data_2O63
#
_model_server_result.job_id            HrtbFz_GlhRs6HO0Es6Q_Q 
_model_server_result.datetime_utc      '2024-11-23 00:05:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    2O63 
#
_exptl.entry_id    2O63 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.235 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2O63 
_cell.length_a            98.711 
_cell.length_b            98.711 
_cell.length_c            80.596 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H10 O8' 
_chem_comp.formula_weight    318.235 
_chem_comp.id                MYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2-(3,4,5-TRIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-4H-1-BENZOPYRAN-4-ONE;3,3',4',5,5',7-HEXAHYDROXYFLAVONE;MYRICETIN;CANNABISCETIN" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MYC doub 247 n y 
C1 C6 MYC sing 248 n y 
C1 H1 MYC sing 249 n n 
C2 C3 MYC sing 250 n y 
C2 O30 MYC sing 251 n n 
C3 C4 MYC doub 252 n y 
C3 C9 MYC sing 253 n y 
C4 C5 MYC sing 254 n y 
C4 O12 MYC sing 255 n y 
C5 C6 MYC doub 256 n y 
C5 H5 MYC sing 257 n n 
C6 O29 MYC sing 258 n n 
C9 C10 MYC sing 259 n y 
C9 O13 MYC doub 260 n n 
C10 C11 MYC doub 261 n y 
C10 O27 MYC sing 262 n n 
C11 C14 MYC sing 263 n y 
C11 O12 MYC sing 264 n y 
C14 C15 MYC doub 265 n y 
C14 C19 MYC sing 266 n y 
C15 C16 MYC sing 267 n y 
C15 H15 MYC sing 268 n n 
C16 C17 MYC doub 269 n y 
C16 O25 MYC sing 270 n n 
C17 C18 MYC sing 271 n y 
C17 O24 MYC sing 272 n n 
C18 C19 MYC doub 273 n y 
C18 O23 MYC sing 274 n n 
C19 H19 MYC sing 275 n n 
O23 HO3 MYC sing 276 n n 
O24 HO4 MYC sing 277 n n 
O25 HO5 MYC sing 278 n n 
O27 HO7 MYC sing 279 n n 
O29 HO9 MYC sing 280 n n 
O30 HO0 MYC sing 281 n n 
#
_atom_sites.entry_id                     2O63 
_atom_sites.fract_transf_matrix[1][1]    0.010131 
_atom_sites.fract_transf_matrix[1][2]    0.005849 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011698 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMD A 1 401 1 IMD IMD . 
C 2 IMD A 1 402 2 IMD IMD . 
D 2 IMD A 1 403 3 IMD IMD . 
E 3 MYC A 1 501 1 MYC MYC . 
F 4 HOH A 1 502 1 HOH HOH . 
F 4 HOH A 2 503 2 HOH HOH . 
F 4 HOH A 3 504 3 HOH HOH . 
F 4 HOH A 4 505 4 HOH HOH . 
F 4 HOH A 5 506 5 HOH HOH . 
F 4 HOH A 6 507 6 HOH HOH . 
F 4 HOH A 7 508 7 HOH HOH . 
F 4 HOH A 8 509 8 HOH HOH . 
F 4 HOH A 9 510 9 HOH HOH . 
F 4 HOH A 10 511 10 HOH HOH . 
F 4 HOH A 11 512 11 HOH HOH . 
F 4 HOH A 12 513 12 HOH HOH . 
F 4 HOH A 13 514 13 HOH HOH . 
F 4 HOH A 14 515 14 HOH HOH . 
F 4 HOH A 15 516 15 HOH HOH . 
F 4 HOH A 16 517 16 HOH HOH . 
F 4 HOH A 17 518 17 HOH HOH . 
F 4 HOH A 18 519 18 HOH HOH . 
F 4 HOH A 19 520 19 HOH HOH . 
F 4 HOH A 20 521 20 HOH HOH . 
F 4 HOH A 21 522 21 HOH HOH . 
F 4 HOH A 22 523 22 HOH HOH . 
F 4 HOH A 23 524 23 HOH HOH . 
F 4 HOH A 24 525 24 HOH HOH . 
F 4 HOH A 25 526 25 HOH HOH . 
F 4 HOH A 26 527 26 HOH HOH . 
F 4 HOH A 27 528 27 HOH HOH . 
F 4 HOH A 28 529 28 HOH HOH . 
F 4 HOH A 29 530 29 HOH HOH . 
F 4 HOH A 30 531 30 HOH HOH . 
F 4 HOH A 31 532 31 HOH HOH . 
F 4 HOH A 32 533 32 HOH HOH . 
F 4 HOH A 33 534 33 HOH HOH . 
F 4 HOH A 34 535 34 HOH HOH . 
F 4 HOH A 35 536 35 HOH HOH . 
F 4 HOH A 36 537 36 HOH HOH . 
F 4 HOH A 37 538 37 HOH HOH . 
F 4 HOH A 38 539 38 HOH HOH . 
F 4 HOH A 39 540 39 HOH HOH . 
F 4 HOH A 40 541 40 HOH HOH . 
F 4 HOH A 41 542 41 HOH HOH . 
F 4 HOH A 42 543 42 HOH HOH . 
F 4 HOH A 43 544 43 HOH HOH . 
F 4 HOH A 44 545 44 HOH HOH . 
F 4 HOH A 45 546 45 HOH HOH . 
F 4 HOH A 46 547 46 HOH HOH . 
F 4 HOH A 47 548 47 HOH HOH . 
F 4 HOH A 48 549 48 HOH HOH . 
F 4 HOH A 49 550 49 HOH HOH . 
F 4 HOH A 50 551 50 HOH HOH . 
F 4 HOH A 51 552 51 HOH HOH . 
F 4 HOH A 52 553 52 HOH HOH . 
F 4 HOH A 53 554 53 HOH HOH . 
F 4 HOH A 54 555 54 HOH HOH . 
F 4 HOH A 55 556 55 HOH HOH . 
F 4 HOH A 56 557 56 HOH HOH . 
F 4 HOH A 57 558 57 HOH HOH . 
F 4 HOH A 58 559 58 HOH HOH . 
F 4 HOH A 59 560 59 HOH HOH . 
F 4 HOH A 60 561 60 HOH HOH . 
F 4 HOH A 61 562 61 HOH HOH . 
F 4 HOH A 62 563 62 HOH HOH . 
F 4 HOH A 63 564 63 HOH HOH . 
F 4 HOH A 64 565 64 HOH HOH . 
F 4 HOH A 65 566 65 HOH HOH . 
F 4 HOH A 66 567 66 HOH HOH . 
F 4 HOH A 67 568 67 HOH HOH . 
F 4 HOH A 68 569 68 HOH HOH . 
F 4 HOH A 69 570 69 HOH HOH . 
F 4 HOH A 70 571 70 HOH HOH . 
F 4 HOH A 71 572 71 HOH HOH . 
F 4 HOH A 72 573 72 HOH HOH . 
F 4 HOH A 73 574 73 HOH HOH . 
F 4 HOH A 74 575 74 HOH HOH . 
F 4 HOH A 75 576 75 HOH HOH . 
F 4 HOH A 76 577 76 HOH HOH . 
F 4 HOH A 77 578 77 HOH HOH . 
F 4 HOH A 78 579 78 HOH HOH . 
F 4 HOH A 79 580 79 HOH HOH . 
F 4 HOH A 80 581 80 HOH HOH . 
F 4 HOH A 81 582 81 HOH HOH . 
F 4 HOH A 82 583 82 HOH HOH . 
F 4 HOH A 83 584 83 HOH HOH . 
F 4 HOH A 84 585 84 HOH HOH . 
F 4 HOH A 85 586 85 HOH HOH . 
F 4 HOH A 86 587 86 HOH HOH . 
F 4 HOH A 87 588 87 HOH HOH . 
F 4 HOH A 88 589 88 HOH HOH . 
F 4 HOH A 89 590 89 HOH HOH . 
F 4 HOH A 90 591 90 HOH HOH . 
F 4 HOH A 91 592 91 HOH HOH . 
F 4 HOH A 92 593 92 HOH HOH . 
F 4 HOH A 93 594 93 HOH HOH . 
F 4 HOH A 94 595 94 HOH HOH . 
F 4 HOH A 95 596 95 HOH HOH . 
F 4 HOH A 96 597 96 HOH HOH . 
F 4 HOH A 97 598 97 HOH HOH . 
F 4 HOH A 98 599 98 HOH HOH . 
F 4 HOH A 99 600 99 HOH HOH . 
F 4 HOH A 100 601 100 HOH HOH . 
F 4 HOH A 101 602 101 HOH HOH . 
F 4 HOH A 102 603 102 HOH HOH . 
F 4 HOH A 103 604 103 HOH HOH . 
F 4 HOH A 104 605 104 HOH HOH . 
F 4 HOH A 105 606 105 HOH HOH . 
F 4 HOH A 106 607 106 HOH HOH . 
F 4 HOH A 107 608 107 HOH HOH . 
F 4 HOH A 108 609 108 HOH HOH . 
F 4 HOH A 109 610 109 HOH HOH . 
F 4 HOH A 110 611 110 HOH HOH . 
F 4 HOH A 111 612 111 HOH HOH . 
F 4 HOH A 112 613 112 HOH HOH . 
F 4 HOH A 113 614 113 HOH HOH . 
F 4 HOH A 114 615 114 HOH HOH . 
F 4 HOH A 115 616 115 HOH HOH . 
F 4 HOH A 116 617 116 HOH HOH . 
F 4 HOH A 117 618 117 HOH HOH . 
F 4 HOH A 118 619 118 HOH HOH . 
F 4 HOH A 119 620 119 HOH HOH . 
F 4 HOH A 120 621 120 HOH HOH . 
F 4 HOH A 121 622 121 HOH HOH . 
F 4 HOH A 122 623 122 HOH HOH . 
F 4 HOH A 123 624 123 HOH HOH . 
F 4 HOH A 124 625 124 HOH HOH . 
F 4 HOH A 125 626 125 HOH HOH . 
F 4 HOH A 126 627 126 HOH HOH . 
F 4 HOH A 127 628 127 HOH HOH . 
F 4 HOH A 128 629 128 HOH HOH . 
F 4 HOH A 129 630 129 HOH HOH . 
F 4 HOH A 130 631 130 HOH HOH . 
F 4 HOH A 131 632 131 HOH HOH . 
F 4 HOH A 132 633 132 HOH HOH . 
F 4 HOH A 133 634 133 HOH HOH . 
F 4 HOH A 134 635 134 HOH HOH . 
F 4 HOH A 135 636 135 HOH HOH . 
F 4 HOH A 136 637 136 HOH HOH . 
F 4 HOH A 137 638 137 HOH HOH . 
F 4 HOH A 138 639 138 HOH HOH . 
F 4 HOH A 139 640 139 HOH HOH . 
F 4 HOH A 140 641 140 HOH HOH . 
F 4 HOH A 141 642 141 HOH HOH . 
F 4 HOH A 142 643 142 HOH HOH . 
F 4 HOH A 143 644 143 HOH HOH . 
F 4 HOH A 144 645 144 HOH HOH . 
F 4 HOH A 145 646 145 HOH HOH . 
F 4 HOH A 146 647 146 HOH HOH . 
F 4 HOH A 147 648 147 HOH HOH . 
F 4 HOH A 148 649 148 HOH HOH . 
F 4 HOH A 149 650 149 HOH HOH . 
F 4 HOH A 150 651 150 HOH HOH . 
F 4 HOH A 151 652 151 HOH HOH . 
F 4 HOH A 152 653 152 HOH HOH . 
F 4 HOH A 153 654 153 HOH HOH . 
F 4 HOH A 154 655 154 HOH HOH . 
F 4 HOH A 155 656 155 HOH HOH . 
F 4 HOH A 156 657 156 HOH HOH . 
F 4 HOH A 157 658 157 HOH HOH . 
F 4 HOH A 158 659 158 HOH HOH . 
F 4 HOH A 159 660 159 HOH HOH . 
F 4 HOH A 160 661 160 HOH HOH . 
F 4 HOH A 161 662 161 HOH HOH . 
F 4 HOH A 162 663 162 HOH HOH . 
F 4 HOH A 163 664 163 HOH HOH . 
F 4 HOH A 164 665 164 HOH HOH . 
F 4 HOH A 165 666 165 HOH HOH . 
F 4 HOH A 166 667 166 HOH HOH . 
F 4 HOH A 167 668 167 HOH HOH . 
F 4 HOH A 168 669 168 HOH HOH . 
F 4 HOH A 169 670 169 HOH HOH . 
F 4 HOH A 170 671 170 HOH HOH . 
F 4 HOH A 171 672 171 HOH HOH . 
F 4 HOH A 172 673 172 HOH HOH . 
F 4 HOH A 173 674 173 HOH HOH . 
F 4 HOH A 174 675 174 HOH HOH . 
F 4 HOH A 175 676 175 HOH HOH . 
F 4 HOH A 176 677 176 HOH HOH . 
F 4 HOH A 177 678 177 HOH HOH . 
F 4 HOH A 178 679 178 HOH HOH . 
F 4 HOH A 179 680 179 HOH HOH . 
F 4 HOH A 180 681 180 HOH HOH . 
F 4 HOH A 181 682 181 HOH HOH . 
F 4 HOH A 182 683 182 HOH HOH . 
F 4 HOH A 183 684 183 HOH HOH . 
F 4 HOH A 184 685 184 HOH HOH . 
F 4 HOH A 185 686 185 HOH HOH . 
F 4 HOH A 186 687 186 HOH HOH . 
F 4 HOH A 187 688 187 HOH HOH . 
F 4 HOH A 188 689 188 HOH HOH . 
F 4 HOH A 189 690 189 HOH HOH . 
F 4 HOH A 190 691 190 HOH HOH . 
F 4 HOH A 191 692 191 HOH HOH . 
F 4 HOH A 192 693 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MYC . . . E 3 76.176 33.073 -1.502 1 25.31 ? C1 MYC 501 A 1 
HETATM 2 C C2 MYC . . . E 3 75.695 34.164 -2.214 1 25.32 ? C2 MYC 501 A 1 
HETATM 3 C C3 MYC . . . E 3 75.511 35.425 -1.493 1 24.28 ? C3 MYC 501 A 1 
HETATM 4 C C4 MYC . . . E 3 75.819 35.48 -0.067 1 24.58 ? C4 MYC 501 A 1 
HETATM 5 C C5 MYC . . . E 3 76.28 34.354 0.573 1 25.08 ? C5 MYC 501 A 1 
HETATM 6 C C6 MYC . . . E 3 76.442 33.169 -0.135 1 25.34 ? C6 MYC 501 A 1 
HETATM 7 C C9 MYC . . . E 3 75.016 36.639 -2.164 1 24.93 ? C9 MYC 501 A 1 
HETATM 8 C C10 MYC . . . E 3 74.86 37.844 -1.371 1 25.51 ? C10 MYC 501 A 1 
HETATM 9 C C11 MYC . . . E 3 75.136 37.838 -0.059 1 25.85 ? C11 MYC 501 A 1 
HETATM 10 C C14 MYC . . . E 3 75.012 39.028 0.859 1 28.27 ? C14 MYC 501 A 1 
HETATM 11 C C15 MYC . . . E 3 74.523 40.273 0.435 1 27.96 ? C15 MYC 501 A 1 
HETATM 12 C C16 MYC . . . E 3 74.447 41.348 1.325 1 29.94 ? C16 MYC 501 A 1 
HETATM 13 C C17 MYC . . . E 3 74.885 41.175 2.719 1 30.32 ? C17 MYC 501 A 1 
HETATM 14 C C18 MYC . . . E 3 75.383 39.84 3.133 1 30.32 ? C18 MYC 501 A 1 
HETATM 15 C C19 MYC . . . E 3 75.418 38.817 2.192 1 28.8 ? C19 MYC 501 A 1 
HETATM 16 O O12 MYC . . . E 3 75.631 36.641 0.602 1 27.22 ? O12 MYC 501 A 1 
HETATM 17 O O13 MYC . . . E 3 74.769 36.622 -3.36 1 25.42 ? O13 MYC 501 A 1 
HETATM 18 O O23 MYC . . . E 3 75.785 39.649 4.388 1 30.46 ? O23 MYC 501 A 1 
HETATM 19 O O24 MYC . . . E 3 74.813 42.192 3.576 1 30.92 ? O24 MYC 501 A 1 
HETATM 20 O O25 MYC . . . E 3 73.994 42.547 0.96 1 32.02 ? O25 MYC 501 A 1 
HETATM 21 O O27 MYC . . . E 3 74.41 38.918 -2.01 1 26.76 ? O27 MYC 501 A 1 
HETATM 22 O O29 MYC . . . E 3 76.896 32.109 0.529 1 28.9 ? O29 MYC 501 A 1 
HETATM 23 O O30 MYC . . . E 3 75.413 34.107 -3.516 1 26.03 ? O30 MYC 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#