data_2O4R # _model_server_result.job_id A2MFS8RJZBIw2nelezI5pg _model_server_result.datetime_utc '2024-11-16 11:50:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2O4R # _exptl.entry_id 2O4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.621 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17E)-17-(5-hydroxy-1,5-dimethylhexylidene)-2-methylene-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96 _cell.angle_gamma 90 _cell.entry_id 2O4R _cell.length_a 154 _cell.length_b 43 _cell.length_c 42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 154 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H42 O3' _chem_comp.formula_weight 414.621 _chem_comp.id VD5 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17E)-17-(5-hydroxy-1,5-dimethylhexylidene)-2-methylene-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 VD5 sing 376 n n O3 C25 VD5 sing 377 n n C22 C20 VD5 sing 378 n n C22 C23 VD5 sing 379 n n C26 C25 VD5 sing 380 n n C20 C17 VD5 doub 381 e n C24 C25 VD5 sing 382 n n C24 C23 VD5 sing 383 n n C25 C27 VD5 sing 384 n n C12 C11 VD5 sing 385 n n C12 C13 VD5 sing 386 n n C17 C13 VD5 sing 387 n n C17 C16 VD5 sing 388 n n C11 C9 VD5 sing 389 n n C13 C14 VD5 sing 390 n n C13 C18 VD5 sing 391 n n C16 C15 VD5 sing 392 n n C9 C8 VD5 sing 393 n n C14 C15 VD5 sing 394 n n C14 C8 VD5 sing 395 n n C8 C7 VD5 doub 396 e n C7 C6 VD5 sing 397 n n C6 C5 VD5 doub 398 n n C5 C4 VD5 sing 399 n n C5 C10 VD5 sing 400 n n C4 C3 VD5 sing 401 n n C10 C1 VD5 sing 402 n n O2 C3 VD5 sing 403 n n C3 C2 VD5 sing 404 n n C1 C2 VD5 sing 405 n n C1 O1 VD5 sing 406 n n C2 C28 VD5 doub 407 n n O2 HO2 VD5 sing 408 n n C3 H3 VD5 sing 409 n n C28 H281 VD5 sing 410 n n C28 H282 VD5 sing 411 n n C1 H1 VD5 sing 412 n n O1 HO1 VD5 sing 413 n n C10 H101 VD5 sing 414 n n C10 H102 VD5 sing 415 n n C4 H41 VD5 sing 416 n n C4 H42 VD5 sing 417 n n C6 H6 VD5 sing 418 n n C7 H7 VD5 sing 419 n n C9 H91 VD5 sing 420 n n C9 H92 VD5 sing 421 n n C11 H111 VD5 sing 422 n n C11 H112 VD5 sing 423 n n C12 H121 VD5 sing 424 n n C12 H122 VD5 sing 425 n n C14 H14 VD5 sing 426 n n C18 H181 VD5 sing 427 n n C18 H182 VD5 sing 428 n n C18 H183 VD5 sing 429 n n C15 H151 VD5 sing 430 n n C15 H152 VD5 sing 431 n n C16 H161 VD5 sing 432 n n C16 H162 VD5 sing 433 n n C21 H211 VD5 sing 434 n n C21 H212 VD5 sing 435 n n C21 H213 VD5 sing 436 n n C22 H221 VD5 sing 437 n n C22 H222 VD5 sing 438 n n C23 H231 VD5 sing 439 n n C23 H232 VD5 sing 440 n n C24 H241 VD5 sing 441 n n C24 H242 VD5 sing 442 n n C27 H271 VD5 sing 443 n n C27 H272 VD5 sing 444 n n C27 H273 VD5 sing 445 n n C26 H261 VD5 sing 446 n n C26 H262 VD5 sing 447 n n C26 H263 VD5 sing 448 n n O3 HO3 VD5 sing 449 n n # _atom_sites.entry_id 2O4R _atom_sites.fract_transf_matrix[1][1] 0.006494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VD5 A 1 500 500 VD5 VD5 . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 36 HOH HOH . D 4 HOH A 36 536 37 HOH HOH . D 4 HOH A 37 537 38 HOH HOH . D 4 HOH A 38 538 39 HOH HOH . D 4 HOH A 39 539 40 HOH HOH . D 4 HOH A 40 540 41 HOH HOH . D 4 HOH A 41 541 42 HOH HOH . D 4 HOH A 42 542 43 HOH HOH . D 4 HOH A 43 543 44 HOH HOH . D 4 HOH A 44 544 45 HOH HOH . D 4 HOH A 45 545 46 HOH HOH . D 4 HOH A 46 546 47 HOH HOH . D 4 HOH A 47 547 48 HOH HOH . D 4 HOH A 48 548 49 HOH HOH . D 4 HOH A 49 549 50 HOH HOH . D 4 HOH A 50 550 51 HOH HOH . D 4 HOH A 51 551 52 HOH HOH . D 4 HOH A 52 552 53 HOH HOH . D 4 HOH A 53 553 54 HOH HOH . D 4 HOH A 54 554 55 HOH HOH . D 4 HOH A 55 555 56 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 58 HOH HOH . D 4 HOH A 58 558 59 HOH HOH . D 4 HOH A 59 559 60 HOH HOH . D 4 HOH A 60 560 61 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 63 HOH HOH . D 4 HOH A 63 563 65 HOH HOH . D 4 HOH A 64 564 66 HOH HOH . D 4 HOH A 65 565 67 HOH HOH . D 4 HOH A 66 566 68 HOH HOH . D 4 HOH A 67 567 70 HOH HOH . D 4 HOH A 68 568 71 HOH HOH . D 4 HOH A 69 569 72 HOH HOH . D 4 HOH A 70 570 73 HOH HOH . D 4 HOH A 71 571 74 HOH HOH . D 4 HOH A 72 572 75 HOH HOH . D 4 HOH A 73 573 76 HOH HOH . D 4 HOH A 74 574 77 HOH HOH . D 4 HOH A 75 575 78 HOH HOH . D 4 HOH A 76 576 79 HOH HOH . D 4 HOH A 77 577 80 HOH HOH . D 4 HOH A 78 578 81 HOH HOH . D 4 HOH A 79 579 82 HOH HOH . D 4 HOH A 80 580 83 HOH HOH . D 4 HOH A 81 581 84 HOH HOH . D 4 HOH A 82 582 85 HOH HOH . D 4 HOH A 83 583 86 HOH HOH . D 4 HOH A 84 584 87 HOH HOH . D 4 HOH A 85 585 89 HOH HOH . D 4 HOH A 86 586 90 HOH HOH . D 4 HOH A 87 587 91 HOH HOH . D 4 HOH A 88 588 92 HOH HOH . D 4 HOH A 89 589 93 HOH HOH . D 4 HOH A 90 590 94 HOH HOH . D 4 HOH A 91 591 95 HOH HOH . D 4 HOH A 92 592 96 HOH HOH . D 4 HOH A 93 593 97 HOH HOH . D 4 HOH A 94 594 98 HOH HOH . D 4 HOH A 95 595 99 HOH HOH . D 4 HOH A 96 596 100 HOH HOH . D 4 HOH A 97 597 101 HOH HOH . D 4 HOH A 98 598 102 HOH HOH . D 4 HOH A 99 599 103 HOH HOH . D 4 HOH A 100 600 104 HOH HOH . D 4 HOH A 101 601 105 HOH HOH . D 4 HOH A 102 602 106 HOH HOH . D 4 HOH A 103 603 107 HOH HOH . D 4 HOH A 104 604 108 HOH HOH . D 4 HOH A 105 605 109 HOH HOH . D 4 HOH A 106 606 110 HOH HOH . D 4 HOH A 107 607 111 HOH HOH . D 4 HOH A 108 608 112 HOH HOH . D 4 HOH A 109 609 113 HOH HOH . D 4 HOH A 110 610 114 HOH HOH . D 4 HOH A 111 611 115 HOH HOH . D 4 HOH A 112 612 116 HOH HOH . D 4 HOH A 113 613 117 HOH HOH . D 4 HOH A 114 614 118 HOH HOH . D 4 HOH A 115 615 119 HOH HOH . D 4 HOH A 116 616 120 HOH HOH . D 4 HOH A 117 617 121 HOH HOH . D 4 HOH A 118 618 122 HOH HOH . D 4 HOH A 119 619 123 HOH HOH . D 4 HOH A 120 620 124 HOH HOH . D 4 HOH A 121 621 125 HOH HOH . D 4 HOH A 122 622 126 HOH HOH . D 4 HOH A 123 623 127 HOH HOH . D 4 HOH A 124 624 128 HOH HOH . D 4 HOH A 125 625 129 HOH HOH . D 4 HOH A 126 626 130 HOH HOH . D 4 HOH A 127 627 131 HOH HOH . D 4 HOH A 128 628 133 HOH HOH . D 4 HOH A 129 629 134 HOH HOH . D 4 HOH A 130 630 135 HOH HOH . D 4 HOH A 131 631 136 HOH HOH . D 4 HOH A 132 632 137 HOH HOH . D 4 HOH A 133 633 138 HOH HOH . D 4 HOH A 134 634 139 HOH HOH . D 4 HOH A 135 635 140 HOH HOH . D 4 HOH A 136 636 141 HOH HOH . D 4 HOH A 137 637 142 HOH HOH . D 4 HOH A 138 638 143 HOH HOH . D 4 HOH A 139 639 144 HOH HOH . D 4 HOH A 140 640 145 HOH HOH . D 4 HOH A 141 641 146 HOH HOH . D 4 HOH A 142 642 147 HOH HOH . D 4 HOH A 143 643 148 HOH HOH . D 4 HOH A 144 644 149 HOH HOH . D 4 HOH A 145 645 150 HOH HOH . D 4 HOH A 146 646 151 HOH HOH . D 4 HOH A 147 647 152 HOH HOH . D 4 HOH A 148 648 153 HOH HOH . D 4 HOH A 149 649 154 HOH HOH . D 4 HOH A 150 650 155 HOH HOH . D 4 HOH A 151 651 156 HOH HOH . D 4 HOH A 152 652 157 HOH HOH . D 4 HOH A 153 653 158 HOH HOH . D 4 HOH A 154 654 159 HOH HOH . D 4 HOH A 155 655 160 HOH HOH . D 4 HOH A 156 656 161 HOH HOH . D 4 HOH A 157 657 162 HOH HOH . D 4 HOH A 158 658 163 HOH HOH . D 4 HOH A 159 659 164 HOH HOH . D 4 HOH A 160 660 165 HOH HOH . D 4 HOH A 161 661 166 HOH HOH . E 4 HOH C 1 35 35 HOH HOH . E 4 HOH C 2 64 64 HOH HOH . E 4 HOH C 3 69 69 HOH HOH . E 4 HOH C 4 88 88 HOH HOH . E 4 HOH C 5 132 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 VD5 . . . C 3 58.641 8.112 1.129 1 16.47 ? O2 VD5 500 A 1 HETATM 2 C C3 VD5 . . . C 3 60.072 8.151 1.171 1 16.92 ? C3 VD5 500 A 1 HETATM 3 C C2 VD5 . . . C 3 60.499 6.942 1.97 1 16.4 ? C2 VD5 500 A 1 HETATM 4 C C28 VD5 . . . C 3 61.118 7.043 3.142 1 13.22 ? C28 VD5 500 A 1 HETATM 5 C C1 VD5 . . . C 3 60.155 5.61 1.429 1 16.12 ? C1 VD5 500 A 1 HETATM 6 O O1 VD5 . . . C 3 60.625 4.631 2.366 1 15.34 ? O1 VD5 500 A 1 HETATM 7 C C10 VD5 . . . C 3 60.82 5.478 0.038 1 17.63 ? C10 VD5 500 A 1 HETATM 8 C C4 VD5 . . . C 3 60.578 8.086 -0.267 1 18.37 ? C4 VD5 500 A 1 HETATM 9 C C5 VD5 . . . C 3 60.554 6.688 -0.861 1 17.95 ? C5 VD5 500 A 1 HETATM 10 C C6 VD5 . . . C 3 60.319 6.559 -2.204 1 17.45 ? C6 VD5 500 A 1 HETATM 11 C C7 VD5 . . . C 3 60.319 5.243 -2.888 1 18.49 ? C7 VD5 500 A 1 HETATM 12 C C8 VD5 . . . C 3 60.495 5.138 -4.246 1 18.26 ? C8 VD5 500 A 1 HETATM 13 C C9 VD5 . . . C 3 60.67 6.37 -5.136 1 20.16 ? C9 VD5 500 A 1 HETATM 14 C C11 VD5 . . . C 3 61.924 6.213 -6.016 1 21.54 ? C11 VD5 500 A 1 HETATM 15 C C12 VD5 . . . C 3 62.156 4.798 -6.619 1 17.72 ? C12 VD5 500 A 1 HETATM 16 C C14 VD5 . . . C 3 60.607 3.814 -5.011 1 19.81 ? C14 VD5 500 A 1 HETATM 17 C C13 VD5 . . . C 3 62.039 3.68 -5.563 1 18.41 ? C13 VD5 500 A 1 HETATM 18 C C18 VD5 . . . C 3 63.138 3.765 -4.474 1 19 ? C18 VD5 500 A 1 HETATM 19 C C15 VD5 . . . C 3 60.283 2.458 -4.38 1 19.69 ? C15 VD5 500 A 1 HETATM 20 C C16 VD5 . . . C 3 61.031 1.433 -5.285 1 16.99 ? C16 VD5 500 A 1 HETATM 21 C C17 VD5 . . . C 3 62.08 2.235 -6.034 1 17.94 ? C17 VD5 500 A 1 HETATM 22 C C20 VD5 . . . C 3 62.926 1.715 -6.97 1 19.11 ? C20 VD5 500 A 1 HETATM 23 C C21 VD5 . . . C 3 63.968 2.533 -7.707 1 17.53 ? C21 VD5 500 A 1 HETATM 24 C C22 VD5 . . . C 3 62.889 0.263 -7.387 1 18.47 ? C22 VD5 500 A 1 HETATM 25 C C23 VD5 . . . C 3 63.767 -0.575 -6.467 1 18.67 ? C23 VD5 500 A 1 HETATM 26 C C24 VD5 . . . C 3 65.238 -0.43 -6.875 1 18.03 ? C24 VD5 500 A 1 HETATM 27 C C25 VD5 . . . C 3 66.037 -1.695 -6.622 1 15.84 ? C25 VD5 500 A 1 HETATM 28 C C27 VD5 . . . C 3 66.001 -2.175 -5.159 1 18.09 ? C27 VD5 500 A 1 HETATM 29 C C26 VD5 . . . C 3 67.482 -1.399 -6.975 1 18.28 ? C26 VD5 500 A 1 HETATM 30 O O3 VD5 . . . C 3 65.513 -2.745 -7.444 1 19.05 ? O3 VD5 500 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #