data_2O4H # _model_server_result.job_id VkCnf_IneQS81n7zUX7gOw _model_server_result.datetime_utc '2024-10-14 04:25:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2O4H # _exptl.entry_id 2O4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 211.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[HYDROXY(METHYL)PHOSPHORYL]-L-ASPARTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O4H _cell.length_a 143.081 _cell.length_b 143.081 _cell.length_c 104.604 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 21 A HIS 21 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A OE1 GLU 24 A GLU 24 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 A ND1 HIS 116 A HIS 116 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 B ND1 HIS 21 B HIS 21 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 B OE1 GLU 24 B GLU 24 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc6 B ND1 HIS 116 B HIS 116 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 E ZN ZN . B ZN 401 1_555 F OAG AS9 . B AS9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C5 H10 N O6 P' _chem_comp.formula_weight 211.11 _chem_comp.id AS9 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[HYDROXY(METHYL)PHOSPHORYL]-L-ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 'N-PHOSPHONOMETHYL-L-ASPARTIC ACID;(2S)-2-(HYDROPEROXY(METHOXY)PHOSPHORYLAMINO)SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA PAM AS9 sing 39 n n CAA HAA1 AS9 sing 40 n n CAA HAA2 AS9 sing 41 n n CAA HAA3 AS9 sing 42 n n PAM OAG AS9 doub 43 n n PAM N AS9 sing 44 n n PAM OAD AS9 sing 45 n n OAD HOAD AS9 sing 46 n n N CA AS9 sing 47 n n N H AS9 sing 48 n n CA C AS9 sing 49 n n CA CB AS9 sing 50 n n CA HA AS9 sing 51 n n C O AS9 doub 52 n n C OXT AS9 sing 53 n n OXT HXT AS9 sing 54 n n CB CG AS9 sing 55 n n CB HB2 AS9 sing 56 n n CB HB3 AS9 sing 57 n n CG OD2 AS9 doub 58 n n CG OD1 AS9 sing 59 n n OD1 HD1 AS9 sing 60 n n # _atom_sites.entry_id 2O4H _atom_sites.fract_transf_matrix[1][1] 0.006989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 101 ZN ZN . D 3 AS9 A 1 501 1 AS9 AS9 . E 2 ZN B 1 401 102 ZN ZN . F 3 AS9 B 1 501 2 AS9 AS9 . G 4 HOH A 1 502 1 HOH HOH . G 4 HOH A 2 503 4 HOH HOH . G 4 HOH A 3 504 5 HOH HOH . G 4 HOH A 4 505 6 HOH HOH . G 4 HOH A 5 506 7 HOH HOH . G 4 HOH A 6 507 8 HOH HOH . G 4 HOH A 7 508 9 HOH HOH . G 4 HOH A 8 509 11 HOH HOH . G 4 HOH A 9 510 13 HOH HOH . G 4 HOH A 10 511 14 HOH HOH . G 4 HOH A 11 512 17 HOH HOH . G 4 HOH A 12 513 21 HOH HOH . G 4 HOH A 13 514 26 HOH HOH . G 4 HOH A 14 515 28 HOH HOH . G 4 HOH A 15 516 29 HOH HOH . G 4 HOH A 16 517 32 HOH HOH . G 4 HOH A 17 518 35 HOH HOH . G 4 HOH A 18 519 37 HOH HOH . G 4 HOH A 19 520 38 HOH HOH . G 4 HOH A 20 521 39 HOH HOH . G 4 HOH A 21 522 40 HOH HOH . G 4 HOH A 22 523 42 HOH HOH . G 4 HOH A 23 524 43 HOH HOH . G 4 HOH A 24 525 44 HOH HOH . G 4 HOH A 25 526 47 HOH HOH . G 4 HOH A 26 527 49 HOH HOH . G 4 HOH A 27 528 50 HOH HOH . G 4 HOH A 28 529 51 HOH HOH . G 4 HOH A 29 530 52 HOH HOH . G 4 HOH A 30 531 53 HOH HOH . G 4 HOH A 31 532 54 HOH HOH . G 4 HOH A 32 533 56 HOH HOH . G 4 HOH A 33 534 57 HOH HOH . G 4 HOH A 34 535 61 HOH HOH . G 4 HOH A 35 536 65 HOH HOH . G 4 HOH A 36 537 66 HOH HOH . H 4 HOH B 1 502 2 HOH HOH . H 4 HOH B 2 503 3 HOH HOH . H 4 HOH B 3 504 10 HOH HOH . H 4 HOH B 4 505 12 HOH HOH . H 4 HOH B 5 506 15 HOH HOH . H 4 HOH B 6 507 16 HOH HOH . H 4 HOH B 7 508 18 HOH HOH . H 4 HOH B 8 509 19 HOH HOH . H 4 HOH B 9 510 20 HOH HOH . H 4 HOH B 10 511 22 HOH HOH . H 4 HOH B 11 512 23 HOH HOH . H 4 HOH B 12 513 24 HOH HOH . H 4 HOH B 13 514 25 HOH HOH . H 4 HOH B 14 515 27 HOH HOH . H 4 HOH B 15 516 30 HOH HOH . H 4 HOH B 16 517 31 HOH HOH . H 4 HOH B 17 518 33 HOH HOH . H 4 HOH B 18 519 34 HOH HOH . H 4 HOH B 19 520 36 HOH HOH . H 4 HOH B 20 521 41 HOH HOH . H 4 HOH B 21 522 45 HOH HOH . H 4 HOH B 22 523 46 HOH HOH . H 4 HOH B 23 524 48 HOH HOH . H 4 HOH B 24 525 55 HOH HOH . H 4 HOH B 25 526 58 HOH HOH . H 4 HOH B 26 527 59 HOH HOH . H 4 HOH B 27 528 60 HOH HOH . H 4 HOH B 28 529 62 HOH HOH . H 4 HOH B 29 530 63 HOH HOH . H 4 HOH B 30 531 64 HOH HOH . H 4 HOH B 31 532 67 HOH HOH . H 4 HOH B 32 533 68 HOH HOH . H 4 HOH B 33 534 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA AS9 . . . D 3 -41.971 9.621 -39.32 1 68.04 ? CAA AS9 501 A 1 HETATM 2 P PAM AS9 . . . D 3 -42.718 9.512 -40.947 1 68.34 ? PAM AS9 501 A 1 HETATM 3 O OAG AS9 . . . D 3 -44.231 8.961 -40.8 1 67.66 ? OAG AS9 501 A 1 HETATM 4 O OAD AS9 . . . D 3 -42.722 10.844 -41.563 1 67.99 ? OAD AS9 501 A 1 HETATM 5 N N AS9 . . . D 3 -41.877 8.36 -41.709 1 68.91 ? N AS9 501 A 1 HETATM 6 C CA AS9 . . . D 3 -42.463 7.877 -42.976 1 69.63 ? CA AS9 501 A 1 HETATM 7 C C AS9 . . . D 3 -43.407 6.655 -42.757 1 70.06 ? C AS9 501 A 1 HETATM 8 O OXT AS9 . . . D 3 -44.422 6.584 -43.477 1 70.58 ? OXT AS9 501 A 1 HETATM 9 O O AS9 . . . D 3 -43.117 5.806 -41.883 1 70.37 ? O AS9 501 A 1 HETATM 10 C CB AS9 . . . D 3 -41.284 7.489 -43.88 1 69.56 ? CB AS9 501 A 1 HETATM 11 C CG AS9 . . . D 3 -41.385 8.021 -45.32 1 69.64 ? CG AS9 501 A 1 HETATM 12 O OD2 AS9 . . . D 3 -41.831 9.186 -45.504 1 69.31 ? OD2 AS9 501 A 1 HETATM 13 O OD1 AS9 . . . D 3 -40.99 7.232 -46.208 1 68.41 ? OD1 AS9 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #