data_2O65 # _model_server_result.job_id PGk8Y0fakfdXvh2TU4-SYA _model_server_result.datetime_utc '2024-11-05 00:24:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2O65 # _exptl.entry_id 2O65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2O65 _cell.length_a 98.652 _cell.length_b 98.652 _cell.length_c 80.472 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id MYF _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-(3,4,5-TRIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-1-BENZOPYRAN-4-ONE;PENTAHYDROXYFLAVONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C7 MYF doub 247 n n C7 C6 MYF sing 248 n y C7 C8 MYF sing 249 n y C6 C1 MYF sing 250 n y C6 C5 MYF doub 251 n y C1 O21 MYF sing 252 n n C1 C2 MYF doub 253 n y O21 HO21 MYF sing 254 n n C2 C3 MYF sing 255 n y C2 H2 MYF sing 256 n n C3 O20 MYF sing 257 n n C3 C4 MYF doub 258 n y O20 HO20 MYF sing 259 n n C5 C4 MYF sing 260 n y C5 O10 MYF sing 261 n y C4 H4 MYF sing 262 n n O10 C9 MYF sing 263 n y C9 C8 MYF doub 264 n y C9 C11 MYF sing 265 n y C8 H8 MYF sing 266 n n C11 C12 MYF doub 267 n y C11 C16 MYF sing 268 n y C12 C13 MYF sing 269 n y C12 H12 MYF sing 270 n n C13 O19 MYF sing 271 n n C13 C14 MYF doub 272 n y O19 HO19 MYF sing 273 n n C14 C15 MYF sing 274 n y C14 O18 MYF sing 275 n n O18 HO18 MYF sing 276 n n C15 C16 MYF doub 277 n y C15 O17 MYF sing 278 n n C16 H16 MYF sing 279 n n O17 HO17 MYF sing 280 n n # _atom_sites.entry_id 2O65 _atom_sites.fract_transf_matrix[1][1] 0.010137 _atom_sites.fract_transf_matrix[1][2] 0.005852 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 401 1 IMD IMD . C 3 MYF A 1 501 1 MYF MYF . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 14 14 HOH HOH . D 4 HOH A 15 15 15 HOH HOH . D 4 HOH A 16 16 16 HOH HOH . D 4 HOH A 17 17 17 HOH HOH . D 4 HOH A 18 18 18 HOH HOH . D 4 HOH A 19 19 19 HOH HOH . D 4 HOH A 20 20 20 HOH HOH . D 4 HOH A 21 21 21 HOH HOH . D 4 HOH A 22 22 22 HOH HOH . D 4 HOH A 23 23 23 HOH HOH . D 4 HOH A 24 24 24 HOH HOH . D 4 HOH A 25 25 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 MYF . . . C 3 75.005 36.157 -2.571 1 41.93 ? O22 MYF 501 A 1 HETATM 2 C C7 MYF . . . C 3 75.312 35.723 -1.482 1 39.99 ? C7 MYF 501 A 1 HETATM 3 C C6 MYF . . . C 3 75.784 34.313 -1.284 1 39.79 ? C6 MYF 501 A 1 HETATM 4 C C1 MYF . . . C 3 75.925 33.287 -2.365 1 40.45 ? C1 MYF 501 A 1 HETATM 5 O O21 MYF . . . C 3 75.635 33.57 -3.634 1 41.52 ? O21 MYF 501 A 1 HETATM 6 C C2 MYF . . . C 3 76.386 32.001 -2.043 1 39.89 ? C2 MYF 501 A 1 HETATM 7 C C3 MYF . . . C 3 76.708 31.664 -0.721 1 39.91 ? C3 MYF 501 A 1 HETATM 8 O O20 MYF . . . C 3 77.132 30.442 -0.421 1 39.9 ? O20 MYF 501 A 1 HETATM 9 C C5 MYF . . . C 3 76.151 33.901 0.094 1 41.58 ? C5 MYF 501 A 1 HETATM 10 C C4 MYF . . . C 3 76.582 32.581 0.325 1 40.95 ? C4 MYF 501 A 1 HETATM 11 O O10 MYF . . . C 3 76.052 34.812 1.13 1 41.85 ? O10 MYF 501 A 1 HETATM 12 C C9 MYF . . . C 3 75.607 36.169 0.881 1 43.33 ? C9 MYF 501 A 1 HETATM 13 C C8 MYF . . . C 3 75.228 36.618 -0.329 1 40.14 ? C8 MYF 501 A 1 HETATM 14 C C11 MYF . . . C 3 75.462 37.019 2.078 1 49.2 ? C11 MYF 501 A 1 HETATM 15 C C12 MYF . . . C 3 75.292 38.397 1.926 1 52.92 ? C12 MYF 501 A 1 HETATM 16 C C13 MYF . . . C 3 75.092 39.213 3.038 1 55.74 ? C13 MYF 501 A 1 HETATM 17 O O19 MYF . . . C 3 74.969 40.525 2.832 1 56.5 ? O19 MYF 501 A 1 HETATM 18 C C14 MYF . . . C 3 75.026 38.597 4.406 1 56.24 ? C14 MYF 501 A 1 HETATM 19 O O18 MYF . . . C 3 74.833 39.372 5.476 1 57.19 ? O18 MYF 501 A 1 HETATM 20 C C15 MYF . . . C 3 75.168 37.102 4.514 1 55.54 ? C15 MYF 501 A 1 HETATM 21 C C16 MYF . . . C 3 75.374 36.374 3.327 1 52.24 ? C16 MYF 501 A 1 HETATM 22 O O17 MYF . . . C 3 75.091 36.474 5.704 1 56.21 ? O17 MYF 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #