data_2O5L # _model_server_result.job_id jdN_g1WqsklFITUyZsEk9Q _model_server_result.datetime_utc '2024-11-23 07:09:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 2O5L # _exptl.entry_id 2O5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 615.58 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING MN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.74 _cell.angle_gamma 90 _cell.entry_id 2O5L _cell.length_a 35.415 _cell.length_b 28.586 _cell.length_c 63.197 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 X HIS 93 1_555 D MN MNR . X MNR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 D MN MNR . X MNR 154 1_555 E O MOH . X MOH 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'C34 H32 Mn N4 O4 5' _chem_comp.formula_weight 615.58 _chem_comp.id MNR _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING MN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A MNR sing 224 n y CHA C4D MNR doub 225 n y CHA HHA MNR sing 226 n n CHB C4A MNR doub 227 n y CHB C1B MNR sing 228 n y CHB HHB MNR sing 229 n n CHC C4B MNR sing 230 n y CHC C1C MNR doub 231 n y CHC HHC MNR sing 232 n n CHD C4C MNR sing 233 n y CHD C1D MNR doub 234 n y CHD HHD MNR sing 235 n n C1A C2A MNR sing 236 n n C1A NA MNR doub 237 n y C2A C3A MNR doub 238 n n C2A CAA MNR sing 239 n n C3A C4A MNR sing 240 n n C3A CMA MNR sing 241 n n C4A NA MNR sing 242 n y CMA HMA1 MNR sing 243 n n CMA HMA2 MNR sing 244 n n CMA HMA3 MNR sing 245 n n CAA CBA MNR sing 246 n n CAA HAA1 MNR sing 247 n n CAA HAA2 MNR sing 248 n n CBA CGA MNR sing 249 n n CBA HBA1 MNR sing 250 n n CBA HBA2 MNR sing 251 n n CGA O1A MNR doub 252 n n CGA O2A MNR sing 253 n n O2A H2A MNR sing 254 n n C1B C2B MNR doub 255 n y C1B NB MNR sing 256 n y C2B C3B MNR sing 257 n y C2B CMB MNR sing 258 n n C3B C4B MNR doub 259 n y C3B CAB MNR sing 260 n n C4B NB MNR sing 261 n y CMB HMB1 MNR sing 262 n n CMB HMB2 MNR sing 263 n n CMB HMB3 MNR sing 264 n n CAB CBB MNR doub 265 n n CAB HAB MNR sing 266 n n CBB HBB1 MNR sing 267 n n CBB HBB2 MNR sing 268 n n C1C C2C MNR sing 269 n n C1C NC MNR sing 270 n y C2C C3C MNR doub 271 n n C2C CMC MNR sing 272 n n C3C C4C MNR sing 273 n n C3C CAC MNR sing 274 n n C4C NC MNR doub 275 n y CMC HMC1 MNR sing 276 n n CMC HMC2 MNR sing 277 n n CMC HMC3 MNR sing 278 n n CAC CBC MNR doub 279 n n CAC HAC MNR sing 280 n n CBC HBC1 MNR sing 281 n n CBC HBC2 MNR sing 282 n n C1D C2D MNR sing 283 n y C1D ND MNR sing 284 n y C2D C3D MNR doub 285 n y C2D CMD MNR sing 286 n n C3D C4D MNR sing 287 n y C3D CAD MNR sing 288 n n C4D ND MNR sing 289 n y CMD HMD1 MNR sing 290 n n CMD HMD2 MNR sing 291 n n CMD HMD3 MNR sing 292 n n CAD CBD MNR sing 293 n n CAD HAD1 MNR sing 294 n n CAD HAD2 MNR sing 295 n n CBD CGD MNR sing 296 n n CBD HBD1 MNR sing 297 n n CBD HBD2 MNR sing 298 n n CGD O1D MNR sing 299 n n CGD O2D MNR doub 300 n n O1D H1D MNR sing 301 n n MN NA MNR sing 302 n n MN NB MNR sing 303 n n MN NC MNR sing 304 n n MN ND MNR sing 305 n n # _atom_sites.entry_id 2O5L _atom_sites.fract_transf_matrix[1][1] 0.028237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007958 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 157 157 SO4 SO4 . C 2 SO4 X 1 158 158 SO4 SO4 . D 3 MNR X 1 154 154 MNR MNR . E 4 MOH X 1 160 160 MOH MOH . F 5 HOH X 1 161 2 HOH HOH . F 5 HOH X 2 162 3 HOH HOH . F 5 HOH X 3 163 4 HOH HOH . F 5 HOH X 4 164 5 HOH HOH . F 5 HOH X 5 165 6 HOH HOH . F 5 HOH X 6 166 7 HOH HOH . F 5 HOH X 7 167 8 HOH HOH . F 5 HOH X 8 168 9 HOH HOH . F 5 HOH X 9 169 10 HOH HOH . F 5 HOH X 10 170 11 HOH HOH . F 5 HOH X 11 171 12 HOH HOH . F 5 HOH X 12 172 14 HOH HOH . F 5 HOH X 13 173 15 HOH HOH . F 5 HOH X 14 174 16 HOH HOH . F 5 HOH X 15 175 17 HOH HOH . F 5 HOH X 16 176 18 HOH HOH . F 5 HOH X 17 177 19 HOH HOH . F 5 HOH X 18 178 20 HOH HOH . F 5 HOH X 19 179 21 HOH HOH . F 5 HOH X 20 180 22 HOH HOH . F 5 HOH X 21 181 23 HOH HOH . F 5 HOH X 22 182 24 HOH HOH . F 5 HOH X 23 183 25 HOH HOH . F 5 HOH X 24 184 26 HOH HOH . F 5 HOH X 25 185 27 HOH HOH . F 5 HOH X 26 186 28 HOH HOH . F 5 HOH X 27 187 29 HOH HOH . F 5 HOH X 28 188 30 HOH HOH . F 5 HOH X 29 189 31 HOH HOH . F 5 HOH X 30 190 32 HOH HOH . F 5 HOH X 31 191 33 HOH HOH . F 5 HOH X 32 192 34 HOH HOH . F 5 HOH X 33 193 35 HOH HOH . F 5 HOH X 34 194 36 HOH HOH . F 5 HOH X 35 195 37 HOH HOH . F 5 HOH X 36 196 38 HOH HOH . F 5 HOH X 37 197 39 HOH HOH . F 5 HOH X 38 198 42 HOH HOH . F 5 HOH X 39 199 43 HOH HOH . F 5 HOH X 40 200 44 HOH HOH . F 5 HOH X 41 201 45 HOH HOH . F 5 HOH X 42 202 46 HOH HOH . F 5 HOH X 43 203 47 HOH HOH . F 5 HOH X 44 204 48 HOH HOH . F 5 HOH X 45 205 49 HOH HOH . F 5 HOH X 46 206 50 HOH HOH . F 5 HOH X 47 207 51 HOH HOH . F 5 HOH X 48 208 52 HOH HOH . F 5 HOH X 49 209 53 HOH HOH . F 5 HOH X 50 210 54 HOH HOH . F 5 HOH X 51 211 55 HOH HOH . F 5 HOH X 52 212 56 HOH HOH . F 5 HOH X 53 213 57 HOH HOH . F 5 HOH X 54 214 58 HOH HOH . F 5 HOH X 55 215 59 HOH HOH . F 5 HOH X 56 216 60 HOH HOH . F 5 HOH X 57 217 61 HOH HOH . F 5 HOH X 58 218 62 HOH HOH . F 5 HOH X 59 219 63 HOH HOH . F 5 HOH X 60 220 64 HOH HOH . F 5 HOH X 61 221 65 HOH HOH . F 5 HOH X 62 222 66 HOH HOH . F 5 HOH X 63 223 67 HOH HOH . F 5 HOH X 64 224 68 HOH HOH . F 5 HOH X 65 225 69 HOH HOH . F 5 HOH X 66 226 70 HOH HOH . F 5 HOH X 67 227 71 HOH HOH . F 5 HOH X 68 228 72 HOH HOH . F 5 HOH X 69 229 73 HOH HOH . F 5 HOH X 70 230 74 HOH HOH . F 5 HOH X 71 231 75 HOH HOH . F 5 HOH X 72 232 76 HOH HOH . F 5 HOH X 73 233 78 HOH HOH . F 5 HOH X 74 234 79 HOH HOH . F 5 HOH X 75 235 80 HOH HOH . F 5 HOH X 76 236 81 HOH HOH . F 5 HOH X 77 237 83 HOH HOH . F 5 HOH X 78 238 84 HOH HOH . F 5 HOH X 79 239 85 HOH HOH . F 5 HOH X 80 240 86 HOH HOH . F 5 HOH X 81 241 87 HOH HOH . F 5 HOH X 82 242 88 HOH HOH . F 5 HOH X 83 243 89 HOH HOH . F 5 HOH X 84 244 90 HOH HOH . F 5 HOH X 85 245 91 HOH HOH . F 5 HOH X 86 246 92 HOH HOH . F 5 HOH X 87 247 93 HOH HOH . F 5 HOH X 88 248 94 HOH HOH . F 5 HOH X 89 249 95 HOH HOH . F 5 HOH X 90 250 96 HOH HOH . F 5 HOH X 91 251 97 HOH HOH . F 5 HOH X 92 252 98 HOH HOH . F 5 HOH X 93 253 99 HOH HOH . F 5 HOH X 94 254 100 HOH HOH . F 5 HOH X 95 255 101 HOH HOH . F 5 HOH X 96 256 102 HOH HOH . F 5 HOH X 97 257 103 HOH HOH . F 5 HOH X 98 258 104 HOH HOH . F 5 HOH X 99 259 105 HOH HOH . F 5 HOH X 100 260 106 HOH HOH . F 5 HOH X 101 261 107 HOH HOH . F 5 HOH X 102 262 108 HOH HOH . F 5 HOH X 103 263 109 HOH HOH . F 5 HOH X 104 264 110 HOH HOH . F 5 HOH X 105 265 111 HOH HOH . F 5 HOH X 106 266 112 HOH HOH . F 5 HOH X 107 267 113 HOH HOH . F 5 HOH X 108 268 114 HOH HOH . F 5 HOH X 109 269 115 HOH HOH . F 5 HOH X 110 270 116 HOH HOH . F 5 HOH X 111 271 117 HOH HOH . F 5 HOH X 112 272 120 HOH HOH . F 5 HOH X 113 273 121 HOH HOH . F 5 HOH X 114 274 122 HOH HOH . F 5 HOH X 115 275 123 HOH HOH . F 5 HOH X 116 276 124 HOH HOH . F 5 HOH X 117 277 125 HOH HOH . F 5 HOH X 118 278 126 HOH HOH . F 5 HOH X 119 279 127 HOH HOH . F 5 HOH X 120 280 128 HOH HOH . F 5 HOH X 121 281 129 HOH HOH . F 5 HOH X 122 282 130 HOH HOH . F 5 HOH X 123 283 131 HOH HOH . F 5 HOH X 124 284 132 HOH HOH . F 5 HOH X 125 285 133 HOH HOH . F 5 HOH X 126 286 134 HOH HOH . F 5 HOH X 127 287 135 HOH HOH . F 5 HOH X 128 288 136 HOH HOH . F 5 HOH X 129 289 137 HOH HOH . F 5 HOH X 130 290 138 HOH HOH . F 5 HOH X 131 291 139 HOH HOH . F 5 HOH X 132 292 140 HOH HOH . F 5 HOH X 133 293 141 HOH HOH . F 5 HOH X 134 294 142 HOH HOH . F 5 HOH X 135 295 143 HOH HOH . F 5 HOH X 136 296 144 HOH HOH . F 5 HOH X 137 297 145 HOH HOH . F 5 HOH X 138 298 146 HOH HOH . F 5 HOH X 139 299 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA MNR . . . D 3 -0.544 9.619 16.237 1 11.01 ? CHA MNR 154 X 1 HETATM 2 C CHB MNR . . . D 3 -4.202 6.341 15.351 1 10.09 ? CHB MNR 154 X 1 HETATM 3 C CHC MNR . . . D 3 -0.812 3.097 13.813 1 12.08 ? CHC MNR 154 X 1 HETATM 4 C CHD MNR . . . D 3 2.692 6.196 14.869 1 12.24 ? CHD MNR 154 X 1 HETATM 5 C C1A MNR . . . D 3 -1.858 8.953 16.138 1 11.61 ? C1A MNR 154 X 1 HETATM 6 C C2A MNR . . . D 3 -3.02 9.701 16.423 1 10.09 ? C2A MNR 154 X 1 HETATM 7 C C3A MNR . . . D 3 -4.096 8.739 16.197 1 10.24 ? C3A MNR 154 X 1 HETATM 8 C C4A MNR . . . D 3 -3.39 7.499 15.751 1 9.37 ? C4A MNR 154 X 1 HETATM 9 C CMA MNR . . . D 3 -5.594 8.948 16.3 1 8.8 ? CMA MNR 154 X 1 HETATM 10 C CAA MNR . . . D 3 -3.155 11.162 16.812 1 13.16 ? CAA MNR 154 X 1 HETATM 11 C CBA MNR . . . D 3 -3.74 11.993 15.66 1 13.18 ? CBA MNR 154 X 1 HETATM 12 C CGA MNR . . . D 3 -2.82 11.968 14.439 1 17.25 ? CGA MNR 154 X 1 HETATM 13 O O1A MNR . . . D 3 -1.613 12.281 14.601 1 17.59 ? O1A MNR 154 X 1 HETATM 14 O O2A MNR . . . D 3 -3.276 11.613 13.315 1 17.45 ? O2A MNR 154 X 1 HETATM 15 C C1B MNR . . . D 3 -3.556 5.112 14.824 1 11.14 ? C1B MNR 154 X 1 HETATM 16 C C2B MNR . . . D 3 -4.36 4.025 14.486 1 11.31 ? C2B MNR 154 X 1 HETATM 17 C C3B MNR . . . D 3 -3.334 3.084 14.008 1 10.69 ? C3B MNR 154 X 1 HETATM 18 C C4B MNR . . . D 3 -1.963 3.699 14.136 1 13.11 ? C4B MNR 154 X 1 HETATM 19 C CMB MNR . . . D 3 -5.858 3.83 14.527 1 10.53 ? CMB MNR 154 X 1 HETATM 20 C CAB MNR . . . D 3 -3.666 1.705 13.527 1 11.88 ? CAB MNR 154 X 1 HETATM 21 C CBB MNR . . . D 3 -4.563 0.98 14.196 1 14.75 ? CBB MNR 154 X 1 HETATM 22 C C1C MNR . . . D 3 0.316 3.685 14.026 1 11.02 ? C1C MNR 154 X 1 HETATM 23 C C2C MNR . . . D 3 1.575 2.89 13.795 1 11.04 ? C2C MNR 154 X 1 HETATM 24 C C3C MNR . . . D 3 2.7 3.906 13.987 1 14.33 ? C3C MNR 154 X 1 HETATM 25 C C4C MNR . . . D 3 1.965 5.132 14.503 1 11.52 ? C4C MNR 154 X 1 HETATM 26 C CMC MNR . . . D 3 1.629 1.433 13.356 1 12.4 ? CMC MNR 154 X 1 HETATM 27 C CAC MNR . . . D 3 4.144 3.595 14.405 1 13.1 ? CAC MNR 154 X 1 HETATM 28 C CBC MNR . . . D 3 4.698 2.455 14.053 1 15.29 ? CBC MNR 154 X 1 HETATM 29 C C1D MNR . . . D 3 2.084 7.463 15.302 1 13.55 ? C1D MNR 154 X 1 HETATM 30 C C2D MNR . . . D 3 2.983 8.609 15.624 1 15.61 ? C2D MNR 154 X 1 HETATM 31 C C3D MNR . . . D 3 2.019 9.566 16.144 1 15.02 ? C3D MNR 154 X 1 HETATM 32 C C4D MNR . . . D 3 0.708 8.896 15.916 1 12.76 ? C4D MNR 154 X 1 HETATM 33 C CMD MNR . . . D 3 4.465 8.607 15.872 1 15.57 ? CMD MNR 154 X 1 HETATM 34 C CAD MNR . . . D 3 2.313 10.878 16.845 1 14.8 ? CAD MNR 154 X 1 HETATM 35 C CBD MNR . . . D 3 2.436 10.488 18.302 1 20.18 ? CBD MNR 154 X 1 HETATM 36 C CGD MNR . . . D 3 2.569 11.709 19.179 1 25.62 ? CGD MNR 154 X 1 HETATM 37 O O1D MNR . . . D 3 1.538 12.182 19.716 1 29.29 ? O1D MNR 154 X 1 HETATM 38 O O2D MNR . . . D 3 3.719 12.177 19.357 1 28.27 ? O2D MNR 154 X 1 HETATM 39 MN MN MNR . . . D 3 -0.715 6.295 15.001 1 13.83 ? MN MNR 154 X 1 HETATM 40 N NA MNR . . . D 3 -2.054 7.671 15.778 1 11.67 ? NA MNR 154 X 1 HETATM 41 N NB MNR . . . D 3 -2.226 4.923 14.639 1 12.71 ? NB MNR 154 X 1 HETATM 42 N NC MNR . . . D 3 0.645 4.915 14.44 1 12.07 ? NC MNR 154 X 1 HETATM 43 N ND MNR . . . D 3 0.747 7.653 15.426 1 11.71 ? ND MNR 154 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #