data_2O5Y
#
_model_server_result.job_id            B6I1q0_Z7L3nk5ki8R_u3w 
_model_server_result.datetime_utc      '2025-07-19 00:54:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":249}' 
#
_entry.id    2O5Y 
#
_exptl.entry_id    2O5Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.462 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PROGESTERONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2O5Y 
_cell.length_a            128.354 
_cell.length_b            128.354 
_cell.length_c            91.816 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 
B,E,F,G,H,I,J,K,L,M,N,O,P,R 2 1,2 
A,C,D,Q 2 3,4 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -30.605333 
3 'crystal symmetry operation' 3_654 -x+y+1,-x,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 128.354 0 -30.605333 
4 'crystal symmetry operation' 4_655 y+1,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 128.354 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf4 B SG CYS 146 H CYS 142 1_555 B SG CYS 202 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
#
_chem_comp.formula           'C21 H30 O2' 
_chem_comp.formula_weight    314.462 
_chem_comp.id                STR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PROGESTERONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 STR sing 294 n n 
C1 C10 STR sing 295 n n 
C1 H11 STR sing 296 n n 
C1 H12 STR sing 297 n n 
C2 C3 STR sing 298 n n 
C2 H21 STR sing 299 n n 
C2 H22 STR sing 300 n n 
C3 O3 STR doub 301 n n 
C3 C4 STR sing 302 n n 
C4 C5 STR doub 303 n n 
C4 H4 STR sing 304 n n 
C5 C6 STR sing 305 n n 
C5 C10 STR sing 306 n n 
C6 C7 STR sing 307 n n 
C6 H61 STR sing 308 n n 
C6 H62 STR sing 309 n n 
C7 C8 STR sing 310 n n 
C7 H71 STR sing 311 n n 
C7 H72 STR sing 312 n n 
C8 C9 STR sing 313 n n 
C8 C14 STR sing 314 n n 
C8 H8 STR sing 315 n n 
C9 C10 STR sing 316 n n 
C9 C11 STR sing 317 n n 
C9 H9 STR sing 318 n n 
C10 C19 STR sing 319 n n 
C11 C12 STR sing 320 n n 
C11 H111 STR sing 321 n n 
C11 H112 STR sing 322 n n 
C12 C13 STR sing 323 n n 
C12 H121 STR sing 324 n n 
C12 H122 STR sing 325 n n 
C13 C14 STR sing 326 n n 
C13 C17 STR sing 327 n n 
C13 C18 STR sing 328 n n 
C14 C15 STR sing 329 n n 
C14 H14 STR sing 330 n n 
C15 C16 STR sing 331 n n 
C15 H151 STR sing 332 n n 
C15 H152 STR sing 333 n n 
C16 C17 STR sing 334 n n 
C16 H161 STR sing 335 n n 
C16 H162 STR sing 336 n n 
C17 C20 STR sing 337 n n 
C17 H17 STR sing 338 n n 
C18 H181 STR sing 339 n n 
C18 H182 STR sing 340 n n 
C18 H183 STR sing 341 n n 
C19 H191 STR sing 342 n n 
C19 H192 STR sing 343 n n 
C19 H193 STR sing 344 n n 
C20 O20 STR doub 345 n n 
C20 C21 STR sing 346 n n 
C21 H211 STR sing 347 n n 
C21 H212 STR sing 348 n n 
C21 H213 STR sing 349 n n 
#
_atom_sites.entry_id                     2O5Y 
_atom_sites.fract_transf_matrix[1][1]    0.007791 
_atom_sites.fract_transf_matrix[1][2]    0.004498 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008996 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010891 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 L 1 215 204 SO4 SO4 . 
D 3 SO4 L 1 216 206 SO4 SO4 . 
E 3 SO4 H 1 201 201 SO4 SO4 . 
F 3 SO4 H 1 239 202 SO4 SO4 . 
G 3 SO4 H 1 240 203 SO4 SO4 . 
H 3 SO4 H 1 241 205 SO4 SO4 . 
I 3 SO4 H 1 242 207 SO4 SO4 . 
J 3 SO4 H 1 243 208 SO4 SO4 . 
K 3 SO4 H 1 244 209 SO4 SO4 . 
L 3 SO4 H 1 245 210 SO4 SO4 . 
M 3 SO4 H 1 246 211 SO4 SO4 . 
N 3 SO4 H 1 247 212 SO4 SO4 . 
O 3 SO4 H 1 248 213 SO4 SO4 . 
P 4 STR H 1 249 101 STR STR . 
Q 5 HOH L 1 217 1 HOH HOH . 
Q 5 HOH L 2 218 4 HOH HOH . 
Q 5 HOH L 3 219 8 HOH HOH . 
Q 5 HOH L 4 220 9 HOH HOH . 
Q 5 HOH L 5 221 10 HOH HOH . 
Q 5 HOH L 6 222 12 HOH HOH . 
Q 5 HOH L 7 223 13 HOH HOH . 
Q 5 HOH L 8 224 18 HOH HOH . 
Q 5 HOH L 9 225 19 HOH HOH . 
Q 5 HOH L 10 226 21 HOH HOH . 
Q 5 HOH L 11 227 22 HOH HOH . 
Q 5 HOH L 12 228 25 HOH HOH . 
Q 5 HOH L 13 229 27 HOH HOH . 
Q 5 HOH L 14 230 28 HOH HOH . 
Q 5 HOH L 15 231 30 HOH HOH . 
Q 5 HOH L 16 232 33 HOH HOH . 
Q 5 HOH L 17 233 38 HOH HOH . 
Q 5 HOH L 18 234 39 HOH HOH . 
Q 5 HOH L 19 235 40 HOH HOH . 
Q 5 HOH L 20 236 41 HOH HOH . 
Q 5 HOH L 21 237 42 HOH HOH . 
Q 5 HOH L 22 238 43 HOH HOH . 
Q 5 HOH L 23 239 44 HOH HOH . 
Q 5 HOH L 24 240 46 HOH HOH . 
Q 5 HOH L 25 241 48 HOH HOH . 
Q 5 HOH L 26 242 50 HOH HOH . 
Q 5 HOH L 27 243 52 HOH HOH . 
Q 5 HOH L 28 244 54 HOH HOH . 
Q 5 HOH L 29 245 56 HOH HOH . 
Q 5 HOH L 30 246 61 HOH HOH . 
Q 5 HOH L 31 247 62 HOH HOH . 
Q 5 HOH L 32 248 63 HOH HOH . 
Q 5 HOH L 33 249 64 HOH HOH . 
R 5 HOH H 1 250 2 HOH HOH . 
R 5 HOH H 2 251 3 HOH HOH . 
R 5 HOH H 3 252 5 HOH HOH . 
R 5 HOH H 4 253 6 HOH HOH . 
R 5 HOH H 5 254 7 HOH HOH . 
R 5 HOH H 6 255 11 HOH HOH . 
R 5 HOH H 7 256 14 HOH HOH . 
R 5 HOH H 8 257 15 HOH HOH . 
R 5 HOH H 9 258 16 HOH HOH . 
R 5 HOH H 10 259 17 HOH HOH . 
R 5 HOH H 11 260 20 HOH HOH . 
R 5 HOH H 12 261 23 HOH HOH . 
R 5 HOH H 13 262 24 HOH HOH . 
R 5 HOH H 14 263 26 HOH HOH . 
R 5 HOH H 15 264 29 HOH HOH . 
R 5 HOH H 16 265 31 HOH HOH . 
R 5 HOH H 17 266 32 HOH HOH . 
R 5 HOH H 18 267 34 HOH HOH . 
R 5 HOH H 19 268 35 HOH HOH . 
R 5 HOH H 20 269 36 HOH HOH . 
R 5 HOH H 21 270 37 HOH HOH . 
R 5 HOH H 22 271 45 HOH HOH . 
R 5 HOH H 23 272 47 HOH HOH . 
R 5 HOH H 24 273 49 HOH HOH . 
R 5 HOH H 25 274 51 HOH HOH . 
R 5 HOH H 26 275 53 HOH HOH . 
R 5 HOH H 27 276 55 HOH HOH . 
R 5 HOH H 28 277 57 HOH HOH . 
R 5 HOH H 29 278 58 HOH HOH . 
R 5 HOH H 30 279 59 HOH HOH . 
R 5 HOH H 31 280 60 HOH HOH . 
R 5 HOH H 32 281 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 STR . . . P 4 67.279 -6.119 -21.078 1 35.29 ? C1 STR 249 H 1 
HETATM 2 C C2 STR . . . P 4 66.354 -6.925 -21.974 1 34.92 ? C2 STR 249 H 1 
HETATM 3 C C3 STR . . . P 4 64.956 -6.594 -21.546 1 35.48 ? C3 STR 249 H 1 
HETATM 4 O O3 STR . . . P 4 64.117 -7.472 -21.597 1 36.6 ? O3 STR 249 H 1 
HETATM 5 C C4 STR . . . P 4 64.632 -5.234 -21.061 1 35.14 ? C4 STR 249 H 1 
HETATM 6 C C5 STR . . . P 4 65.593 -4.305 -21.019 1 35.96 ? C5 STR 249 H 1 
HETATM 7 C C6 STR . . . P 4 65.212 -2.883 -20.724 1 35.95 ? C6 STR 249 H 1 
HETATM 8 C C7 STR . . . P 4 66.234 -2.232 -19.776 1 34.72 ? C7 STR 249 H 1 
HETATM 9 C C8 STR . . . P 4 67.654 -2.38 -20.27 1 33.83 ? C8 STR 249 H 1 
HETATM 10 C C9 STR . . . P 4 67.996 -3.879 -20.336 1 35.63 ? C9 STR 249 H 1 
HETATM 11 C C10 STR . . . P 4 67.051 -4.638 -21.277 1 36.37 ? C10 STR 249 H 1 
HETATM 12 C C11 STR . . . P 4 69.475 -4.164 -20.686 1 35.53 ? C11 STR 249 H 1 
HETATM 13 C C12 STR . . . P 4 70.493 -3.357 -19.875 1 34.93 ? C12 STR 249 H 1 
HETATM 14 C C13 STR . . . P 4 70.082 -1.883 -19.841 1 35.49 ? C13 STR 249 H 1 
HETATM 15 C C14 STR . . . P 4 68.649 -1.72 -19.33 1 34.44 ? C14 STR 249 H 1 
HETATM 16 C C15 STR . . . P 4 68.483 -0.257 -18.921 1 33.09 ? C15 STR 249 H 1 
HETATM 17 C C16 STR . . . P 4 69.904 0.182 -18.545 1 33.15 ? C16 STR 249 H 1 
HETATM 18 C C17 STR . . . P 4 70.772 -1.07 -18.743 1 34.11 ? C17 STR 249 H 1 
HETATM 19 C C18 STR . . . P 4 70.29 -1.288 -21.263 1 35.72 ? C18 STR 249 H 1 
HETATM 20 C C19 STR . . . P 4 67.306 -4.246 -22.737 1 39.68 ? C19 STR 249 H 1 
HETATM 21 C C20 STR . . . P 4 72.236 -0.802 -18.974 1 32.24 ? C20 STR 249 H 1 
HETATM 22 O O20 STR . . . P 4 72.61 0.349 -18.955 1 30.62 ? O20 STR 249 H 1 
HETATM 23 C C21 STR . . . P 4 73.196 -1.939 -19.198 1 30.93 ? C21 STR 249 H 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#