data_2O2S
#
_model_server_result.job_id            5LV3dntyk44zf12F7pNdJA 
_model_server_result.datetime_utc      '2024-11-01 12:19:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    2O2S 
#
_exptl.entry_id    2O2S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2O2S 
_cell.length_a            78.075 
_cell.length_b            78.075 
_cell.length_c            187.955 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O2S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 135.229867 62.651667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 224 n n 
PA O2A NAD sing 225 n n 
PA O5B NAD sing 226 n n 
PA O3 NAD sing 227 n n 
O2A HOA2 NAD sing 228 n n 
O5B C5B NAD sing 229 n n 
C5B C4B NAD sing 230 n n 
C5B H51A NAD sing 231 n n 
C5B H52A NAD sing 232 n n 
C4B O4B NAD sing 233 n n 
C4B C3B NAD sing 234 n n 
C4B H4B NAD sing 235 n n 
O4B C1B NAD sing 236 n n 
C3B O3B NAD sing 237 n n 
C3B C2B NAD sing 238 n n 
C3B H3B NAD sing 239 n n 
O3B HO3A NAD sing 240 n n 
C2B O2B NAD sing 241 n n 
C2B C1B NAD sing 242 n n 
C2B H2B NAD sing 243 n n 
O2B HO2A NAD sing 244 n n 
C1B N9A NAD sing 245 n n 
C1B H1B NAD sing 246 n n 
N9A C8A NAD sing 247 n y 
N9A C4A NAD sing 248 n y 
C8A N7A NAD doub 249 n y 
C8A H8A NAD sing 250 n n 
N7A C5A NAD sing 251 n y 
C5A C6A NAD sing 252 n y 
C5A C4A NAD doub 253 n y 
C6A N6A NAD sing 254 n n 
C6A N1A NAD doub 255 n y 
N6A H61A NAD sing 256 n n 
N6A H62A NAD sing 257 n n 
N1A C2A NAD sing 258 n y 
C2A N3A NAD doub 259 n y 
C2A H2A NAD sing 260 n n 
N3A C4A NAD sing 261 n y 
O3 PN NAD sing 262 n n 
PN O1N NAD doub 263 n n 
PN O2N NAD sing 264 n n 
PN O5D NAD sing 265 n n 
O5D C5D NAD sing 266 n n 
C5D C4D NAD sing 267 n n 
C5D H51N NAD sing 268 n n 
C5D H52N NAD sing 269 n n 
C4D O4D NAD sing 270 n n 
C4D C3D NAD sing 271 n n 
C4D H4D NAD sing 272 n n 
O4D C1D NAD sing 273 n n 
C3D O3D NAD sing 274 n n 
C3D C2D NAD sing 275 n n 
C3D H3D NAD sing 276 n n 
O3D HO3N NAD sing 277 n n 
C2D O2D NAD sing 278 n n 
C2D C1D NAD sing 279 n n 
C2D H2D NAD sing 280 n n 
O2D HO2N NAD sing 281 n n 
C1D N1N NAD sing 282 n n 
C1D H1D NAD sing 283 n n 
N1N C2N NAD sing 284 n y 
N1N C6N NAD doub 285 n y 
C2N C3N NAD doub 286 n y 
C2N H2N NAD sing 287 n n 
C3N C7N NAD sing 288 n n 
C3N C4N NAD sing 289 n y 
C7N O7N NAD doub 290 n n 
C7N N7N NAD sing 291 n n 
N7N H71N NAD sing 292 n n 
N7N H72N NAD sing 293 n n 
C4N C5N NAD doub 294 n y 
C4N H4N NAD sing 295 n n 
C5N C6N NAD sing 296 n y 
C5N H5N NAD sing 297 n n 
C6N H6N NAD sing 298 n n 
#
_atom_sites.entry_id                     2O2S 
_atom_sites.fract_transf_matrix[1][1]    0.012808 
_atom_sites.fract_transf_matrix[1][2]    0.007395 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 500 500 NAD NAD . 
D 3 TCL A 1 705 705 TCL TCL . 
E 2 NAD B 1 501 501 NAD NAD . 
F 3 TCL B 1 706 706 TCL TCL . 
G 4 HOH A 1 706 3 HOH HOH . 
G 4 HOH A 2 707 6 HOH HOH . 
G 4 HOH A 3 708 7 HOH HOH . 
G 4 HOH A 4 709 8 HOH HOH . 
G 4 HOH A 5 710 9 HOH HOH . 
G 4 HOH A 6 711 10 HOH HOH . 
G 4 HOH A 7 712 15 HOH HOH . 
G 4 HOH A 8 713 16 HOH HOH . 
G 4 HOH A 9 714 19 HOH HOH . 
G 4 HOH A 10 715 21 HOH HOH . 
G 4 HOH A 11 716 25 HOH HOH . 
G 4 HOH A 12 717 27 HOH HOH . 
G 4 HOH A 13 718 30 HOH HOH . 
G 4 HOH A 14 719 32 HOH HOH . 
G 4 HOH A 15 720 34 HOH HOH . 
G 4 HOH A 16 721 35 HOH HOH . 
H 4 HOH B 1 707 1 HOH HOH . 
H 4 HOH B 2 708 2 HOH HOH . 
H 4 HOH B 3 709 4 HOH HOH . 
H 4 HOH B 4 710 5 HOH HOH . 
H 4 HOH B 5 711 11 HOH HOH . 
H 4 HOH B 6 712 12 HOH HOH . 
H 4 HOH B 7 713 13 HOH HOH . 
H 4 HOH B 8 714 14 HOH HOH . 
H 4 HOH B 9 715 17 HOH HOH . 
H 4 HOH B 10 716 18 HOH HOH . 
H 4 HOH B 11 717 20 HOH HOH . 
H 4 HOH B 12 718 23 HOH HOH . 
H 4 HOH B 13 719 24 HOH HOH . 
H 4 HOH B 14 720 26 HOH HOH . 
H 4 HOH B 15 721 28 HOH HOH . 
H 4 HOH B 16 722 29 HOH HOH . 
H 4 HOH B 17 723 31 HOH HOH . 
H 4 HOH B 18 724 33 HOH HOH . 
H 4 HOH B 19 725 36 HOH HOH . 
H 4 HOH B 20 726 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . E 2 -7.869 66.368 5.929 1 51.05 ? PA NAD 501 B 1 
HETATM 2 O O1A NAD . . . E 2 -8.674 65.168 5.557 1 52.31 ? O1A NAD 501 B 1 
HETATM 3 O O2A NAD . . . E 2 -6.404 66.489 5.578 1 53.43 ? O2A NAD 501 B 1 
HETATM 4 O O5B NAD . . . E 2 -8.603 67.59 5.215 1 54.13 ? O5B NAD 501 B 1 
HETATM 5 C C5B NAD . . . E 2 -9.597 68.469 5.737 1 55.79 ? C5B NAD 501 B 1 
HETATM 6 C C4B NAD . . . E 2 -10.559 68.396 4.58 1 57.04 ? C4B NAD 501 B 1 
HETATM 7 O O4B NAD . . . E 2 -11.5 69.443 4.548 1 58.12 ? O4B NAD 501 B 1 
HETATM 8 C C3B NAD . . . E 2 -9.84 68.385 3.237 1 58.06 ? C3B NAD 501 B 1 
HETATM 9 O O3B NAD . . . E 2 -10.228 67.166 2.605 1 57.72 ? O3B NAD 501 B 1 
HETATM 10 C C2B NAD . . . E 2 -10.387 69.501 2.409 1 59.5 ? C2B NAD 501 B 1 
HETATM 11 O O2B NAD . . . E 2 -10.745 69.071 1.101 1 63.35 ? O2B NAD 501 B 1 
HETATM 12 C C1B NAD . . . E 2 -11.557 70.011 3.238 1 58.88 ? C1B NAD 501 B 1 
HETATM 13 N N9A NAD . . . E 2 -11.981 71.427 3.194 1 58.98 ? N9A NAD 501 B 1 
HETATM 14 C C8A NAD . . . E 2 -11.422 72.536 3.726 1 58.84 ? C8A NAD 501 B 1 
HETATM 15 N N7A NAD . . . E 2 -12.227 73.61 3.446 1 59.09 ? N7A NAD 501 B 1 
HETATM 16 C C5A NAD . . . E 2 -13.301 73.148 2.761 1 59 ? C5A NAD 501 B 1 
HETATM 17 C C6A NAD . . . E 2 -14.454 73.672 2.175 1 58.8 ? C6A NAD 501 B 1 
HETATM 18 N N6A NAD . . . E 2 -14.658 74.999 2.275 1 59.15 ? N6A NAD 501 B 1 
HETATM 19 N N1A NAD . . . E 2 -15.361 72.878 1.534 1 58.6 ? N1A NAD 501 B 1 
HETATM 20 C C2A NAD . . . E 2 -15.192 71.551 1.408 1 58.35 ? C2A NAD 501 B 1 
HETATM 21 N N3A NAD . . . E 2 -14.107 70.97 1.94 1 58.6 ? N3A NAD 501 B 1 
HETATM 22 C C4A NAD . . . E 2 -13.131 71.804 2.636 1 58.51 ? C4A NAD 501 B 1 
HETATM 23 O O3 NAD . . . E 2 -7.966 66.67 7.5 1 51.06 ? O3 NAD 501 B 1 
HETATM 24 P PN NAD . . . E 2 -8.238 65.587 8.654 1 48.87 ? PN NAD 501 B 1 
HETATM 25 O O1N NAD . . . E 2 -7.101 65.606 9.661 1 51.34 ? O1N NAD 501 B 1 
HETATM 26 O O2N NAD . . . E 2 -8.683 64.264 8.143 1 50.63 ? O2N NAD 501 B 1 
HETATM 27 O O5D NAD . . . E 2 -9.498 66.375 9.19 1 49.73 ? O5D NAD 501 B 1 
HETATM 28 C C5D NAD . . . E 2 -10.821 65.996 8.821 1 49.24 ? C5D NAD 501 B 1 
HETATM 29 C C4D NAD . . . E 2 -11.669 66.392 10.017 1 47.65 ? C4D NAD 501 B 1 
HETATM 30 O O4D NAD . . . E 2 -11.236 65.724 11.188 1 46.07 ? O4D NAD 501 B 1 
HETATM 31 C C3D NAD . . . E 2 -11.53 67.87 10.294 1 46.59 ? C3D NAD 501 B 1 
HETATM 32 O O3D NAD . . . E 2 -12.831 68.358 10.51 1 47.65 ? O3D NAD 501 B 1 
HETATM 33 C C2D NAD . . . E 2 -10.875 68.055 11.616 1 46.06 ? C2D NAD 501 B 1 
HETATM 34 O O2D NAD . . . E 2 -11.485 69.046 12.374 1 44.56 ? O2D NAD 501 B 1 
HETATM 35 C C1D NAD . . . E 2 -10.918 66.679 12.203 1 47.52 ? C1D NAD 501 B 1 
HETATM 36 N N1N NAD . . . E 2 -9.854 66.3 13.116 1 48.04 ? N1N NAD 501 B 1 
HETATM 37 C C2N NAD . . . E 2 -8.661 65.959 12.678 1 49.48 ? C2N NAD 501 B 1 
HETATM 38 C C3N NAD . . . E 2 -7.693 65.582 13.603 1 49.66 ? C3N NAD 501 B 1 
HETATM 39 C C7N NAD . . . E 2 -6.333 65.198 13.154 1 48.1 ? C7N NAD 501 B 1 
HETATM 40 O O7N NAD . . . E 2 -5.499 65.097 14.02 1 51.06 ? O7N NAD 501 B 1 
HETATM 41 N N7N NAD . . . E 2 -6.076 65.004 11.862 1 46.06 ? N7N NAD 501 B 1 
HETATM 42 C C4N NAD . . . E 2 -7.988 65.579 14.965 1 49.9 ? C4N NAD 501 B 1 
HETATM 43 C C5N NAD . . . E 2 -9.263 65.935 15.381 1 48.65 ? C5N NAD 501 B 1 
HETATM 44 C C6N NAD . . . E 2 -10.177 66.292 14.421 1 47.84 ? C6N NAD 501 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           452 
_model_server_stats.encode_time_ms          41 
_model_server_stats.element_count           44 
#