data_2O3P # _model_server_result.job_id 6iJlpGMQMxcUTIRqF-YedA _model_server_result.datetime_utc '2025-03-05 21:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2O3P # _exptl.entry_id 2O3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2O3P _cell.length_a 97.761 _cell.length_b 97.761 _cell.length_c 81.185 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id QUE _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms QUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QUE doub 287 n y C1 C6 QUE sing 288 n y C1 H1 QUE sing 289 n n C2 C3 QUE sing 290 n y C2 O30 QUE sing 291 n n C3 C4 QUE doub 292 n y C3 C9 QUE sing 293 n y C4 C5 QUE sing 294 n y C4 O12 QUE sing 295 n y C5 C6 QUE doub 296 n y C5 H5 QUE sing 297 n n C6 O29 QUE sing 298 n n C9 C10 QUE sing 299 n y C9 O13 QUE doub 300 n n C10 C11 QUE doub 301 n y C10 O27 QUE sing 302 n n C11 C14 QUE sing 303 n y C11 O12 QUE sing 304 n y C14 C15 QUE doub 305 n y C14 C19 QUE sing 306 n y C15 C16 QUE sing 307 n y C15 H15 QUE sing 308 n n C16 C17 QUE doub 309 n y C16 H16 QUE sing 310 n n C17 C18 QUE sing 311 n y C17 O24 QUE sing 312 n n C18 C19 QUE doub 313 n y C18 O23 QUE sing 314 n n C19 H19 QUE sing 315 n n O23 HO3 QUE sing 316 n n O24 HO4 QUE sing 317 n n O27 HO7 QUE sing 318 n n O29 HO9 QUE sing 319 n n O30 HO0 QUE sing 320 n n # _atom_sites.entry_id 2O3P _atom_sites.fract_transf_matrix[1][1] 0.010229 _atom_sites.fract_transf_matrix[1][2] 0.005906 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 401 1 IMD IMD . C 2 IMD A 1 402 2 IMD IMD . D 3 QUE A 1 501 1 QUE QUE . E 4 HOH A 1 502 1 HOH HOH . E 4 HOH A 2 503 2 HOH HOH . E 4 HOH A 3 504 3 HOH HOH . E 4 HOH A 4 505 4 HOH HOH . E 4 HOH A 5 506 5 HOH HOH . E 4 HOH A 6 507 6 HOH HOH . E 4 HOH A 7 508 7 HOH HOH . E 4 HOH A 8 509 8 HOH HOH . E 4 HOH A 9 510 9 HOH HOH . E 4 HOH A 10 511 10 HOH HOH . E 4 HOH A 11 512 11 HOH HOH . E 4 HOH A 12 513 12 HOH HOH . E 4 HOH A 13 514 13 HOH HOH . E 4 HOH A 14 515 14 HOH HOH . E 4 HOH A 15 516 15 HOH HOH . E 4 HOH A 16 517 16 HOH HOH . E 4 HOH A 17 518 17 HOH HOH . E 4 HOH A 18 519 18 HOH HOH . E 4 HOH A 19 520 19 HOH HOH . E 4 HOH A 20 521 20 HOH HOH . E 4 HOH A 21 522 21 HOH HOH . E 4 HOH A 22 523 22 HOH HOH . E 4 HOH A 23 524 23 HOH HOH . E 4 HOH A 24 525 24 HOH HOH . E 4 HOH A 25 526 25 HOH HOH . E 4 HOH A 26 527 26 HOH HOH . E 4 HOH A 27 528 27 HOH HOH . E 4 HOH A 28 529 28 HOH HOH . E 4 HOH A 29 530 29 HOH HOH . E 4 HOH A 30 531 30 HOH HOH . E 4 HOH A 31 532 31 HOH HOH . E 4 HOH A 32 533 32 HOH HOH . E 4 HOH A 33 534 33 HOH HOH . E 4 HOH A 34 535 34 HOH HOH . E 4 HOH A 35 536 35 HOH HOH . E 4 HOH A 36 537 36 HOH HOH . E 4 HOH A 37 538 37 HOH HOH . E 4 HOH A 38 539 38 HOH HOH . E 4 HOH A 39 540 39 HOH HOH . E 4 HOH A 40 541 40 HOH HOH . E 4 HOH A 41 542 41 HOH HOH . E 4 HOH A 42 543 42 HOH HOH . E 4 HOH A 43 544 43 HOH HOH . E 4 HOH A 44 545 44 HOH HOH . E 4 HOH A 45 546 45 HOH HOH . E 4 HOH A 46 547 46 HOH HOH . E 4 HOH A 47 548 47 HOH HOH . E 4 HOH A 48 549 48 HOH HOH . E 4 HOH A 49 550 49 HOH HOH . E 4 HOH A 50 551 50 HOH HOH . E 4 HOH A 51 552 51 HOH HOH . E 4 HOH A 52 553 52 HOH HOH . E 4 HOH A 53 554 53 HOH HOH . E 4 HOH A 54 555 54 HOH HOH . E 4 HOH A 55 556 55 HOH HOH . E 4 HOH A 56 557 56 HOH HOH . E 4 HOH A 57 558 57 HOH HOH . E 4 HOH A 58 559 58 HOH HOH . E 4 HOH A 59 560 59 HOH HOH . E 4 HOH A 60 561 60 HOH HOH . E 4 HOH A 61 562 61 HOH HOH . E 4 HOH A 62 563 62 HOH HOH . E 4 HOH A 63 564 63 HOH HOH . E 4 HOH A 64 565 64 HOH HOH . E 4 HOH A 65 566 65 HOH HOH . E 4 HOH A 66 567 66 HOH HOH . E 4 HOH A 67 568 67 HOH HOH . E 4 HOH A 68 569 68 HOH HOH . E 4 HOH A 69 570 69 HOH HOH . E 4 HOH A 70 571 70 HOH HOH . E 4 HOH A 71 572 71 HOH HOH . E 4 HOH A 72 573 72 HOH HOH . E 4 HOH A 73 574 73 HOH HOH . E 4 HOH A 74 575 74 HOH HOH . E 4 HOH A 75 576 75 HOH HOH . E 4 HOH A 76 577 76 HOH HOH . E 4 HOH A 77 578 77 HOH HOH . E 4 HOH A 78 579 78 HOH HOH . E 4 HOH A 79 580 79 HOH HOH . E 4 HOH A 80 581 80 HOH HOH . E 4 HOH A 81 582 81 HOH HOH . E 4 HOH A 82 583 82 HOH HOH . E 4 HOH A 83 584 83 HOH HOH . E 4 HOH A 84 585 84 HOH HOH . E 4 HOH A 85 586 85 HOH HOH . E 4 HOH A 86 587 86 HOH HOH . E 4 HOH A 87 588 87 HOH HOH . E 4 HOH A 88 589 88 HOH HOH . E 4 HOH A 89 590 89 HOH HOH . E 4 HOH A 90 591 90 HOH HOH . E 4 HOH A 91 592 91 HOH HOH . E 4 HOH A 92 593 92 HOH HOH . E 4 HOH A 93 594 93 HOH HOH . E 4 HOH A 94 595 94 HOH HOH . E 4 HOH A 95 596 95 HOH HOH . E 4 HOH A 96 597 96 HOH HOH . E 4 HOH A 97 598 97 HOH HOH . E 4 HOH A 98 599 98 HOH HOH . E 4 HOH A 99 600 99 HOH HOH . E 4 HOH A 100 601 100 HOH HOH . E 4 HOH A 101 602 101 HOH HOH . E 4 HOH A 102 603 102 HOH HOH . E 4 HOH A 103 604 103 HOH HOH . E 4 HOH A 104 605 104 HOH HOH . E 4 HOH A 105 606 105 HOH HOH . E 4 HOH A 106 607 106 HOH HOH . E 4 HOH A 107 608 107 HOH HOH . E 4 HOH A 108 609 108 HOH HOH . E 4 HOH A 109 610 109 HOH HOH . E 4 HOH A 110 611 110 HOH HOH . E 4 HOH A 111 612 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QUE . A . D 3 74.079 40.468 1.927 0.5 40.78 ? C1 QUE 501 A 1 HETATM 2 C C1 QUE . B . D 3 74.089 38.596 2.301 0.5 31.41 ? C1 QUE 501 A 1 HETATM 3 C C2 QUE . A . D 3 73.895 40.241 0.569 0.5 40.41 ? C2 QUE 501 A 1 HETATM 4 C C2 QUE . B . D 3 74.012 38.741 0.919 0.5 31.4 ? C2 QUE 501 A 1 HETATM 5 C C3 QUE . A . D 3 74.182 38.891 0.024 0.5 38.44 ? C3 QUE 501 A 1 HETATM 6 C C3 QUE . B . D 3 74.28 37.561 0.078 0.5 30.82 ? C3 QUE 501 A 1 HETATM 7 C C4 QUE . A . D 3 74.661 37.849 0.956 0.5 38.3 ? C4 QUE 501 A 1 HETATM 8 C C4 QUE . B . D 3 74.628 36.28 0.747 0.5 31.2 ? C4 QUE 501 A 1 HETATM 9 C C5 QUE . A . D 3 74.815 38.165 2.3 0.5 39.89 ? C5 QUE 501 A 1 HETATM 10 C C5 QUE . B . D 3 74.685 36.219 2.14 0.5 32.01 ? C5 QUE 501 A 1 HETATM 11 C C6 QUE . A . D 3 74.523 39.447 2.767 0.5 40.99 ? C6 QUE 501 A 1 HETATM 12 C C6 QUE . B . D 3 74.419 37.366 2.895 0.5 32.6 ? C6 QUE 501 A 1 HETATM 13 C C9 QUE . A . D 3 74.032 38.481 -1.397 0.5 37.49 ? C9 QUE 501 A 1 HETATM 14 C C9 QUE . B . D 3 74.215 37.581 -1.406 0.5 30.59 ? C9 QUE 501 A 1 HETATM 15 C C10 QUE . A . D 3 74.364 37.106 -1.777 0.5 36.14 ? C10 QUE 501 A 1 HETATM 16 C C10 QUE . B . D 3 74.504 36.339 -2.113 0.5 29.97 ? C10 QUE 501 A 1 HETATM 17 C C11 QUE . A . D 3 74.808 36.21 -0.882 0.5 34.71 ? C11 QUE 501 A 1 HETATM 18 C C11 QUE . B . D 3 74.825 35.221 -1.467 0.5 30.81 ? C11 QUE 501 A 1 HETATM 19 C C14 QUE . A . D 3 75.156 34.763 -1.168 0.5 34.19 ? C14 QUE 501 A 1 HETATM 20 C C14 QUE . B . D 3 75.088 33.911 -2.15 0.5 32.27 ? C14 QUE 501 A 1 HETATM 21 C C15 QUE . A . D 3 75.099 34.18 -2.44 0.5 33.45 ? C15 QUE 501 A 1 HETATM 22 C C15 QUE . B . D 3 75.915 33.04 -1.462 0.5 32.93 ? C15 QUE 501 A 1 HETATM 23 C C16 QUE . A . D 3 75.418 32.831 -2.619 0.5 34.34 ? C16 QUE 501 A 1 HETATM 24 C C16 QUE . B . D 3 76.206 31.78 -1.96 0.5 35.3 ? C16 QUE 501 A 1 HETATM 25 C C17 QUE . A . D 3 75.789 32.033 -1.534 0.5 34.76 ? C17 QUE 501 A 1 HETATM 26 C C17 QUE . B . D 3 75.642 31.343 -3.151 0.5 33.97 ? C17 QUE 501 A 1 HETATM 27 C C18 QUE . A . D 3 75.856 32.642 -0.205 0.5 33.55 ? C18 QUE 501 A 1 HETATM 28 C C18 QUE . B . D 3 74.718 32.239 -3.88 0.5 33.64 ? C18 QUE 501 A 1 HETATM 29 C C19 QUE . A . D 3 75.533 33.984 -0.055 0.5 33.22 ? C19 QUE 501 A 1 HETATM 30 C C19 QUE . B . D 3 74.467 33.513 -3.351 0.5 33.09 ? C19 QUE 501 A 1 HETATM 31 O O12 QUE . A . D 3 74.946 36.595 0.505 0.5 35.46 ? O12 QUE 501 A 1 HETATM 32 O O12 QUE . B . D 3 74.885 35.176 -0.004 0.5 31.46 ? O12 QUE 501 A 1 HETATM 33 O O13 QUE . A . D 3 73.65 39.245 -2.252 0.5 38.95 ? O13 QUE 501 A 1 HETATM 34 O O13 QUE . B . D 3 73.938 38.578 -2.046 0.5 30.84 ? O13 QUE 501 A 1 HETATM 35 O O23 QUE . A . D 3 76.226 31.87 0.801 0.5 33.71 ? O23 QUE 501 A 1 HETATM 36 O O23 QUE . B . D 3 74.164 31.801 -5.003 0.5 33.35 ? O23 QUE 501 A 1 HETATM 37 O O24 QUE . A . D 3 76.117 30.743 -1.646 0.5 37.1 ? O24 QUE 501 A 1 HETATM 38 O O24 QUE . B . D 3 75.933 30.138 -3.605 0.5 34.23 ? O24 QUE 501 A 1 HETATM 39 O O27 QUE . A . D 3 74.211 36.81 -3.07 0.5 35.14 ? O27 QUE 501 A 1 HETATM 40 O O27 QUE . B . D 3 74.443 36.378 -3.441 0.5 29.71 ? O27 QUE 501 A 1 HETATM 41 O O29 QUE . A . D 3 74.693 39.716 4.064 0.5 42.03 ? O29 QUE 501 A 1 HETATM 42 O O29 QUE . B . D 3 74.486 37.304 4.233 0.5 33.34 ? O29 QUE 501 A 1 HETATM 43 O O30 QUE . A . D 3 73.463 41.23 -0.187 0.5 42.57 ? O30 QUE 501 A 1 HETATM 44 O O30 QUE . B . D 3 73.705 39.901 0.38 0.5 32.5 ? O30 QUE 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #