data_2O5R
#
_model_server_result.job_id            yRvl1wm6ALb6Y8JX5XHy7g 
_model_server_result.datetime_utc      '2024-11-26 14:28:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o5r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":473}' 
#
_entry.id    2O5R 
#
_exptl.entry_id    2O5R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2O5R 
_cell.length_a            69.953 
_cell.length_b            69.953 
_cell.length_c            283.945 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O5R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 13 A MSE 1 1_555 A N VAL 14 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale2 A C LEU 68 A LEU 56 1_555 A N MSE 69 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C MSE 69 A MSE 57 1_555 A N GLU 70 A GLU 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 A C GLU 126 A GLU 114 1_555 A N MSE 127 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale5 A C MSE 127 A MSE 115 1_555 A N ARG 128 A ARG 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 A C GLU 143 A GLU 131 1_555 A N MSE 144 A MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale7 A C MSE 144 A MSE 132 1_555 A N PHE 145 A PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 A C LYS 169 A LYS 157 1_555 A N MSE 170 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale9 A C MSE 170 A MSE 158 1_555 A N PRO 171 A PRO 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale10 A C ILE 197 A ILE 185 1_555 A N MSE 198 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale11 A C MSE 198 A MSE 186 1_555 A N ARG 199 A ARG 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 A C ASP 214 A ASP 202 1_555 A N MSE 215 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale13 A C MSE 215 A MSE 203 1_555 A N LEU 216 A LEU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale14 A C LEU 216 A LEU 204 1_555 A N MSE 217 A MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale15 A C MSE 217 A MSE 205 1_555 A N GLU 218 A GLU 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale16 A C ASP 277 A ASP 265 1_555 A N MSE 278 A MSE 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale17 A C MSE 278 A MSE 266 1_555 A N GLY 279 A GLY 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale18 A C TRP 331 A TRP 319 1_555 A N MSE 332 A MSE 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale19 A C MSE 332 A MSE 320 1_555 A N ASN 333 A ASN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale20 A C ASN 339 A ASN 327 1_555 A N MSE 340 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale21 A C MSE 340 A MSE 328 1_555 A N PRO 341 A PRO 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? 
covale ? covale22 A C GLU 402 A GLU 390 1_555 A N MSE 403 A MSE 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale23 A C MSE 403 A MSE 391 1_555 A N LYS 404 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale24 A C THR 420 A THR 408 1_555 A N MSE 421 A MSE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale25 A C MSE 421 A MSE 409 1_555 A N GLU 422 A GLU 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale26 A C TYR 443 A TYR 431 1_555 A N MSE 444 A MSE 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale27 A C MSE 444 A MSE 432 1_555 A N THR 445 A THR 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2O5R 
_atom_sites.fract_transf_matrix[1][1]    0.01429 
_atom_sites.fract_transf_matrix[1][2]    0.00825 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 470 1 CL CL . 
C 2 CL A 1 471 2 CL CL . 
D 2 CL A 1 472 3 CL CL . 
E 3 GOL A 1 473 4 GOL GOL . 
F 4 HOH A 1 474 5 HOH HOH . 
F 4 HOH A 2 475 6 HOH HOH . 
F 4 HOH A 3 476 7 HOH HOH . 
F 4 HOH A 4 477 8 HOH HOH . 
F 4 HOH A 5 478 9 HOH HOH . 
F 4 HOH A 6 479 10 HOH HOH . 
F 4 HOH A 7 480 11 HOH HOH . 
F 4 HOH A 8 481 12 HOH HOH . 
F 4 HOH A 9 482 13 HOH HOH . 
F 4 HOH A 10 483 14 HOH HOH . 
F 4 HOH A 11 484 15 HOH HOH . 
F 4 HOH A 12 485 16 HOH HOH . 
F 4 HOH A 13 486 17 HOH HOH . 
F 4 HOH A 14 487 18 HOH HOH . 
F 4 HOH A 15 488 19 HOH HOH . 
F 4 HOH A 16 489 20 HOH HOH . 
F 4 HOH A 17 490 21 HOH HOH . 
F 4 HOH A 18 491 22 HOH HOH . 
F 4 HOH A 19 492 23 HOH HOH . 
F 4 HOH A 20 493 24 HOH HOH . 
F 4 HOH A 21 494 25 HOH HOH . 
F 4 HOH A 22 495 26 HOH HOH . 
F 4 HOH A 23 496 27 HOH HOH . 
F 4 HOH A 24 497 28 HOH HOH . 
F 4 HOH A 25 498 29 HOH HOH . 
F 4 HOH A 26 499 30 HOH HOH . 
F 4 HOH A 27 500 31 HOH HOH . 
F 4 HOH A 28 501 32 HOH HOH . 
F 4 HOH A 29 502 33 HOH HOH . 
F 4 HOH A 30 503 34 HOH HOH . 
F 4 HOH A 31 504 35 HOH HOH . 
F 4 HOH A 32 505 36 HOH HOH . 
F 4 HOH A 33 506 37 HOH HOH . 
F 4 HOH A 34 507 38 HOH HOH . 
F 4 HOH A 35 508 39 HOH HOH . 
F 4 HOH A 36 509 40 HOH HOH . 
F 4 HOH A 37 510 41 HOH HOH . 
F 4 HOH A 38 511 42 HOH HOH . 
F 4 HOH A 39 512 43 HOH HOH . 
F 4 HOH A 40 513 44 HOH HOH . 
F 4 HOH A 41 514 45 HOH HOH . 
F 4 HOH A 42 515 46 HOH HOH . 
F 4 HOH A 43 516 47 HOH HOH . 
F 4 HOH A 44 517 48 HOH HOH . 
F 4 HOH A 45 518 49 HOH HOH . 
F 4 HOH A 46 519 50 HOH HOH . 
F 4 HOH A 47 520 51 HOH HOH . 
F 4 HOH A 48 521 52 HOH HOH . 
F 4 HOH A 49 522 53 HOH HOH . 
F 4 HOH A 50 523 54 HOH HOH . 
F 4 HOH A 51 524 55 HOH HOH . 
F 4 HOH A 52 525 56 HOH HOH . 
F 4 HOH A 53 526 57 HOH HOH . 
F 4 HOH A 54 527 58 HOH HOH . 
F 4 HOH A 55 528 59 HOH HOH . 
F 4 HOH A 56 529 60 HOH HOH . 
F 4 HOH A 57 530 61 HOH HOH . 
F 4 HOH A 58 531 62 HOH HOH . 
F 4 HOH A 59 532 63 HOH HOH . 
F 4 HOH A 60 533 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -58.55 17.451 58.998 1 90.65 ? C1 GOL 473 A 1 
HETATM 2 O O1 GOL . . . E 3 -57.711 16.321 59.122 1 90.41 ? O1 GOL 473 A 1 
HETATM 3 C C2 GOL . . . E 3 -59.5 17.569 60.193 1 90.8 ? C2 GOL 473 A 1 
HETATM 4 O O2 GOL . . . E 3 -58.758 17.617 61.395 1 90.85 ? O2 GOL 473 A 1 
HETATM 5 C C3 GOL . . . E 3 -60.542 16.44 60.214 1 90.85 ? C3 GOL 473 A 1 
HETATM 6 O O3 GOL . . . E 3 -60.105 15.309 60.942 1 90.58 ? O3 GOL 473 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#