H4B NAD sing 235 n n 
O4B C1B NAD sing 236 n n 
C3B O3B NAD sing 237 n n 
C3B C2B NAD sing 238 n n 
C3B H3B NAD sing 239 n n 
O3B HO3A NAD sing 240 n n 
C2B O2B NAD sing 241 n n 
C2B C1B NAD sing 242 n n 
C2B H2B NAD sing 243 n n 
O2B HO2A NAD sing 244 n n 
C1B N9A NAD sing 245 n n 
C1B H1B NAD sing 246 n n 
N9A C8A NAD sing 247 n y 
N9A C4A NAD sing 248 n y 
C8A N7A NAD doub 249 n y 
C8A H8A NAD sing 250 n n 
N7A C5A NAD sing 251 n y 
C5A C6A NAD sing 252 n y 
C5A C4A NAD doub 253 n y 
C6A N6A NAD sing 254 n n 
C6A N1A NAD doub 255 n y 
N6A H61A NAD sing 256 n n 
N6A H62A NAD sing 257 n n 
N1A C2A NAD sing 258 n y 
C2A N3A NAD doub 259 n y 
C2A H2A NAD sing 260 n n 
N3A C4A NAD sing 261 n y 
O3 PN NAD sing 262 n n 
PN O1N NAD doub 263 n n 
PN O2N NAD sing 264 n n 
PN O5D NAD sing 265 n n 
O5D C5D NAD sing 266 n n 
C5D C4D NAD sing 267 n n 
C5D H51N NAD sing 268 n n 
C5D H52N NAD sing 269 n n 
C4D O4D NAD sing 270 n n 
C4D C3D NAD sing 271 n n 
C4D H4D NAD sing 272 n n 
O4D C1D NAD sing 273 n n 
C3D O3D NAD sing 274 n n 
C3D C2D NAD sing 275 n n 
C3D H3D NAD sing 276 n n 
O3D HO3N NAD sing 277 n n 
C2D O2D NAD sing 278 n n 
C2D C1D NAD sing 279 n n 
C2D H2D NAD sing 280 n n 
O2D HO2N NAD sing 281 n n 
C1D N1N NAD sing 282 n n 
C1D H1D NAD sing 283 n n 
N1N C2N NAD sing 284 n y 
N1N C6N NAD doub 285 n y 
C2N C3N NAD doub 286 n y 
C2N H2N NAD sing 287 n n 
C3N C7N NAD sing 288 n n 
C3N C4N NAD sing 289 n y 
C7N O7N NAD doub 290 n n 
C7N N7N NAD sing 291 n n 
N7N H71N NAD sing 292 n n 
N7N H72N NAD sing 293 n n 
C4N C5N NAD doub 294 n y 
C4N H4N NAD sing 295 n n 
C5N C6N NAD sing 296 n y 
C5N H5N NAD sing 297 n n 
C6N H6N NAD sing 298 n n 
#
_atom_sites.entry_id                     2O2S 
_atom_sites.fract_transf_matrix[1][1]    0.012808 
_atom_sites.fract_transf_matrix[1][2]    0.007395 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 500 500 NAD NAD . 
D 3 TCL A 1 705 705 TCL TCL . 
E 2 NAD B 1 501 501 NAD NAD . 
F 3 TCL B 1 706 706 TCL TCL . 
G 4 HOH A 1 706 3 HOH HOH . 
G 4 HOH A 2 707 6 HOH HOH . 
G 4 HOH A 3 708 7 HOH HOH . 
G 4 HOH A 4 709 8 HOH HOH . 
G 4 HOH A 5 710 9 HOH HOH . 
G 4 HOH A 6 711 10 HOH HOH . 
G 4 HOH A 7 712 15 HOH HOH . 
G 4 HOH A 8 713 16 HOH HOH . 
G 4 HOH A 9 714 19 HOH HOH . 
G 4 HOH A 10 715 21 HOH HOH . 
G 4 HOH A 11 716 25 HOH HOH . 
G 4 HOH A 12 717 27 HOH HOH . 
G 4 HOH A 13 718 30 HOH HOH . 
G 4 HOH A 14 719 32 HOH HOH . 
G 4 HOH A 15 720 34 HOH HOH . 
G 4 HOH A 16 721 35 HOH HOH . 
H 4 HOH B 1 707 1 HOH HOH . 
H 4 HOH B 2 708 2 HOH HOH . 
H 4 HOH B 3 709 4 HOH HOH . 
H 4 HOH B 4 710 5 HOH HOH . 
H 4 HOH B 5 711 11 HOH HOH . 
H 4 HOH B 6 712 12 HOH HOH . 
H 4 HOH B 7 713 13 HOH HOH . 
H 4 HOH B 8 714 14 HOH HOH . 
H 4 HOH B 9 715 17 HOH HOH . 
H 4 HOH B 10 716 18 HOH HOH . 
H 4 HOH B 11 717 20 HOH HOH . 
H 4 HOH B 12 718 23 HOH HOH . 
H 4 HOH B 13 719 24 HOH HOH . 
H 4 HOH B 14 720 26 HOH HOH . 
H 4 HOH B 15 721 28 HOH HOH . 
H 4 HOH B 16 722 29 HOH HOH . 
H 4 HOH B 17 723 31 HOH HOH . 
H 4 HOH B 18 724 33 HOH HOH . 
H 4 HOH B 19 725 36 HOH HOH . 
H 4 HOH B 20 726 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . C 2 -30.727 42.371 35.242 1 61.18 ? PA NAD 500 A 1 
HETATM 2 O O1A NAD . . . C 2 -30.046 41.639 34.101 1 61.54 ? O1A NAD 500 A 1 
HETATM 3 O O2A NAD . . . C 2 -31.964 41.822 35.921 1 62.96 ? O2A NAD 500 A 1 
HETATM 4 O O5B NAD . . . C 2 -29.587 42.835 36.271 1 65.12 ? O5B NAD 500 A 1 
HETATM 5 C C5B NAD . . . C 2 -29.414 42.322 37.578 1 67.12 ? C5B NAD 500 A 1 
HETATM 6 C C4B NAD . . . C 2 -28.448 41.168 37.451 1 67.42 ? C4B NAD 500 A 1 
HETATM 7 O O4B NAD . . . C 2 -27.294 41.412 38.237 1 68.16 ? O4B NAD 500 A 1 
HETATM 8 C C3B NAD . . . C 2 -29.084 39.905 37.967 1 69.1 ? C3B NAD 500 A 1 
HETATM 9 O O3B NAD . . . C 2 -28.864 38.935 36.971 1 71.66 ? O3B NAD 500 A 1 
HETATM 10 C C2B NAD . . . C 2 -28.312 39.433 39.156 1 69.42 ? C2B NAD 500 A 1 
HETATM 11 O O2B NAD . . . C 2 -27.994 38.056 39.082 1 71.21 ? O2B NAD 500 A 1 
HETATM 12 C C1B NAD . . . C 2 -27.106 40.354 39.192 1 69.81 ? C1B NAD 500 A 1 
HETATM 13 N N9A NAD . . . C 2 -26.785 40.776 40.565 1 70.27 ? N9A NAD 500 A 1 
HETATM 14 C C8A NAD . . . C 2 -27.508 41.605 41.343 1 70.45 ? C8A NAD 500 A 1 
HETATM 15 N N7A NAD . . . C 2 -26.879 41.747 42.556 1 70.95 ? N7A NAD 500 A 1 
HETATM 16 C C5A NAD . . . C 2 -25.747 40.998 42.532 1 70.45 ? C5A NAD 500 A 1 
HETATM 17 C C6A NAD . . . C 2 -24.688 40.697 43.408 1 70.65 ? C6A NAD 500 A 1 
HETATM 18 N N6A NAD . . . C 2 -24.687 41.276 44.647 1 70.5 ? N6A NAD 500 A 1 
HETATM 19 N N1A NAD . . . C 2 -23.677 39.844 43.034 1 70.22 ? N1A NAD 500 A 1 
HETATM 20 C C2A NAD . . . C 2 -23.661 39.272 41.815 1 69.94 ? C2A NAD 500 A 1 
HETATM 21 N N3A NAD . . . C 2 -24.637 39.528 40.933 1 70.37 ? N3A NAD 500 A 1 
HETATM 22 C C4A NAD . . . C 2 -25.72 40.418 41.297 1 70.1 ? C4A NAD 500 A 1 
HETATM 23 O O3 NAD . . . C 2 -31.242 43.812 34.782 1 55.96 ? O3 NAD 500 A 1 
HETATM 24 P PN NAD . . . C 2 -30.351 44.914 34.019 1 50.94 ? PN NAD 500 A 1 
HETATM 25 O O1N NAD . . . C 2 -31.159 46.177 34.024 1 50.11 ? O1N NAD 500 A 1 
HETATM 26 O O2N NAD . . . C 2 -29.999 44.299 32.703 1 53.41 ? O2N NAD 500 A 1 
HETATM 27 O O5D NAD . . . C 2 -28.993 45.126 34.875 1 49.76 ? O5D NAD 500 A 1 
HETATM 28 C C5D NAD . . . C 2 -27.729 45.154 34.212 1 45.53 ? C5D NAD 500 A 1 
HETATM 29 C C4D NAD . . . C 2 -26.957 46.422 34.504 1 44.45 ? C4D NAD 500 A 1 
HETATM 30 O O4D NAD . . . C 2 -27.37 47.499 33.683 1 41.61 ? O4D NAD 500 A 1 
HETATM 31 C C3D NAD . . . C 2 -27.114 46.917 35.922 1 45.62 ? C3D NAD 500 A 1 
HETATM 32 O O3D NAD . . . C 2 -25.774 47.1 36.404 1 46.56 ? O3D NAD 500 A 1 
HETATM 33 C C2D NAD . . . C 2 -27.756 48.282 35.879 1 44.81 ? C2D NAD 500 A 1 
HETATM 34 O O2D NAD . . . C 2 -27.218 49.238 36.76 1 46.78 ? O2D NAD 500 A 1 
HETATM 35 C C1D NAD . . . C 2 -27.673 48.657 34.43 1 43.75 ? C1D NAD 500 A 1 
HETATM 36 N N1N NAD . . . C 2 -28.748 49.472 33.882 1 47.08 ? N1N NAD 500 A 1 
HETATM 37 C C2N NAD . . . C 2 -29.99 48.98 33.648 1 44.19 ? C2N NAD 500 A 1 
HETATM 38 C C3N NAD . . . C 2 -30.984 49.776 33.104 1 43.64 ? C3N NAD 500 A 1 
HETATM 39 C C7N NAD . . . C 2 -32.4 49.28 32.803 1 44.64 ? C7N NAD 500 A 1 
HETATM 40 O O7N NAD . . . C 2 -33.262 50.125 32.518 1 43.3 ? O7N NAD 500 A 1 
HETATM 41 N N7N NAD . . . C 2 -32.718 47.969 32.928 1 42.1 ? N7N NAD 500 A 1 
HETATM 42 C C4N NAD . . . C 2 -30.647 51.096 32.825 1 44.7 ? C4N NAD 500 A 1 
HETATM 43 C C5N NAD . . . C 2 -29.373 51.583 33.071 1 44.7 ? C5N NAD 500 A 1 
HETATM 44 C C6N NAD . . . C 2 -28.412 50.752 33.607 1 45.01 ? C6N NAD 500 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           44 
#