data_2O4C
#
_model_server_result.job_id            kejHo4IrsQDlMsZTxTDFaA 
_model_server_result.datetime_utc      '2024-11-04 23:08:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o4c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2647}' 
#
_entry.id    2O4C 
#
_exptl.entry_id    2O4C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2O4C 
_cell.length_a            84.914 
_cell.length_b            101.63 
_cell.length_c            142.994 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O4C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 65 B CYS 65 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2O4C 
_atom_sites.fract_transf_matrix[1][1]    0.011777 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006993 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 900 900 PO4 PO4 . 
D 3 NAD A 1 1002 2 NAD NAD . 
E 3 NAD B 1 1001 1 NAD NAD . 
F 4 TLA B 1 500 500 TLA TLA . 
G 5 GOL B 1 2647 2647 GOL GOL . 
H 6 HOH A 1 1003 1 HOH HOH . 
H 6 HOH A 2 1004 2 HOH HOH . 
H 6 HOH A 3 1005 3 HOH HOH . 
H 6 HOH A 4 1006 6 HOH HOH . 
H 6 HOH A 5 1007 7 HOH HOH . 
H 6 HOH A 6 1008 8 HOH HOH . 
H 6 HOH A 7 1009 9 HOH HOH . 
H 6 HOH A 8 1010 10 HOH HOH . 
H 6 HOH A 9 1011 11 HOH HOH . 
H 6 HOH A 10 1012 13 HOH HOH . 
H 6 HOH A 11 1013 15 HOH HOH . 
H 6 HOH A 12 1014 16 HOH HOH . 
H 6 HOH A 13 1015 17 HOH HOH . 
H 6 HOH A 14 1016 18 HOH HOH . 
H 6 HOH A 15 1017 20 HOH HOH . 
H 6 HOH A 16 1018 21 HOH HOH . 
H 6 HOH A 17 1019 22 HOH HOH . 
H 6 HOH A 18 1020 23 HOH HOH . 
H 6 HOH A 19 1021 24 HOH HOH . 
H 6 HOH A 20 1022 25 HOH HOH . 
H 6 HOH A 21 1023 26 HOH HOH . 
H 6 HOH A 22 1024 29 HOH HOH . 
H 6 HOH A 23 1025 30 HOH HOH . 
H 6 HOH A 24 1026 31 HOH HOH . 
H 6 HOH A 25 1027 33 HOH HOH . 
H 6 HOH A 26 1028 35 HOH HOH . 
H 6 HOH A 27 1029 36 HOH HOH . 
H 6 HOH A 28 1030 38 HOH HOH . 
H 6 HOH A 29 1031 39 HOH HOH . 
H 6 HOH A 30 1032 40 HOH HOH . 
H 6 HOH A 31 1033 41 HOH HOH . 
H 6 HOH A 32 1034 44 HOH HOH . 
H 6 HOH A 33 1035 45 HOH HOH . 
H 6 HOH A 34 1036 47 HOH HOH . 
H 6 HOH A 35 1037 48 HOH HOH . 
H 6 HOH A 36 1038 50 HOH HOH . 
H 6 HOH A 37 1039 51 HOH HOH . 
H 6 HOH A 38 1040 52 HOH HOH . 
H 6 HOH A 39 1041 54 HOH HOH . 
H 6 HOH A 40 1042 55 HOH HOH . 
H 6 HOH A 41 1043 57 HOH HOH . 
H 6 HOH A 42 1044 60 HOH HOH . 
H 6 HOH A 43 1045 61 HOH HOH . 
H 6 HOH A 44 1046 62 HOH HOH . 
H 6 HOH A 45 1047 64 HOH HOH . 
H 6 HOH A 46 1048 67 HOH HOH . 
H 6 HOH A 47 1049 68 HOH HOH . 
H 6 HOH A 48 1050 69 HOH HOH . 
H 6 HOH A 49 1051 70 HOH HOH . 
H 6 HOH A 50 1052 72 HOH HOH . 
H 6 HOH A 51 1053 74 HOH HOH . 
H 6 HOH A 52 1054 75 HOH HOH . 
H 6 HOH A 53 1055 76 HOH HOH . 
H 6 HOH A 54 1056 77 HOH HOH . 
H 6 HOH A 55 1057 78 HOH HOH . 
H 6 HOH A 56 1058 79 HOH HOH . 
H 6 HOH A 57 1059 80 HOH HOH . 
H 6 HOH A 58 1060 81 HOH HOH . 
H 6 HOH A 59 1061 83 HOH HOH . 
H 6 HOH A 60 1062 84 HOH HOH . 
H 6 HOH A 61 1063 87 HOH HOH . 
H 6 HOH A 62 1064 88 HOH HOH . 
H 6 HOH A 63 1065 92 HOH HOH . 
H 6 HOH A 64 1066 93 HOH HOH . 
H 6 HOH A 65 1067 94 HOH HOH . 
H 6 HOH A 66 1068 95 HOH HOH . 
H 6 HOH A 67 1069 96 HOH HOH . 
H 6 HOH A 68 1070 98 HOH HOH . 
H 6 HOH A 69 1071 100 HOH HOH . 
H 6 HOH A 70 1072 102 HOH HOH . 
H 6 HOH A 71 1073 103 HOH HOH . 
H 6 HOH A 72 1074 106 HOH HOH . 
H 6 HOH A 73 1075 107 HOH HOH . 
H 6 HOH A 74 1076 109 HOH HOH . 
H 6 HOH A 75 1077 110 HOH HOH . 
H 6 HOH A 76 1078 112 HOH HOH . 
H 6 HOH A 77 1079 114 HOH HOH . 
H 6 HOH A 78 1080 115 HOH HOH . 
H 6 HOH A 79 1081 120 HOH HOH . 
H 6 HOH A 80 1082 123 HOH HOH . 
H 6 HOH A 81 1083 124 HOH HOH . 
H 6 HOH A 82 1084 126 HOH HOH . 
H 6 HOH A 83 1085 127 HOH HOH . 
H 6 HOH A 84 1086 128 HOH HOH . 
H 6 HOH A 85 1087 131 HOH HOH . 
H 6 HOH A 86 1088 132 HOH HOH . 
H 6 HOH A 87 1089 133 HOH HOH . 
H 6 HOH A 88 1090 134 HOH HOH . 
H 6 HOH A 89 1091 135 HOH HOH . 
H 6 HOH A 90 1092 137 HOH HOH . 
H 6 HOH A 91 1093 140 HOH HOH . 
H 6 HOH A 92 1094 141 HOH HOH . 
H 6 HOH A 93 1095 142 HOH HOH . 
H 6 HOH A 94 1096 143 HOH HOH . 
H 6 HOH A 95 1097 146 HOH HOH . 
H 6 HOH A 96 1098 147 HOH HOH . 
H 6 HOH A 97 1099 148 HOH HOH . 
H 6 HOH A 98 1100 149 HOH HOH . 
H 6 HOH A 99 1101 150 HOH HOH . 
H 6 HOH A 100 1102 156 HOH HOH . 
H 6 HOH A 101 1103 157 HOH HOH . 
H 6 HOH A 102 1104 158 HOH HOH . 
H 6 HOH A 103 1105 161 HOH HOH . 
H 6 HOH A 104 1106 162 HOH HOH . 
H 6 HOH A 105 1107 164 HOH HOH . 
H 6 HOH A 106 1108 165 HOH HOH . 
H 6 HOH A 107 1109 167 HOH HOH . 
I 6 HOH B 1 2648 4 HOH HOH . 
I 6 HOH B 2 2649 5 HOH HOH . 
I 6 HOH B 3 2650 12 HOH HOH . 
I 6 HOH B 4 2651 14 HOH HOH . 
I 6 HOH B 5 2652 19 HOH HOH . 
I 6 HOH B 6 2653 27 HOH HOH . 
I 6 HOH B 7 2654 28 HOH HOH . 
I 6 HOH B 8 2655 32 HOH HOH . 
I 6 HOH B 9 2656 34 HOH HOH . 
I 6 HOH B 10 2657 37 HOH HOH . 
I 6 HOH B 11 2658 42 HOH HOH . 
I 6 HOH B 12 2659 43 HOH HOH . 
I 6 HOH B 13 2660 46 HOH HOH . 
I 6 HOH B 14 2661 49 HOH HOH . 
I 6 HOH B 15 2662 53 HOH HOH . 
I 6 HOH B 16 2663 56 HOH HOH . 
I 6 HOH B 17 2664 58 HOH HOH . 
I 6 HOH B 18 2665 59 HOH HOH . 
I 6 HOH B 19 2666 63 HOH HOH . 
I 6 HOH B 20 2667 65 HOH HOH . 
I 6 HOH B 21 2668 66 HOH HOH . 
I 6 HOH B 22 2669 71 HOH HOH . 
I 6 HOH B 23 2670 73 HOH HOH . 
I 6 HOH B 24 2671 82 HOH HOH . 
I 6 HOH B 25 2672 85 HOH HOH . 
I 6 HOH B 26 2673 86 HOH HOH . 
I 6 HOH B 27 2674 89 HOH HOH . 
I 6 HOH B 28 2675 90 HOH HOH . 
I 6 HOH B 29 2676 91 HOH HOH . 
I 6 HOH B 30 2677 97 HOH HOH . 
I 6 HOH B 31 2678 99 HOH HOH . 
I 6 HOH B 32 2679 101 HOH HOH . 
I 6 HOH B 33 2680 104 HOH HOH . 
I 6 HOH B 34 2681 105 HOH HOH . 
I 6 HOH B 35 2682 108 HOH HOH . 
I 6 HOH B 36 2683 111 HOH HOH . 
I 6 HOH B 37 2684 113 HOH HOH . 
I 6 HOH B 38 2685 116 HOH HOH . 
I 6 HOH B 39 2686 117 HOH HOH . 
I 6 HOH B 40 2687 118 HOH HOH . 
I 6 HOH B 41 2688 119 HOH HOH . 
I 6 HOH B 42 2689 121 HOH HOH . 
I 6 HOH B 43 2690 122 HOH HOH . 
I 6 HOH B 44 2691 125 HOH HOH . 
I 6 HOH B 45 2692 129 HOH HOH . 
I 6 HOH B 46 2693 130 HOH HOH . 
I 6 HOH B 47 2694 136 HOH HOH . 
I 6 HOH B 48 2695 138 HOH HOH . 
I 6 HOH B 49 2696 139 HOH HOH . 
I 6 HOH B 50 2697 144 HOH HOH . 
I 6 HOH B 51 2698 145 HOH HOH . 
I 6 HOH B 52 2699 151 HOH HOH . 
I 6 HOH B 53 2700 152 HOH HOH . 
I 6 HOH B 54 2701 153 HOH HOH . 
I 6 HOH B 55 2702 154 HOH HOH . 
I 6 HOH B 56 2703 155 HOH HOH . 
I 6 HOH B 57 2704 159 HOH HOH . 
I 6 HOH B 58 2705 160 HOH HOH . 
I 6 HOH B 59 2706 163 HOH HOH . 
I 6 HOH B 60 2707 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 46.519 69.251 21.372 1 51.81 ? C1 GOL 2647 B 1 
HETATM 2 O O1 GOL . . . G 5 46.383 70.631 21.67 1 50.45 ? O1 GOL 2647 B 1 
HETATM 3 C C2 GOL . . . G 5 47.95 68.991 20.916 1 52.54 ? C2 GOL 2647 B 1 
HETATM 4 O O2 GOL . . . G 5 48.852 69.38 21.957 1 51.96 ? O2 GOL 2647 B 1 
HETATM 5 C C3 GOL . . . G 5 48.111 67.505 20.594 1 52.31 ? C3 GOL 2647 B 1 
HETATM 6 O O3 GOL . . . G 5 48.335 66.771 21.796 1 53.05 ? O3 GOL 2647 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#