data_2O5M # _model_server_result.job_id ZKXzwd9feGXZEnI4KpN_SA _model_server_result.datetime_utc '2024-11-08 04:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":154}' # _entry.id 2O5M # _exptl.entry_id 2O5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 615.58 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING MN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.9 _cell.angle_gamma 90 _cell.entry_id 2O5M _cell.length_a 35.483 _cell.length_b 28.753 _cell.length_c 62.91 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 X HIS 93 1_555 E MN MNR . X MNR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 E MN MNR . X MNR 154 1_555 B N1 AZI . X AZI 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'C34 H32 Mn N4 O4 5' _chem_comp.formula_weight 615.58 _chem_comp.id MNR _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING MN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A MNR sing 226 n y CHA C4D MNR doub 227 n y CHA HHA MNR sing 228 n n CHB C4A MNR doub 229 n y CHB C1B MNR sing 230 n y CHB HHB MNR sing 231 n n CHC C4B MNR sing 232 n y CHC C1C MNR doub 233 n y CHC HHC MNR sing 234 n n CHD C4C MNR sing 235 n y CHD C1D MNR doub 236 n y CHD HHD MNR sing 237 n n C1A C2A MNR sing 238 n n C1A NA MNR doub 239 n y C2A C3A MNR doub 240 n n C2A CAA MNR sing 241 n n C3A C4A MNR sing 242 n n C3A CMA MNR sing 243 n n C4A NA MNR sing 244 n y CMA HMA1 MNR sing 245 n n CMA HMA2 MNR sing 246 n n CMA HMA3 MNR sing 247 n n CAA CBA MNR sing 248 n n CAA HAA1 MNR sing 249 n n CAA HAA2 MNR sing 250 n n CBA CGA MNR sing 251 n n CBA HBA1 MNR sing 252 n n CBA HBA2 MNR sing 253 n n CGA O1A MNR doub 254 n n CGA O2A MNR sing 255 n n O2A H2A MNR sing 256 n n C1B C2B MNR doub 257 n y C1B NB MNR sing 258 n y C2B C3B MNR sing 259 n y C2B CMB MNR sing 260 n n C3B C4B MNR doub 261 n y C3B CAB MNR sing 262 n n C4B NB MNR sing 263 n y CMB HMB1 MNR sing 264 n n CMB HMB2 MNR sing 265 n n CMB HMB3 MNR sing 266 n n CAB CBB MNR doub 267 n n CAB HAB MNR sing 268 n n CBB HBB1 MNR sing 269 n n CBB HBB2 MNR sing 270 n n C1C C2C MNR sing 271 n n C1C NC MNR sing 272 n y C2C C3C MNR doub 273 n n C2C CMC MNR sing 274 n n C3C C4C MNR sing 275 n n C3C CAC MNR sing 276 n n C4C NC MNR doub 277 n y CMC HMC1 MNR sing 278 n n CMC HMC2 MNR sing 279 n n CMC HMC3 MNR sing 280 n n CAC CBC MNR doub 281 n n CAC HAC MNR sing 282 n n CBC HBC1 MNR sing 283 n n CBC HBC2 MNR sing 284 n n C1D C2D MNR sing 285 n y C1D ND MNR sing 286 n y C2D C3D MNR doub 287 n y C2D CMD MNR sing 288 n n C3D C4D MNR sing 289 n y C3D CAD MNR sing 290 n n C4D ND MNR sing 291 n y CMD HMD1 MNR sing 292 n n CMD HMD2 MNR sing 293 n n CMD HMD3 MNR sing 294 n n CAD CBD MNR sing 295 n n CAD HAD1 MNR sing 296 n n CAD HAD2 MNR sing 297 n n CBD CGD MNR sing 298 n n CBD HBD1 MNR sing 299 n n CBD HBD2 MNR sing 300 n n CGD O1D MNR sing 301 n n CGD O2D MNR doub 302 n n O1D H1D MNR sing 303 n n MN NA MNR sing 304 n n MN NB MNR sing 305 n n MN NC MNR sing 306 n n MN ND MNR sing 307 n n # _atom_sites.entry_id 2O5M _atom_sites.fract_transf_matrix[1][1] 0.028183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZI X 1 155 155 AZI AZI . C 3 SO4 X 1 157 157 SO4 SO4 . D 3 SO4 X 1 158 158 SO4 SO4 . E 4 MNR X 1 154 154 MNR MNR . F 5 HOH X 1 159 159 HOH HOH . F 5 HOH X 2 160 160 HOH HOH . F 5 HOH X 3 161 161 HOH HOH . F 5 HOH X 4 162 162 HOH HOH . F 5 HOH X 5 163 163 HOH HOH . F 5 HOH X 6 164 164 HOH HOH . F 5 HOH X 7 165 165 HOH HOH . F 5 HOH X 8 166 166 HOH HOH . F 5 HOH X 9 167 167 HOH HOH . F 5 HOH X 10 168 168 HOH HOH . F 5 HOH X 11 169 169 HOH HOH . F 5 HOH X 12 170 170 HOH HOH . F 5 HOH X 13 171 171 HOH HOH . F 5 HOH X 14 172 172 HOH HOH . F 5 HOH X 15 173 173 HOH HOH . F 5 HOH X 16 174 174 HOH HOH . F 5 HOH X 17 175 175 HOH HOH . F 5 HOH X 18 176 176 HOH HOH . F 5 HOH X 19 177 177 HOH HOH . F 5 HOH X 20 178 178 HOH HOH . F 5 HOH X 21 179 179 HOH HOH . F 5 HOH X 22 181 181 HOH HOH . F 5 HOH X 23 182 182 HOH HOH . F 5 HOH X 24 183 183 HOH HOH . F 5 HOH X 25 184 184 HOH HOH . F 5 HOH X 26 185 185 HOH HOH . F 5 HOH X 27 186 186 HOH HOH . F 5 HOH X 28 187 187 HOH HOH . F 5 HOH X 29 188 188 HOH HOH . F 5 HOH X 30 189 189 HOH HOH . F 5 HOH X 31 190 190 HOH HOH . F 5 HOH X 32 191 191 HOH HOH . F 5 HOH X 33 192 192 HOH HOH . F 5 HOH X 34 193 193 HOH HOH . F 5 HOH X 35 194 194 HOH HOH . F 5 HOH X 36 195 195 HOH HOH . F 5 HOH X 37 196 196 HOH HOH . F 5 HOH X 38 197 197 HOH HOH . F 5 HOH X 39 198 198 HOH HOH . F 5 HOH X 40 199 199 HOH HOH . F 5 HOH X 41 200 200 HOH HOH . F 5 HOH X 42 201 201 HOH HOH . F 5 HOH X 43 202 202 HOH HOH . F 5 HOH X 44 203 203 HOH HOH . F 5 HOH X 45 204 204 HOH HOH . F 5 HOH X 46 205 205 HOH HOH . F 5 HOH X 47 206 206 HOH HOH . F 5 HOH X 48 207 207 HOH HOH . F 5 HOH X 49 208 208 HOH HOH . F 5 HOH X 50 209 209 HOH HOH . F 5 HOH X 51 210 210 HOH HOH . F 5 HOH X 52 211 211 HOH HOH . F 5 HOH X 53 212 212 HOH HOH . F 5 HOH X 54 213 213 HOH HOH . F 5 HOH X 55 214 214 HOH HOH . F 5 HOH X 56 215 215 HOH HOH . F 5 HOH X 57 216 216 HOH HOH . F 5 HOH X 58 217 217 HOH HOH . F 5 HOH X 59 218 218 HOH HOH . F 5 HOH X 60 219 219 HOH HOH . F 5 HOH X 61 220 220 HOH HOH . F 5 HOH X 62 221 221 HOH HOH . F 5 HOH X 63 222 222 HOH HOH . F 5 HOH X 64 223 223 HOH HOH . F 5 HOH X 65 224 224 HOH HOH . F 5 HOH X 66 225 225 HOH HOH . F 5 HOH X 67 226 226 HOH HOH . F 5 HOH X 68 227 227 HOH HOH . F 5 HOH X 69 228 228 HOH HOH . F 5 HOH X 70 229 229 HOH HOH . F 5 HOH X 71 230 230 HOH HOH . F 5 HOH X 72 231 231 HOH HOH . F 5 HOH X 73 232 232 HOH HOH . F 5 HOH X 74 233 233 HOH HOH . F 5 HOH X 75 234 234 HOH HOH . F 5 HOH X 76 235 235 HOH HOH . F 5 HOH X 77 236 236 HOH HOH . F 5 HOH X 78 237 237 HOH HOH . F 5 HOH X 79 238 238 HOH HOH . F 5 HOH X 80 239 239 HOH HOH . F 5 HOH X 81 240 240 HOH HOH . F 5 HOH X 82 241 241 HOH HOH . F 5 HOH X 83 242 242 HOH HOH . F 5 HOH X 84 243 243 HOH HOH . F 5 HOH X 85 244 244 HOH HOH . F 5 HOH X 86 245 245 HOH HOH . F 5 HOH X 87 246 246 HOH HOH . F 5 HOH X 88 247 247 HOH HOH . F 5 HOH X 89 248 248 HOH HOH . F 5 HOH X 90 249 249 HOH HOH . F 5 HOH X 91 250 250 HOH HOH . F 5 HOH X 92 251 251 HOH HOH . F 5 HOH X 93 252 252 HOH HOH . F 5 HOH X 94 253 253 HOH HOH . F 5 HOH X 95 254 254 HOH HOH . F 5 HOH X 96 255 255 HOH HOH . F 5 HOH X 97 256 256 HOH HOH . F 5 HOH X 98 257 257 HOH HOH . F 5 HOH X 99 258 258 HOH HOH . F 5 HOH X 100 259 259 HOH HOH . F 5 HOH X 101 260 260 HOH HOH . F 5 HOH X 102 261 261 HOH HOH . F 5 HOH X 103 262 262 HOH HOH . F 5 HOH X 104 263 263 HOH HOH . F 5 HOH X 105 264 264 HOH HOH . F 5 HOH X 106 265 265 HOH HOH . F 5 HOH X 107 266 266 HOH HOH . F 5 HOH X 108 267 267 HOH HOH . F 5 HOH X 109 268 268 HOH HOH . F 5 HOH X 110 269 269 HOH HOH . F 5 HOH X 111 270 270 HOH HOH . F 5 HOH X 112 271 271 HOH HOH . F 5 HOH X 113 272 272 HOH HOH . F 5 HOH X 114 273 273 HOH HOH . F 5 HOH X 115 274 274 HOH HOH . F 5 HOH X 116 275 275 HOH HOH . F 5 HOH X 117 276 276 HOH HOH . F 5 HOH X 118 277 277 HOH HOH . F 5 HOH X 119 278 278 HOH HOH . F 5 HOH X 120 279 279 HOH HOH . F 5 HOH X 121 280 280 HOH HOH . F 5 HOH X 122 281 281 HOH HOH . F 5 HOH X 123 282 282 HOH HOH . F 5 HOH X 124 283 283 HOH HOH . F 5 HOH X 125 284 284 HOH HOH . F 5 HOH X 126 285 285 HOH HOH . F 5 HOH X 127 286 286 HOH HOH . F 5 HOH X 128 287 287 HOH HOH . F 5 HOH X 129 288 288 HOH HOH . F 5 HOH X 130 289 289 HOH HOH . F 5 HOH X 131 290 290 HOH HOH . F 5 HOH X 132 291 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA MNR . . . E 4 -0.62 9.623 16.277 1 9.83 ? CHA MNR 154 X 1 HETATM 2 C CHB MNR . . . E 4 -4.166 6.399 15.254 1 9.64 ? CHB MNR 154 X 1 HETATM 3 C CHC MNR . . . E 4 -0.752 3.206 14.051 1 9.73 ? CHC MNR 154 X 1 HETATM 4 C CHD MNR . . . E 4 2.663 6.276 14.963 1 12.6 ? CHD MNR 154 X 1 HETATM 5 C C1A MNR . . . E 4 -1.92 9.005 16.174 1 10.53 ? C1A MNR 154 X 1 HETATM 6 C C2A MNR . . . E 4 -3.086 9.748 16.469 1 8.44 ? C2A MNR 154 X 1 HETATM 7 C C3A MNR . . . E 4 -4.149 8.783 16.239 1 8.66 ? C3A MNR 154 X 1 HETATM 8 C C4A MNR . . . E 4 -3.459 7.571 15.755 1 8.96 ? C4A MNR 154 X 1 HETATM 9 C CMA MNR . . . E 4 -5.629 8.985 16.263 1 8.17 ? CMA MNR 154 X 1 HETATM 10 C CAA MNR . . . E 4 -3.22 11.221 16.823 1 9.43 ? CAA MNR 154 X 1 HETATM 11 C CBA MNR . . . E 4 -3.786 12.041 15.651 1 12.14 ? CBA MNR 154 X 1 HETATM 12 C CGA MNR . . . E 4 -2.84 12.06 14.452 1 15.1 ? CGA MNR 154 X 1 HETATM 13 O O1A MNR . . . E 4 -1.669 12.445 14.657 1 14.21 ? O1A MNR 154 X 1 HETATM 14 O O2A MNR . . . E 4 -3.267 11.687 13.322 1 15.12 ? O2A MNR 154 X 1 HETATM 15 C C1B MNR . . . E 4 -3.535 5.145 14.829 1 10.67 ? C1B MNR 154 X 1 HETATM 16 C C2B MNR . . . E 4 -4.299 4.035 14.494 1 11.44 ? C2B MNR 154 X 1 HETATM 17 C C3B MNR . . . E 4 -3.289 3.044 14.107 1 11.51 ? C3B MNR 154 X 1 HETATM 18 C C4B MNR . . . E 4 -1.964 3.721 14.271 1 10.56 ? C4B MNR 154 X 1 HETATM 19 C CMB MNR . . . E 4 -5.798 3.887 14.52 1 11.36 ? CMB MNR 154 X 1 HETATM 20 C CAB MNR . . . E 4 -3.574 1.656 13.679 1 11.08 ? CAB MNR 154 X 1 HETATM 21 C CBB MNR . . . E 4 -4.549 0.995 14.284 1 12.84 ? CBB MNR 154 X 1 HETATM 22 C C1C MNR . . . E 4 0.402 3.734 14.177 1 8.55 ? C1C MNR 154 X 1 HETATM 23 C C2C MNR . . . E 4 1.652 2.936 13.94 1 10.98 ? C2C MNR 154 X 1 HETATM 24 C C3C MNR . . . E 4 2.748 3.97 14.066 1 13.54 ? C3C MNR 154 X 1 HETATM 25 C C4C MNR . . . E 4 2.009 5.176 14.569 1 10.8 ? C4C MNR 154 X 1 HETATM 26 C CMC MNR . . . E 4 1.765 1.464 13.569 1 10.34 ? CMC MNR 154 X 1 HETATM 27 C CAC MNR . . . E 4 4.165 3.703 14.538 1 13.95 ? CAC MNR 154 X 1 HETATM 28 C CBC MNR . . . E 4 4.799 2.617 14.175 1 15.66 ? CBC MNR 154 X 1 HETATM 29 C C1D MNR . . . E 4 2.113 7.538 15.428 1 12.43 ? C1D MNR 154 X 1 HETATM 30 C C2D MNR . . . E 4 2.96 8.697 15.862 1 13.5 ? C2D MNR 154 X 1 HETATM 31 C C3D MNR . . . E 4 1.959 9.66 16.319 1 13.52 ? C3D MNR 154 X 1 HETATM 32 C C4D MNR . . . E 4 0.668 8.989 16.034 1 11.83 ? C4D MNR 154 X 1 HETATM 33 C CMD MNR . . . E 4 4.461 8.835 15.796 1 13.03 ? CMD MNR 154 X 1 HETATM 34 C CAD MNR . . . E 4 2.175 10.978 17.038 1 15.76 ? CAD MNR 154 X 1 HETATM 35 C CBD MNR . . . E 4 2.418 10.615 18.498 1 18.43 ? CBD MNR 154 X 1 HETATM 36 C CGD MNR . . . E 4 2.677 11.849 19.336 1 22.96 ? CGD MNR 154 X 1 HETATM 37 O O1D MNR . . . E 4 1.737 12.347 19.995 1 22.23 ? O1D MNR 154 X 1 HETATM 38 O O2D MNR . . . E 4 3.84 12.307 19.347 1 26.37 ? O2D MNR 154 X 1 HETATM 39 MN MN MNR . . . E 4 -0.703 6.391 15.049 1 13.13 ? MN MNR 154 X 1 HETATM 40 N NA MNR . . . E 4 -2.127 7.748 15.77 1 11.27 ? NA MNR 154 X 1 HETATM 41 N NB MNR . . . E 4 -2.188 4.982 14.686 1 13.09 ? NB MNR 154 X 1 HETATM 42 N NC MNR . . . E 4 0.674 4.998 14.536 1 12.94 ? NC MNR 154 X 1 HETATM 43 N ND MNR . . . E 4 0.795 7.757 15.533 1 11.45 ? ND MNR 154 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #