data_2O3K # _model_server_result.job_id HkZP7n7sTFQpv2sNwlapGw _model_server_result.datetime_utc '2024-10-13 21:13:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":410}' # _entry.id 2O3K # _exptl.entry_id 2O3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.103 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-HYDROXY-3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O3K _cell.length_a 55.916 _cell.length_b 69.09 _cell.length_c 74.174 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 65 A HIS 62 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 A SG CYS 94 A CYS 91 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A SG CYS 97 A CYS 94 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 A OE1 GLN 153 A GLN 150 1_555 F CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc5 C ZN ZN . A ZN 401 1_555 D O4 HPY . A HPY 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 H O HOH . A HOH 423 1_555 F CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc7 H O HOH . A HOH 435 1_555 F CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc8 B ND1 HIS 65 B HIS 262 1_555 E ZN ZN . B ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc9 B OE1 GLU 78 B GLU 275 1_555 F CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc10 B OE2 GLU 78 B GLU 275 1_555 F CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc11 B SG CYS 94 B CYS 291 1_555 E ZN ZN . B ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc12 B SG CYS 97 B CYS 294 1_555 E ZN ZN . B ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc13 E ZN ZN . B ZN 400 1_555 G O4 HPY . B HPY 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'C4 H6 N2 O2' _chem_comp.formula_weight 114.103 _chem_comp.id HPY _chem_comp.mon_nstd_flag . _chem_comp.name 4-HYDROXY-3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPY sing 152 n n N1 C6 HPY sing 153 n n N1 H1 HPY sing 154 n n C2 O2 HPY doub 155 n n C2 N3 HPY sing 156 n n N3 C4 HPY sing 157 n n N3 H3 HPY sing 158 n n C4 O4 HPY sing 159 n n C4 C5 HPY sing 160 n n C4 H4 HPY sing 161 n n O4 HO4 HPY sing 162 n n C5 C6 HPY doub 163 n n C5 H5 HPY sing 164 n n C6 H6 HPY sing 165 n n # _atom_sites.entry_id 2O3K _atom_sites.fract_transf_matrix[1][1] 0.017884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 3 HPY A 1 411 411 HPY HPY . E 2 ZN B 1 400 400 ZN ZN . F 4 CA B 1 403 403 CA CA . G 3 HPY B 1 410 410 HPY HPY . H 5 HOH A 1 412 502 HOH HOH . H 5 HOH A 2 413 504 HOH HOH . H 5 HOH A 3 414 505 HOH HOH . H 5 HOH A 4 415 507 HOH HOH . H 5 HOH A 5 416 509 HOH HOH . H 5 HOH A 6 417 513 HOH HOH . H 5 HOH A 7 418 514 HOH HOH . H 5 HOH A 8 419 515 HOH HOH . H 5 HOH A 9 420 516 HOH HOH . H 5 HOH A 10 421 517 HOH HOH . H 5 HOH A 11 422 518 HOH HOH . H 5 HOH A 12 423 519 HOH HOH . H 5 HOH A 13 424 523 HOH HOH . H 5 HOH A 14 425 525 HOH HOH . H 5 HOH A 15 426 526 HOH HOH . H 5 HOH A 16 427 531 HOH HOH . H 5 HOH A 17 428 532 HOH HOH . H 5 HOH A 18 429 534 HOH HOH . H 5 HOH A 19 430 535 HOH HOH . H 5 HOH A 20 431 537 HOH HOH . H 5 HOH A 21 432 538 HOH HOH . H 5 HOH A 22 433 539 HOH HOH . H 5 HOH A 23 434 541 HOH HOH . H 5 HOH A 24 435 542 HOH HOH . H 5 HOH A 25 436 546 HOH HOH . H 5 HOH A 26 437 548 HOH HOH . H 5 HOH A 27 438 549 HOH HOH . H 5 HOH A 28 439 553 HOH HOH . H 5 HOH A 29 440 554 HOH HOH . H 5 HOH A 30 441 555 HOH HOH . H 5 HOH A 31 442 556 HOH HOH . H 5 HOH A 32 443 557 HOH HOH . H 5 HOH A 33 444 558 HOH HOH . H 5 HOH A 34 445 560 HOH HOH . H 5 HOH A 35 446 561 HOH HOH . H 5 HOH A 36 447 564 HOH HOH . H 5 HOH A 37 448 566 HOH HOH . H 5 HOH A 38 449 567 HOH HOH . H 5 HOH A 39 450 568 HOH HOH . H 5 HOH A 40 451 569 HOH HOH . H 5 HOH A 41 452 571 HOH HOH . H 5 HOH A 42 453 573 HOH HOH . H 5 HOH A 43 454 575 HOH HOH . H 5 HOH A 44 455 578 HOH HOH . H 5 HOH A 45 456 579 HOH HOH . H 5 HOH A 46 457 585 HOH HOH . H 5 HOH A 47 458 589 HOH HOH . H 5 HOH A 48 459 592 HOH HOH . H 5 HOH A 49 460 595 HOH HOH . H 5 HOH A 50 461 601 HOH HOH . H 5 HOH A 51 462 602 HOH HOH . H 5 HOH A 52 463 607 HOH HOH . H 5 HOH A 53 464 609 HOH HOH . H 5 HOH A 54 465 610 HOH HOH . H 5 HOH A 55 466 613 HOH HOH . H 5 HOH A 56 467 617 HOH HOH . H 5 HOH A 57 468 619 HOH HOH . H 5 HOH A 58 469 621 HOH HOH . H 5 HOH A 59 470 622 HOH HOH . H 5 HOH A 60 471 623 HOH HOH . H 5 HOH A 61 472 624 HOH HOH . H 5 HOH A 62 473 626 HOH HOH . H 5 HOH A 63 474 627 HOH HOH . H 5 HOH A 64 475 628 HOH HOH . H 5 HOH A 65 476 631 HOH HOH . H 5 HOH A 66 477 632 HOH HOH . H 5 HOH A 67 478 633 HOH HOH . I 5 HOH B 1 411 501 HOH HOH . I 5 HOH B 2 412 503 HOH HOH . I 5 HOH B 3 413 506 HOH HOH . I 5 HOH B 4 414 508 HOH HOH . I 5 HOH B 5 415 510 HOH HOH . I 5 HOH B 6 416 511 HOH HOH . I 5 HOH B 7 417 512 HOH HOH . I 5 HOH B 8 418 520 HOH HOH . I 5 HOH B 9 419 521 HOH HOH . I 5 HOH B 10 420 522 HOH HOH . I 5 HOH B 11 421 524 HOH HOH . I 5 HOH B 12 422 527 HOH HOH . I 5 HOH B 13 423 528 HOH HOH . I 5 HOH B 14 424 529 HOH HOH . I 5 HOH B 15 425 530 HOH HOH . I 5 HOH B 16 426 533 HOH HOH . I 5 HOH B 17 427 536 HOH HOH . I 5 HOH B 18 428 540 HOH HOH . I 5 HOH B 19 429 543 HOH HOH . I 5 HOH B 20 430 544 HOH HOH . I 5 HOH B 21 431 545 HOH HOH . I 5 HOH B 22 432 547 HOH HOH . I 5 HOH B 23 433 550 HOH HOH . I 5 HOH B 24 434 551 HOH HOH . I 5 HOH B 25 435 552 HOH HOH . I 5 HOH B 26 436 559 HOH HOH . I 5 HOH B 27 437 562 HOH HOH . I 5 HOH B 28 438 563 HOH HOH . I 5 HOH B 29 439 565 HOH HOH . I 5 HOH B 30 440 570 HOH HOH . I 5 HOH B 31 441 572 HOH HOH . I 5 HOH B 32 442 574 HOH HOH . I 5 HOH B 33 443 576 HOH HOH . I 5 HOH B 34 444 577 HOH HOH . I 5 HOH B 35 445 580 HOH HOH . I 5 HOH B 36 446 581 HOH HOH . I 5 HOH B 37 447 582 HOH HOH . I 5 HOH B 38 448 583 HOH HOH . I 5 HOH B 39 449 584 HOH HOH . I 5 HOH B 40 450 586 HOH HOH . I 5 HOH B 41 451 587 HOH HOH . I 5 HOH B 42 452 588 HOH HOH . I 5 HOH B 43 453 590 HOH HOH . I 5 HOH B 44 454 591 HOH HOH . I 5 HOH B 45 455 593 HOH HOH . I 5 HOH B 46 456 594 HOH HOH . I 5 HOH B 47 457 596 HOH HOH . I 5 HOH B 48 458 597 HOH HOH . I 5 HOH B 49 459 598 HOH HOH . I 5 HOH B 50 460 599 HOH HOH . I 5 HOH B 51 461 600 HOH HOH . I 5 HOH B 52 462 603 HOH HOH . I 5 HOH B 53 463 604 HOH HOH . I 5 HOH B 54 464 605 HOH HOH . I 5 HOH B 55 465 606 HOH HOH . I 5 HOH B 56 466 608 HOH HOH . I 5 HOH B 57 467 611 HOH HOH . I 5 HOH B 58 468 612 HOH HOH . I 5 HOH B 59 469 614 HOH HOH . I 5 HOH B 60 470 615 HOH HOH . I 5 HOH B 61 471 616 HOH HOH . I 5 HOH B 62 472 618 HOH HOH . I 5 HOH B 63 473 620 HOH HOH . I 5 HOH B 64 474 625 HOH HOH . I 5 HOH B 65 475 629 HOH HOH . I 5 HOH B 66 476 630 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPY . . . G 3 33.117 36.874 -6.215 1 8.59 ? N1 HPY 410 B 1 HETATM 2 C C2 HPY . . . G 3 33.574 37.044 -4.971 1 8.15 ? C2 HPY 410 B 1 HETATM 3 O O2 HPY . . . G 3 34.337 36.221 -4.488 1 12.1 ? O2 HPY 410 B 1 HETATM 4 N N3 HPY . . . G 3 33.178 38.125 -4.274 1 7.62 ? N3 HPY 410 B 1 HETATM 5 C C4 HPY . . . G 3 32.269 39.105 -4.845 1 1.19 ? C4 HPY 410 B 1 HETATM 6 O O4 HPY . . . G 3 30.831 39.244 -4.039 1 2.32 ? O4 HPY 410 B 1 HETATM 7 C C5 HPY . . . G 3 31.819 38.821 -6.237 1 5.37 ? C5 HPY 410 B 1 HETATM 8 C C6 HPY . . . G 3 32.269 37.716 -6.854 1 7.74 ? C6 HPY 410 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #