data_2O5O # _model_server_result.job_id g9ryLydR0LlEGtuHgs-x2Q _model_server_result.datetime_utc '2024-11-08 01:52:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":154}' # _entry.id 2O5O # _exptl.entry_id 2O5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 615.58 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING MN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.5 _cell.angle_gamma 90 _cell.entry_id 2O5O _cell.length_a 35.427 _cell.length_b 28.667 _cell.length_c 62.995 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 X HIS 93 1_555 E MN MNR . X MNR 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 E MN MNR . X MNR 154 1_555 D O2 NO2 . X NO2 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'C34 H32 Mn N4 O4 5' _chem_comp.formula_weight 615.58 _chem_comp.id MNR _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING MN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A MNR sing 224 n y CHA C4D MNR doub 225 n y CHA HHA MNR sing 226 n n CHB C4A MNR doub 227 n y CHB C1B MNR sing 228 n y CHB HHB MNR sing 229 n n CHC C4B MNR sing 230 n y CHC C1C MNR doub 231 n y CHC HHC MNR sing 232 n n CHD C4C MNR sing 233 n y CHD C1D MNR doub 234 n y CHD HHD MNR sing 235 n n C1A C2A MNR sing 236 n n C1A NA MNR doub 237 n y C2A C3A MNR doub 238 n n C2A CAA MNR sing 239 n n C3A C4A MNR sing 240 n n C3A CMA MNR sing 241 n n C4A NA MNR sing 242 n y CMA HMA1 MNR sing 243 n n CMA HMA2 MNR sing 244 n n CMA HMA3 MNR sing 245 n n CAA CBA MNR sing 246 n n CAA HAA1 MNR sing 247 n n CAA HAA2 MNR sing 248 n n CBA CGA MNR sing 249 n n CBA HBA1 MNR sing 250 n n CBA HBA2 MNR sing 251 n n CGA O1A MNR doub 252 n n CGA O2A MNR sing 253 n n O2A H2A MNR sing 254 n n C1B C2B MNR doub 255 n y C1B NB MNR sing 256 n y C2B C3B MNR sing 257 n y C2B CMB MNR sing 258 n n C3B C4B MNR doub 259 n y C3B CAB MNR sing 260 n n C4B NB MNR sing 261 n y CMB HMB1 MNR sing 262 n n CMB HMB2 MNR sing 263 n n CMB HMB3 MNR sing 264 n n CAB CBB MNR doub 265 n n CAB HAB MNR sing 266 n n CBB HBB1 MNR sing 267 n n CBB HBB2 MNR sing 268 n n C1C C2C MNR sing 269 n n C1C NC MNR sing 270 n y C2C C3C MNR doub 271 n n C2C CMC MNR sing 272 n n C3C C4C MNR sing 273 n n C3C CAC MNR sing 274 n n C4C NC MNR doub 275 n y CMC HMC1 MNR sing 276 n n CMC HMC2 MNR sing 277 n n CMC HMC3 MNR sing 278 n n CAC CBC MNR doub 279 n n CAC HAC MNR sing 280 n n CBC HBC1 MNR sing 281 n n CBC HBC2 MNR sing 282 n n C1D C2D MNR sing 283 n y C1D ND MNR sing 284 n y C2D C3D MNR doub 285 n y C2D CMD MNR sing 286 n n C3D C4D MNR sing 287 n y C3D CAD MNR sing 288 n n C4D ND MNR sing 289 n y CMD HMD1 MNR sing 290 n n CMD HMD2 MNR sing 291 n n CMD HMD3 MNR sing 292 n n CAD CBD MNR sing 293 n n CAD HAD1 MNR sing 294 n n CAD HAD2 MNR sing 295 n n CBD CGD MNR sing 296 n n CBD HBD1 MNR sing 297 n n CBD HBD2 MNR sing 298 n n CGD O1D MNR sing 299 n n CGD O2D MNR doub 300 n n O1D H1D MNR sing 301 n n MN NA MNR sing 302 n n MN NB MNR sing 303 n n MN NC MNR sing 304 n n MN ND MNR sing 305 n n # _atom_sites.entry_id 2O5O _atom_sites.fract_transf_matrix[1][1] 0.028227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007828 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 157 157 SO4 SO4 . C 2 SO4 X 1 158 158 SO4 SO4 . D 3 NO2 X 1 159 159 NO2 NO2 . E 4 MNR X 1 154 154 MNR MNR . F 5 HOH X 1 160 1 HOH HOH . F 5 HOH X 2 161 2 HOH HOH . F 5 HOH X 3 162 3 HOH HOH . F 5 HOH X 4 163 4 HOH HOH . F 5 HOH X 5 164 5 HOH HOH . F 5 HOH X 6 165 6 HOH HOH . F 5 HOH X 7 166 7 HOH HOH . F 5 HOH X 8 167 8 HOH HOH . F 5 HOH X 9 168 9 HOH HOH . F 5 HOH X 10 169 10 HOH HOH . F 5 HOH X 11 170 11 HOH HOH . F 5 HOH X 12 171 12 HOH HOH . F 5 HOH X 13 172 13 HOH HOH . F 5 HOH X 14 173 14 HOH HOH . F 5 HOH X 15 174 15 HOH HOH . F 5 HOH X 16 175 16 HOH HOH . F 5 HOH X 17 176 17 HOH HOH . F 5 HOH X 18 177 18 HOH HOH . F 5 HOH X 19 178 19 HOH HOH . F 5 HOH X 20 179 20 HOH HOH . F 5 HOH X 21 180 21 HOH HOH . F 5 HOH X 22 181 22 HOH HOH . F 5 HOH X 23 182 23 HOH HOH . F 5 HOH X 24 183 24 HOH HOH . F 5 HOH X 25 184 25 HOH HOH . F 5 HOH X 26 185 26 HOH HOH . F 5 HOH X 27 186 27 HOH HOH . F 5 HOH X 28 187 28 HOH HOH . F 5 HOH X 29 188 29 HOH HOH . F 5 HOH X 30 189 30 HOH HOH . F 5 HOH X 31 190 31 HOH HOH . F 5 HOH X 32 191 32 HOH HOH . F 5 HOH X 33 192 33 HOH HOH . F 5 HOH X 34 193 34 HOH HOH . F 5 HOH X 35 194 35 HOH HOH . F 5 HOH X 36 195 36 HOH HOH . F 5 HOH X 37 196 37 HOH HOH . F 5 HOH X 38 197 38 HOH HOH . F 5 HOH X 39 198 39 HOH HOH . F 5 HOH X 40 199 40 HOH HOH . F 5 HOH X 41 200 41 HOH HOH . F 5 HOH X 42 201 42 HOH HOH . F 5 HOH X 43 202 43 HOH HOH . F 5 HOH X 44 203 44 HOH HOH . F 5 HOH X 45 204 45 HOH HOH . F 5 HOH X 46 205 46 HOH HOH . F 5 HOH X 47 206 47 HOH HOH . F 5 HOH X 48 207 48 HOH HOH . F 5 HOH X 49 208 49 HOH HOH . F 5 HOH X 50 209 50 HOH HOH . F 5 HOH X 51 210 51 HOH HOH . F 5 HOH X 52 211 52 HOH HOH . F 5 HOH X 53 212 53 HOH HOH . F 5 HOH X 54 213 54 HOH HOH . F 5 HOH X 55 214 55 HOH HOH . F 5 HOH X 56 215 56 HOH HOH . F 5 HOH X 57 216 57 HOH HOH . F 5 HOH X 58 217 58 HOH HOH . F 5 HOH X 59 218 59 HOH HOH . F 5 HOH X 60 219 60 HOH HOH . F 5 HOH X 61 220 61 HOH HOH . F 5 HOH X 62 221 62 HOH HOH . F 5 HOH X 63 222 63 HOH HOH . F 5 HOH X 64 223 64 HOH HOH . F 5 HOH X 65 224 65 HOH HOH . F 5 HOH X 66 225 66 HOH HOH . F 5 HOH X 67 226 67 HOH HOH . F 5 HOH X 68 227 68 HOH HOH . F 5 HOH X 69 228 69 HOH HOH . F 5 HOH X 70 229 70 HOH HOH . F 5 HOH X 71 230 71 HOH HOH . F 5 HOH X 72 231 72 HOH HOH . F 5 HOH X 73 232 73 HOH HOH . F 5 HOH X 74 233 74 HOH HOH . F 5 HOH X 75 234 75 HOH HOH . F 5 HOH X 76 235 76 HOH HOH . F 5 HOH X 77 236 77 HOH HOH . F 5 HOH X 78 237 78 HOH HOH . F 5 HOH X 79 238 79 HOH HOH . F 5 HOH X 80 239 80 HOH HOH . F 5 HOH X 81 240 81 HOH HOH . F 5 HOH X 82 241 82 HOH HOH . F 5 HOH X 83 242 83 HOH HOH . F 5 HOH X 84 243 84 HOH HOH . F 5 HOH X 85 244 85 HOH HOH . F 5 HOH X 86 245 86 HOH HOH . F 5 HOH X 87 246 87 HOH HOH . F 5 HOH X 88 247 88 HOH HOH . F 5 HOH X 89 248 89 HOH HOH . F 5 HOH X 90 249 90 HOH HOH . F 5 HOH X 91 250 91 HOH HOH . F 5 HOH X 92 251 92 HOH HOH . F 5 HOH X 93 252 93 HOH HOH . F 5 HOH X 94 253 94 HOH HOH . F 5 HOH X 95 254 95 HOH HOH . F 5 HOH X 96 255 96 HOH HOH . F 5 HOH X 97 256 97 HOH HOH . F 5 HOH X 98 257 98 HOH HOH . F 5 HOH X 99 258 99 HOH HOH . F 5 HOH X 100 259 100 HOH HOH . F 5 HOH X 101 260 101 HOH HOH . F 5 HOH X 102 261 102 HOH HOH . F 5 HOH X 103 262 103 HOH HOH . F 5 HOH X 104 263 104 HOH HOH . F 5 HOH X 105 264 105 HOH HOH . F 5 HOH X 106 265 106 HOH HOH . F 5 HOH X 107 266 107 HOH HOH . F 5 HOH X 108 267 108 HOH HOH . F 5 HOH X 109 268 109 HOH HOH . F 5 HOH X 110 269 110 HOH HOH . F 5 HOH X 111 270 111 HOH HOH . F 5 HOH X 112 271 112 HOH HOH . F 5 HOH X 113 272 114 HOH HOH . F 5 HOH X 114 273 115 HOH HOH . F 5 HOH X 115 274 116 HOH HOH . F 5 HOH X 116 275 117 HOH HOH . F 5 HOH X 117 276 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA MNR . . . E 4 -0.498 9.593 16.372 1 11.49 ? CHA MNR 154 X 1 HETATM 2 C CHB MNR . . . E 4 -4.065 6.419 15.296 1 10.54 ? CHB MNR 154 X 1 HETATM 3 C CHC MNR . . . E 4 -0.658 3.256 13.994 1 11.22 ? CHC MNR 154 X 1 HETATM 4 C CHD MNR . . . E 4 2.777 6.275 14.964 1 12.04 ? CHD MNR 154 X 1 HETATM 5 C C1A MNR . . . E 4 -1.811 9.017 16.162 1 12.07 ? C1A MNR 154 X 1 HETATM 6 C C2A MNR . . . E 4 -2.979 9.749 16.462 1 8.68 ? C2A MNR 154 X 1 HETATM 7 C C3A MNR . . . E 4 -4.053 8.777 16.28 1 12.5 ? C3A MNR 154 X 1 HETATM 8 C C4A MNR . . . E 4 -3.352 7.595 15.756 1 10.64 ? C4A MNR 154 X 1 HETATM 9 C CMA MNR . . . E 4 -5.552 8.95 16.383 1 11.75 ? CMA MNR 154 X 1 HETATM 10 C CAA MNR . . . E 4 -3.103 11.215 16.837 1 13.47 ? CAA MNR 154 X 1 HETATM 11 C CBA MNR . . . E 4 -3.654 12.04 15.664 1 13.69 ? CBA MNR 154 X 1 HETATM 12 C CGA MNR . . . E 4 -2.717 12.051 14.463 1 16.27 ? CGA MNR 154 X 1 HETATM 13 O O1A MNR . . . E 4 -1.519 12.408 14.636 1 15.53 ? O1A MNR 154 X 1 HETATM 14 O O2A MNR . . . E 4 -3.195 11.691 13.35 1 15.63 ? O2A MNR 154 X 1 HETATM 15 C C1B MNR . . . E 4 -3.419 5.196 14.838 1 11.04 ? C1B MNR 154 X 1 HETATM 16 C C2B MNR . . . E 4 -4.197 4.084 14.508 1 10.91 ? C2B MNR 154 X 1 HETATM 17 C C3B MNR . . . E 4 -3.179 3.104 14.102 1 11.73 ? C3B MNR 154 X 1 HETATM 18 C C4B MNR . . . E 4 -1.86 3.78 14.247 1 11.15 ? C4B MNR 154 X 1 HETATM 19 C CMB MNR . . . E 4 -5.699 3.915 14.541 1 12.79 ? CMB MNR 154 X 1 HETATM 20 C CAB MNR . . . E 4 -3.444 1.727 13.648 1 11.87 ? CAB MNR 154 X 1 HETATM 21 C CBB MNR . . . E 4 -4.391 1.019 14.253 1 14.4 ? CBB MNR 154 X 1 HETATM 22 C C1C MNR . . . E 4 0.5 3.76 14.169 1 8.73 ? C1C MNR 154 X 1 HETATM 23 C C2C MNR . . . E 4 1.745 2.948 13.919 1 10.98 ? C2C MNR 154 X 1 HETATM 24 C C3C MNR . . . E 4 2.846 3.963 14.066 1 13.19 ? C3C MNR 154 X 1 HETATM 25 C C4C MNR . . . E 4 2.116 5.183 14.571 1 10.91 ? C4C MNR 154 X 1 HETATM 26 C CMC MNR . . . E 4 1.863 1.475 13.511 1 13.02 ? CMC MNR 154 X 1 HETATM 27 C CAC MNR . . . E 4 4.269 3.649 14.497 1 13.29 ? CAC MNR 154 X 1 HETATM 28 C CBC MNR . . . E 4 4.88 2.561 14.077 1 15.26 ? CBC MNR 154 X 1 HETATM 29 C C1D MNR . . . E 4 2.217 7.53 15.418 1 13.12 ? C1D MNR 154 X 1 HETATM 30 C C2D MNR . . . E 4 3.06 8.666 15.854 1 14.08 ? C2D MNR 154 X 1 HETATM 31 C C3D MNR . . . E 4 2.082 9.645 16.323 1 14.16 ? C3D MNR 154 X 1 HETATM 32 C C4D MNR . . . E 4 0.783 8.98 16.054 1 11.98 ? C4D MNR 154 X 1 HETATM 33 C CMD MNR . . . E 4 4.559 8.729 15.848 1 14.48 ? CMD MNR 154 X 1 HETATM 34 C CAD MNR . . . E 4 2.34 10.966 17.023 1 15.66 ? CAD MNR 154 X 1 HETATM 35 C CBD MNR . . . E 4 2.339 10.665 18.515 1 20 ? CBD MNR 154 X 1 HETATM 36 C CGD MNR . . . E 4 2.797 11.856 19.328 1 24.63 ? CGD MNR 154 X 1 HETATM 37 O O1D MNR . . . E 4 1.989 12.371 20.129 1 25.55 ? O1D MNR 154 X 1 HETATM 38 O O2D MNR . . . E 4 3.978 12.253 19.198 1 28.39 ? O2D MNR 154 X 1 HETATM 39 MN MN MNR . . . E 4 -0.584 6.423 15.036 1 12.51 ? MN MNR 154 X 1 HETATM 40 N NA MNR . . . E 4 -2.028 7.787 15.704 1 11.49 ? NA MNR 154 X 1 HETATM 41 N NB MNR . . . E 4 -2.078 5.047 14.656 1 12.48 ? NB MNR 154 X 1 HETATM 42 N NC MNR . . . E 4 0.787 5.021 14.538 1 11.33 ? NC MNR 154 X 1 HETATM 43 N ND MNR . . . E 4 0.909 7.757 15.531 1 11.69 ? ND MNR 154 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #