data_2O5E
#
_model_server_result.job_id            L44Xbo5nJf69hynaioCMeA 
_model_server_result.datetime_utc      '2024-10-20 00:32:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o5e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":9}' 
#
_entry.id    2O5E 
#
_exptl.entry_id    2O5E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.113 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            THYMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2O5E 
_cell.length_a            102.26 
_cell.length_b            102.26 
_cell.length_c            445.61 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O5E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F,G,H,J 1 1 
B,D,E,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H6 N2 O2' 
_chem_comp.formula_weight    126.113 
_chem_comp.id                TDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              THYMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 TDR sing 439 n n 
N1 C6 TDR sing 440 n n 
N1 HN1 TDR sing 441 n n 
C2 O2 TDR doub 442 n n 
C2 N3 TDR sing 443 n n 
N3 C4 TDR sing 444 n n 
N3 HN3 TDR sing 445 n n 
C4 O4 TDR doub 446 n n 
C4 C5 TDR sing 447 n n 
C5 CM5 TDR sing 448 n n 
C5 C6 TDR doub 449 n n 
CM5 H5M1 TDR sing 450 n n 
CM5 H5M2 TDR sing 451 n n 
CM5 H5M3 TDR sing 452 n n 
C6 H6 TDR sing 453 n n 
#
_atom_sites.entry_id                     2O5E 
_atom_sites.fract_transf_matrix[1][1]    0.009779 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009779 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 TDR D 1 9 1 TDR TDR . 
F 4 CL A 1 800 800 CL CL . 
G 4 CL A 1 801 801 CL CL . 
H 5 HOH C 1 22 22 HOH HOH . 
H 5 HOH C 2 72 72 HOH HOH . 
H 5 HOH C 3 114 114 HOH HOH . 
I 5 HOH D 1 40 40 HOH HOH . 
I 5 HOH D 2 68 68 HOH HOH . 
I 5 HOH D 3 111 111 HOH HOH . 
I 5 HOH D 4 128 128 HOH HOH . 
J 5 HOH A 1 802 3 HOH HOH . 
J 5 HOH A 2 803 4 HOH HOH . 
J 5 HOH A 3 804 6 HOH HOH . 
J 5 HOH A 4 805 7 HOH HOH . 
J 5 HOH A 5 806 8 HOH HOH . 
J 5 HOH A 6 807 9 HOH HOH . 
J 5 HOH A 7 808 10 HOH HOH . 
J 5 HOH A 8 809 13 HOH HOH . 
J 5 HOH A 9 810 16 HOH HOH . 
J 5 HOH A 10 811 19 HOH HOH . 
J 5 HOH A 11 812 20 HOH HOH . 
J 5 HOH A 12 813 21 HOH HOH . 
J 5 HOH A 13 814 23 HOH HOH . 
J 5 HOH A 14 815 24 HOH HOH . 
J 5 HOH A 15 816 26 HOH HOH . 
J 5 HOH A 16 817 27 HOH HOH . 
J 5 HOH A 17 818 28 HOH HOH . 
J 5 HOH A 18 819 29 HOH HOH . 
J 5 HOH A 19 820 30 HOH HOH . 
J 5 HOH A 20 821 31 HOH HOH . 
J 5 HOH A 21 822 32 HOH HOH . 
J 5 HOH A 22 823 36 HOH HOH . 
J 5 HOH A 23 824 37 HOH HOH . 
J 5 HOH A 24 825 43 HOH HOH . 
J 5 HOH A 25 826 44 HOH HOH . 
J 5 HOH A 26 827 45 HOH HOH . 
J 5 HOH A 27 828 46 HOH HOH . 
J 5 HOH A 28 829 49 HOH HOH . 
J 5 HOH A 29 830 50 HOH HOH . 
J 5 HOH A 30 831 52 HOH HOH . 
J 5 HOH A 31 832 53 HOH HOH . 
J 5 HOH A 32 833 57 HOH HOH . 
J 5 HOH A 33 834 58 HOH HOH . 
J 5 HOH A 34 835 59 HOH HOH . 
J 5 HOH A 35 836 63 HOH HOH . 
J 5 HOH A 36 837 67 HOH HOH . 
J 5 HOH A 37 838 71 HOH HOH . 
J 5 HOH A 38 839 75 HOH HOH . 
J 5 HOH A 39 840 77 HOH HOH . 
J 5 HOH A 40 841 78 HOH HOH . 
J 5 HOH A 41 842 81 HOH HOH . 
J 5 HOH A 42 843 82 HOH HOH . 
J 5 HOH A 43 844 83 HOH HOH . 
J 5 HOH A 44 845 87 HOH HOH . 
J 5 HOH A 45 846 88 HOH HOH . 
J 5 HOH A 46 847 89 HOH HOH . 
J 5 HOH A 47 848 90 HOH HOH . 
J 5 HOH A 48 849 91 HOH HOH . 
J 5 HOH A 49 850 93 HOH HOH . 
J 5 HOH A 50 851 95 HOH HOH . 
J 5 HOH A 51 852 96 HOH HOH . 
J 5 HOH A 52 853 101 HOH HOH . 
J 5 HOH A 53 854 102 HOH HOH . 
J 5 HOH A 54 855 103 HOH HOH . 
J 5 HOH A 55 856 104 HOH HOH . 
J 5 HOH A 56 857 106 HOH HOH . 
J 5 HOH A 57 858 107 HOH HOH . 
J 5 HOH A 58 859 108 HOH HOH . 
J 5 HOH A 59 860 109 HOH HOH . 
J 5 HOH A 60 861 112 HOH HOH . 
J 5 HOH A 61 862 115 HOH HOH . 
J 5 HOH A 62 863 116 HOH HOH . 
J 5 HOH A 63 864 118 HOH HOH . 
J 5 HOH A 64 865 119 HOH HOH . 
J 5 HOH A 65 866 120 HOH HOH . 
J 5 HOH A 66 867 122 HOH HOH . 
J 5 HOH A 67 868 123 HOH HOH . 
J 5 HOH A 68 869 126 HOH HOH . 
J 5 HOH A 69 870 129 HOH HOH . 
J 5 HOH A 70 871 131 HOH HOH . 
J 5 HOH A 71 872 132 HOH HOH . 
J 5 HOH A 72 873 134 HOH HOH . 
J 5 HOH A 73 874 135 HOH HOH . 
J 5 HOH A 74 875 140 HOH HOH . 
J 5 HOH A 75 876 141 HOH HOH . 
J 5 HOH A 76 877 143 HOH HOH . 
J 5 HOH A 77 878 145 HOH HOH . 
J 5 HOH A 78 879 146 HOH HOH . 
J 5 HOH A 79 880 151 HOH HOH . 
J 5 HOH A 80 881 152 HOH HOH . 
J 5 HOH A 81 882 162 HOH HOH . 
J 5 HOH A 82 883 163 HOH HOH . 
J 5 HOH A 83 884 168 HOH HOH . 
J 5 HOH A 84 885 171 HOH HOH . 
J 5 HOH A 85 886 172 HOH HOH . 
K 5 HOH B 1 660 2 HOH HOH . 
K 5 HOH B 2 661 5 HOH HOH . 
K 5 HOH B 3 662 11 HOH HOH . 
K 5 HOH B 4 663 12 HOH HOH . 
K 5 HOH B 5 664 15 HOH HOH . 
K 5 HOH B 6 665 17 HOH HOH . 
K 5 HOH B 7 666 18 HOH HOH . 
K 5 HOH B 8 667 25 HOH HOH . 
K 5 HOH B 9 668 33 HOH HOH . 
K 5 HOH B 10 669 34 HOH HOH . 
K 5 HOH B 11 670 35 HOH HOH . 
K 5 HOH B 12 671 38 HOH HOH . 
K 5 HOH B 13 672 39 HOH HOH . 
K 5 HOH B 14 673 41 HOH HOH . 
K 5 HOH B 15 674 42 HOH HOH . 
K 5 HOH B 16 675 47 HOH HOH . 
K 5 HOH B 17 676 51 HOH HOH . 
K 5 HOH B 18 677 54 HOH HOH . 
K 5 HOH B 19 678 55 HOH HOH . 
K 5 HOH B 20 679 56 HOH HOH . 
K 5 HOH B 21 680 60 HOH HOH . 
K 5 HOH B 22 681 61 HOH HOH . 
K 5 HOH B 23 682 62 HOH HOH . 
K 5 HOH B 24 683 64 HOH HOH . 
K 5 HOH B 25 684 65 HOH HOH . 
K 5 HOH B 26 685 66 HOH HOH . 
K 5 HOH B 27 686 69 HOH HOH . 
K 5 HOH B 28 687 73 HOH HOH . 
K 5 HOH B 29 688 74 HOH HOH . 
K 5 HOH B 30 689 76 HOH HOH . 
K 5 HOH B 31 690 79 HOH HOH . 
K 5 HOH B 32 691 80 HOH HOH . 
K 5 HOH B 33 692 84 HOH HOH . 
K 5 HOH B 34 693 85 HOH HOH . 
K 5 HOH B 35 694 86 HOH HOH . 
K 5 HOH B 36 695 92 HOH HOH . 
K 5 HOH B 37 696 94 HOH HOH . 
K 5 HOH B 38 697 97 HOH HOH . 
K 5 HOH B 39 698 99 HOH HOH . 
K 5 HOH B 40 699 100 HOH HOH . 
K 5 HOH B 41 700 105 HOH HOH . 
K 5 HOH B 42 701 110 HOH HOH . 
K 5 HOH B 43 702 113 HOH HOH . 
K 5 HOH B 44 703 117 HOH HOH . 
K 5 HOH B 45 704 124 HOH HOH . 
K 5 HOH B 46 705 125 HOH HOH . 
K 5 HOH B 47 706 127 HOH HOH . 
K 5 HOH B 48 707 130 HOH HOH . 
K 5 HOH B 49 708 136 HOH HOH . 
K 5 HOH B 50 709 137 HOH HOH . 
K 5 HOH B 51 710 138 HOH HOH . 
K 5 HOH B 52 711 139 HOH HOH . 
K 5 HOH B 53 712 166 HOH HOH . 
K 5 HOH B 54 713 170 HOH HOH . 
K 5 HOH B 55 714 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 TDR . . . E 3 36.533 77.952 195.463 1 108.43 ? N1 TDR 9 D 1 
HETATM 2 C C2 TDR . . . E 3 35.972 77.644 194.275 1 108.09 ? C2 TDR 9 D 1 
HETATM 3 O O2 TDR . . . E 3 36.29 78.297 193.255 1 107.78 ? O2 TDR 9 D 1 
HETATM 4 N N3 TDR . . . E 3 35.076 76.647 194.164 1 107.9 ? N3 TDR 9 D 1 
HETATM 5 C C4 TDR . . . E 3 34.708 75.922 195.23 1 108.01 ? C4 TDR 9 D 1 
HETATM 6 O O4 TDR . . . E 3 33.867 75.005 195.089 1 107.67 ? O4 TDR 9 D 1 
HETATM 7 C C5 TDR . . . E 3 35.316 76.247 196.555 1 108.22 ? C5 TDR 9 D 1 
HETATM 8 C CM5 TDR . . . E 3 34.968 75.497 197.817 1 108.07 ? CM5 TDR 9 D 1 
HETATM 9 C C6 TDR . . . E 3 36.234 77.29 196.597 1 108.55 ? C6 TDR 9 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#