data_2O53 # _model_server_result.job_id gwo3SyVa2TqLNDAH4sGAKA _model_server_result.datetime_utc '2025-09-04 09:59:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":316}' # _entry.id 2O53 # _exptl.entry_id 2O53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O53 _cell.length_a 143.794 _cell.length_b 143.794 _cell.length_c 104.076 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 21 A HIS 21 1_555 C ZN ZN . A ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A OE1 GLU 24 A GLU 24 1_555 C ZN ZN . A ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A ND1 HIS 116 A HIS 116 1_555 C ZN ZN . A ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc4 C ZN ZN . A ZN 314 1_555 D O4 PO4 . A PO4 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc5 B ND1 HIS 21 B HIS 21 1_555 F ZN ZN . B ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc6 B OE1 GLU 24 B GLU 24 1_555 F ZN ZN . B ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc7 B ND1 HIS 116 B HIS 116 1_555 F ZN ZN . B ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 F ZN ZN . B ZN 314 1_555 G O1 PO4 . B PO4 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 2O53 _atom_sites.fract_transf_matrix[1][1] 0.006954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 314 101 ZN ZN . D 3 PO4 A 1 315 201 PO4 PO4 . E 3 PO4 A 1 316 202 PO4 PO4 . F 2 ZN B 1 314 102 ZN ZN . G 3 PO4 B 1 315 203 PO4 PO4 . H 3 PO4 B 1 316 204 PO4 PO4 . I 4 HOH A 1 317 1 HOH HOH . I 4 HOH A 2 318 5 HOH HOH . I 4 HOH A 3 319 6 HOH HOH . I 4 HOH A 4 320 7 HOH HOH . I 4 HOH A 5 321 8 HOH HOH . I 4 HOH A 6 322 10 HOH HOH . I 4 HOH A 7 323 14 HOH HOH . I 4 HOH A 8 324 15 HOH HOH . I 4 HOH A 9 325 16 HOH HOH . I 4 HOH A 10 326 17 HOH HOH . I 4 HOH A 11 327 22 HOH HOH . I 4 HOH A 12 328 27 HOH HOH . I 4 HOH A 13 329 30 HOH HOH . J 4 HOH B 1 317 2 HOH HOH . J 4 HOH B 2 318 3 HOH HOH . J 4 HOH B 3 319 4 HOH HOH . J 4 HOH B 4 320 9 HOH HOH . J 4 HOH B 5 321 11 HOH HOH . J 4 HOH B 6 322 12 HOH HOH . J 4 HOH B 7 323 13 HOH HOH . J 4 HOH B 8 324 18 HOH HOH . J 4 HOH B 9 325 19 HOH HOH . J 4 HOH B 10 326 20 HOH HOH . J 4 HOH B 11 327 21 HOH HOH . J 4 HOH B 12 328 23 HOH HOH . J 4 HOH B 13 329 24 HOH HOH . J 4 HOH B 14 330 25 HOH HOH . J 4 HOH B 15 331 26 HOH HOH . J 4 HOH B 16 332 28 HOH HOH . J 4 HOH B 17 333 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 3 -54.05 21.318 -18.497 0.5 47.77 ? P PO4 316 B 1 HETATM 2 O O1 PO4 . . . H 3 -52.719 21.388 -19.217 0.5 47.21 ? O1 PO4 316 B 1 HETATM 3 O O2 PO4 . . . H 3 -54.831 20.103 -18.914 0.5 47.24 ? O2 PO4 316 B 1 HETATM 4 O O3 PO4 . . . H 3 -53.79 21.194 -17.018 0.5 47.22 ? O3 PO4 316 B 1 HETATM 5 O O4 PO4 . . . H 3 -54.902 22.537 -18.811 0.5 47.26 ? O4 PO4 316 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #