data_2O5T # _model_server_result.job_id 1TkiO54uhiueDEYmqX0Dsw _model_server_result.datetime_utc '2024-11-08 04:07:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 2O5T # _exptl.entry_id 2O5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.575 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING CO' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.49 _cell.angle_gamma 90 _cell.entry_id 2O5T _cell.length_a 35.315 _cell.length_b 28.746 _cell.length_c 63.034 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 X HIS 93 1_555 D CO COH . X COH 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc2 D CO COH . X COH 154 1_555 E O HOH . X HOH 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'C34 H32 Co N4 O4' _chem_comp.formula_weight 619.575 _chem_comp.id COH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING CO' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO NA COH sing 70 n n CO NB COH sing 71 n n CO NC COH sing 72 n n CO ND COH sing 73 n n CHA C1A COH doub 74 n n CHA C4D COH sing 75 n n CHA HHA COH sing 76 n n CHB C4A COH sing 77 n n CHB C1B COH doub 78 n n CHB HHB COH sing 79 n n CHC C4B COH doub 80 n n CHC C1C COH sing 81 n n CHC HHC COH sing 82 n n CHD C4C COH doub 83 n n CHD C1D COH sing 84 n n CHD HHD COH sing 85 n n NA C1A COH sing 86 n n NA C4A COH doub 87 n n C1A C2A COH sing 88 n n C2A C3A COH doub 89 n n C2A CAA COH sing 90 n n C3A C4A COH sing 91 n n C3A CMA COH sing 92 n n CMA HMA1 COH sing 93 n n CMA HMA2 COH sing 94 n n CMA HMA3 COH sing 95 n n CAA CBA COH sing 96 n n CAA HAA1 COH sing 97 n n CAA HAA2 COH sing 98 n n CBA CGA COH sing 99 n n CBA HBA1 COH sing 100 n n CBA HBA2 COH sing 101 n n CGA O1A COH doub 102 n n CGA O2A COH sing 103 n n O2A H2A COH sing 104 n n NB C1B COH sing 105 n n NB C4B COH sing 106 n n C1B C2B COH sing 107 n n C2B C3B COH doub 108 n n C2B CMB COH sing 109 n n C3B C4B COH sing 110 n n C3B CAB COH sing 111 n n CMB HMB1 COH sing 112 n n CMB HMB2 COH sing 113 n n CMB HMB3 COH sing 114 n n CAB CBB COH doub 115 n n CAB HAB COH sing 116 n n CBB HBB1 COH sing 117 n n CBB HBB2 COH sing 118 n n NC C1C COH doub 119 n n NC C4C COH sing 120 n n C1C C2C COH sing 121 n n C2C C3C COH doub 122 n n C2C CMC COH sing 123 n n C3C C4C COH sing 124 n n C3C CAC COH sing 125 n n CMC HMC1 COH sing 126 n n CMC HMC2 COH sing 127 n n CMC HMC3 COH sing 128 n n CAC CBC COH doub 129 n n CAC HAC COH sing 130 n n CBC HBC1 COH sing 131 n n CBC HBC2 COH sing 132 n n ND C1D COH sing 133 n y ND C4D COH sing 134 n y C1D C2D COH doub 135 n y C2D C3D COH sing 136 n y C2D CMD COH sing 137 n n C3D C4D COH doub 138 n y C3D CAD COH sing 139 n n CMD HMD1 COH sing 140 n n CMD HMD2 COH sing 141 n n CMD HMD3 COH sing 142 n n CAD CBD COH sing 143 n n CAD HAD1 COH sing 144 n n CAD HAD2 COH sing 145 n n CBD CGD COH sing 146 n n CBD HBD1 COH sing 147 n n CBD HBD2 COH sing 148 n n CGD O1D COH doub 149 n n CGD O2D COH sing 150 n n O2D H2D COH sing 151 n n # _atom_sites.entry_id 2O5T _atom_sites.fract_transf_matrix[1][1] 0.028317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008382 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 157 157 SO4 SO4 . C 2 SO4 X 1 158 158 SO4 SO4 . D 3 COH X 1 154 154 COH COH . E 4 HOH X 1 159 159 HOH HOH . E 4 HOH X 2 160 160 HOH HOH . E 4 HOH X 3 161 161 HOH HOH . E 4 HOH X 4 162 162 HOH HOH . E 4 HOH X 5 163 163 HOH HOH . E 4 HOH X 6 164 164 HOH HOH . E 4 HOH X 7 165 165 HOH HOH . E 4 HOH X 8 166 166 HOH HOH . E 4 HOH X 9 167 167 HOH HOH . E 4 HOH X 10 168 168 HOH HOH . E 4 HOH X 11 169 169 HOH HOH . E 4 HOH X 12 170 170 HOH HOH . E 4 HOH X 13 171 171 HOH HOH . E 4 HOH X 14 172 172 HOH HOH . E 4 HOH X 15 173 173 HOH HOH . E 4 HOH X 16 174 174 HOH HOH . E 4 HOH X 17 175 175 HOH HOH . E 4 HOH X 18 176 176 HOH HOH . E 4 HOH X 19 177 177 HOH HOH . E 4 HOH X 20 178 178 HOH HOH . E 4 HOH X 21 179 179 HOH HOH . E 4 HOH X 22 180 180 HOH HOH . E 4 HOH X 23 181 181 HOH HOH . E 4 HOH X 24 182 182 HOH HOH . E 4 HOH X 25 183 183 HOH HOH . E 4 HOH X 26 184 184 HOH HOH . E 4 HOH X 27 185 185 HOH HOH . E 4 HOH X 28 186 186 HOH HOH . E 4 HOH X 29 187 187 HOH HOH . E 4 HOH X 30 188 188 HOH HOH . E 4 HOH X 31 189 189 HOH HOH . E 4 HOH X 32 190 190 HOH HOH . E 4 HOH X 33 191 191 HOH HOH . E 4 HOH X 34 192 192 HOH HOH . E 4 HOH X 35 193 193 HOH HOH . E 4 HOH X 36 194 194 HOH HOH . E 4 HOH X 37 195 195 HOH HOH . E 4 HOH X 38 196 196 HOH HOH . E 4 HOH X 39 197 197 HOH HOH . E 4 HOH X 40 198 198 HOH HOH . E 4 HOH X 41 199 199 HOH HOH . E 4 HOH X 42 200 200 HOH HOH . E 4 HOH X 43 201 201 HOH HOH . E 4 HOH X 44 202 202 HOH HOH . E 4 HOH X 45 203 203 HOH HOH . E 4 HOH X 46 204 204 HOH HOH . E 4 HOH X 47 205 205 HOH HOH . E 4 HOH X 48 206 206 HOH HOH . E 4 HOH X 49 207 207 HOH HOH . E 4 HOH X 50 208 208 HOH HOH . E 4 HOH X 51 209 209 HOH HOH . E 4 HOH X 52 210 210 HOH HOH . E 4 HOH X 53 211 211 HOH HOH . E 4 HOH X 54 212 212 HOH HOH . E 4 HOH X 55 213 213 HOH HOH . E 4 HOH X 56 214 214 HOH HOH . E 4 HOH X 57 215 215 HOH HOH . E 4 HOH X 58 216 216 HOH HOH . E 4 HOH X 59 217 217 HOH HOH . E 4 HOH X 60 218 218 HOH HOH . E 4 HOH X 61 219 219 HOH HOH . E 4 HOH X 62 220 220 HOH HOH . E 4 HOH X 63 221 221 HOH HOH . E 4 HOH X 64 222 222 HOH HOH . E 4 HOH X 65 223 223 HOH HOH . E 4 HOH X 66 224 224 HOH HOH . E 4 HOH X 67 225 225 HOH HOH . E 4 HOH X 68 226 226 HOH HOH . E 4 HOH X 69 227 227 HOH HOH . E 4 HOH X 70 228 228 HOH HOH . E 4 HOH X 71 229 229 HOH HOH . E 4 HOH X 72 230 230 HOH HOH . E 4 HOH X 73 231 231 HOH HOH . E 4 HOH X 74 232 232 HOH HOH . E 4 HOH X 75 233 233 HOH HOH . E 4 HOH X 76 234 234 HOH HOH . E 4 HOH X 77 235 235 HOH HOH . E 4 HOH X 78 236 236 HOH HOH . E 4 HOH X 79 237 237 HOH HOH . E 4 HOH X 80 238 238 HOH HOH . E 4 HOH X 81 239 239 HOH HOH . E 4 HOH X 82 240 240 HOH HOH . E 4 HOH X 83 241 241 HOH HOH . E 4 HOH X 84 242 242 HOH HOH . E 4 HOH X 85 243 243 HOH HOH . E 4 HOH X 86 244 244 HOH HOH . E 4 HOH X 87 245 245 HOH HOH . E 4 HOH X 88 246 246 HOH HOH . E 4 HOH X 89 247 247 HOH HOH . E 4 HOH X 90 248 248 HOH HOH . E 4 HOH X 91 249 249 HOH HOH . E 4 HOH X 92 250 250 HOH HOH . E 4 HOH X 93 251 251 HOH HOH . E 4 HOH X 94 252 252 HOH HOH . E 4 HOH X 95 253 253 HOH HOH . E 4 HOH X 96 254 254 HOH HOH . E 4 HOH X 97 255 255 HOH HOH . E 4 HOH X 98 256 256 HOH HOH . E 4 HOH X 99 257 257 HOH HOH . E 4 HOH X 100 258 258 HOH HOH . E 4 HOH X 101 259 259 HOH HOH . E 4 HOH X 102 260 260 HOH HOH . E 4 HOH X 103 261 261 HOH HOH . E 4 HOH X 104 262 262 HOH HOH . E 4 HOH X 105 263 263 HOH HOH . E 4 HOH X 106 264 264 HOH HOH . E 4 HOH X 107 265 265 HOH HOH . E 4 HOH X 108 266 266 HOH HOH . E 4 HOH X 109 267 267 HOH HOH . E 4 HOH X 110 268 268 HOH HOH . E 4 HOH X 111 270 270 HOH HOH . E 4 HOH X 112 271 271 HOH HOH . E 4 HOH X 113 272 272 HOH HOH . E 4 HOH X 114 273 273 HOH HOH . E 4 HOH X 115 274 274 HOH HOH . E 4 HOH X 116 275 275 HOH HOH . E 4 HOH X 117 276 276 HOH HOH . E 4 HOH X 118 277 277 HOH HOH . E 4 HOH X 119 278 278 HOH HOH . E 4 HOH X 120 279 279 HOH HOH . E 4 HOH X 121 280 280 HOH HOH . E 4 HOH X 122 281 281 HOH HOH . E 4 HOH X 123 282 282 HOH HOH . E 4 HOH X 124 283 283 HOH HOH . E 4 HOH X 125 284 284 HOH HOH . E 4 HOH X 126 285 285 HOH HOH . E 4 HOH X 127 286 286 HOH HOH . E 4 HOH X 128 287 287 HOH HOH . E 4 HOH X 129 288 288 HOH HOH . E 4 HOH X 130 290 290 HOH HOH . E 4 HOH X 131 291 291 HOH HOH . E 4 HOH X 132 292 292 HOH HOH . E 4 HOH X 133 293 293 HOH HOH . E 4 HOH X 134 294 294 HOH HOH . E 4 HOH X 135 295 295 HOH HOH . E 4 HOH X 136 296 296 HOH HOH . E 4 HOH X 137 297 297 HOH HOH . E 4 HOH X 138 298 298 HOH HOH . E 4 HOH X 139 299 299 HOH HOH . E 4 HOH X 140 300 300 HOH HOH . E 4 HOH X 141 301 301 HOH HOH . E 4 HOH X 142 302 302 HOH HOH . E 4 HOH X 143 303 303 HOH HOH . E 4 HOH X 144 304 304 HOH HOH . E 4 HOH X 145 305 305 HOH HOH . E 4 HOH X 146 306 306 HOH HOH . E 4 HOH X 147 307 307 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO COH . . . D 3 0.854 -6.309 15.002 1 19.85 ? CO COH 154 X 1 HETATM 2 C CHA COH . . . D 3 0.692 -9.553 16.279 1 15.33 ? CHA COH 154 X 1 HETATM 3 C CHB COH . . . D 3 4.37 -6.387 15.215 1 13.61 ? CHB COH 154 X 1 HETATM 4 C CHC COH . . . D 3 0.955 -3.211 13.849 1 17.08 ? CHC COH 154 X 1 HETATM 5 C CHD COH . . . D 3 -2.542 -6.112 14.866 1 17.89 ? CHD COH 154 X 1 HETATM 6 N NA COH . . . D 3 2.253 -7.712 15.663 1 16.4 ? NA COH 154 X 1 HETATM 7 C C1A COH . . . D 3 2.026 -8.988 16.101 1 16.22 ? C1A COH 154 X 1 HETATM 8 C C2A COH . . . D 3 3.177 -9.728 16.407 1 16.87 ? C2A COH 154 X 1 HETATM 9 C C3A COH . . . D 3 4.263 -8.755 16.194 1 15.15 ? C3A COH 154 X 1 HETATM 10 C C4A COH . . . D 3 3.591 -7.55 15.668 1 15.16 ? C4A COH 154 X 1 HETATM 11 C CMA COH . . . D 3 5.767 -8.884 16.32 1 13.56 ? CMA COH 154 X 1 HETATM 12 C CAA COH . . . D 3 3.328 -11.18 16.873 1 16.28 ? CAA COH 154 X 1 HETATM 13 C CBA COH . . . D 3 3.798 -12.091 15.741 1 22.34 ? CBA COH 154 X 1 HETATM 14 C CGA COH . . . D 3 2.84 -12.025 14.559 1 23.66 ? CGA COH 154 X 1 HETATM 15 O O1A COH . . . D 3 1.677 -12.431 14.764 1 23.89 ? O1A COH 154 X 1 HETATM 16 O O2A COH . . . D 3 3.253 -11.534 13.463 1 24.44 ? O2A COH 154 X 1 HETATM 17 N NB COH . . . D 3 2.392 -4.989 14.571 1 20.05 ? NB COH 154 X 1 HETATM 18 C C1B COH . . . D 3 3.734 -5.152 14.722 1 18.17 ? C1B COH 154 X 1 HETATM 19 C C2B COH . . . D 3 4.497 -4.049 14.356 1 18.25 ? C2B COH 154 X 1 HETATM 20 C C3B COH . . . D 3 3.461 -3.083 13.917 1 17.35 ? C3B COH 154 X 1 HETATM 21 C C4B COH . . . D 3 2.153 -3.749 14.098 1 18.54 ? C4B COH 154 X 1 HETATM 22 C CMB COH . . . D 3 6.01 -3.905 14.376 1 17.02 ? CMB COH 154 X 1 HETATM 23 C CAB COH . . . D 3 3.682 -1.695 13.448 1 14.84 ? CAB COH 154 X 1 HETATM 24 C CBB COH . . . D 3 4.609 -0.953 14.047 1 19.48 ? CBB COH 154 X 1 HETATM 25 N NC COH . . . D 3 -0.514 -4.915 14.478 1 17.07 ? NC COH 154 X 1 HETATM 26 C C1C COH . . . D 3 -0.214 -3.674 14.072 1 15 ? C1C COH 154 X 1 HETATM 27 C C2C COH . . . D 3 -1.432 -2.85 13.847 1 14.72 ? C2C COH 154 X 1 HETATM 28 C C3C COH . . . D 3 -2.579 -3.818 14.023 1 17.56 ? C3C COH 154 X 1 HETATM 29 C C4C COH . . . D 3 -1.86 -5.041 14.514 1 15.6 ? C4C COH 154 X 1 HETATM 30 C CMC COH . . . D 3 -1.41 -1.428 13.298 1 14.98 ? CMC COH 154 X 1 HETATM 31 C CAC COH . . . D 3 -4.02 -3.57 14.481 1 18.31 ? CAC COH 154 X 1 HETATM 32 C CBC COH . . . D 3 -4.739 -2.532 14.078 1 20.79 ? CBC COH 154 X 1 HETATM 33 N ND COH . . . D 3 -0.676 -7.614 15.457 1 18.8 ? ND COH 154 X 1 HETATM 34 C C1D COH . . . D 3 -1.998 -7.371 15.345 1 20.22 ? C1D COH 154 X 1 HETATM 35 C C2D COH . . . D 3 -2.832 -8.521 15.752 1 19.27 ? C2D COH 154 X 1 HETATM 36 C C3D COH . . . D 3 -1.861 -9.489 16.247 1 19.48 ? C3D COH 154 X 1 HETATM 37 C C4D COH . . . D 3 -0.557 -8.849 15.99 1 18.6 ? C4D COH 154 X 1 HETATM 38 C CMD COH . . . D 3 -4.332 -8.583 15.861 1 17.28 ? CMD COH 154 X 1 HETATM 39 C CAD COH . . . D 3 -2.168 -10.801 16.968 1 19.24 ? CAD COH 154 X 1 HETATM 40 C CBD COH . . . D 3 -2.321 -10.411 18.421 1 21.25 ? CBD COH 154 X 1 HETATM 41 C CGD COH . . . D 3 -2.42 -11.652 19.287 1 24.7 ? CGD COH 154 X 1 HETATM 42 O O1D COH . . . D 3 -1.414 -12.136 19.832 1 25.74 ? O1D COH 154 X 1 HETATM 43 O O2D COH . . . D 3 -3.549 -12.157 19.429 1 27.32 ? O2D COH 154 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #