data_2O67 # _model_server_result.job_id b6ZmGTaCcooRHnQ2Vm1NBw _model_server_result.datetime_utc '2025-01-13 05:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":136}' # _entry.id 2O67 # _exptl.entry_id 2O67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.41 _cell.angle_gamma 90 _cell.entry_id 2O67 _cell.length_a 92.594 _cell.length_b 66.726 _cell.length_c 61.489 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 224 n n C1 C3 MLI sing 225 n n C1 H11 MLI sing 226 n n C1 H12 MLI sing 227 n n C2 O6 MLI doub 228 n n C2 O7 MLI sing 229 n n C3 O8 MLI doub 230 n n C3 O9 MLI sing 231 n n # _atom_sites.entry_id 2O67 _atom_sites.fract_transf_matrix[1][1] 0.0108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005842 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MLI B 1 135 101 MLI MLI . E 2 MLI B 1 136 102 MLI MLI . F 2 MLI C 1 135 103 MLI MLI . G 3 HOH A 1 135 1 HOH HOH . G 3 HOH A 2 136 2 HOH HOH . G 3 HOH A 3 137 3 HOH HOH . G 3 HOH A 4 138 5 HOH HOH . G 3 HOH A 5 139 6 HOH HOH . G 3 HOH A 6 140 7 HOH HOH . G 3 HOH A 7 141 8 HOH HOH . G 3 HOH A 8 142 9 HOH HOH . G 3 HOH A 9 143 10 HOH HOH . G 3 HOH A 10 144 11 HOH HOH . G 3 HOH A 11 145 18 HOH HOH . G 3 HOH A 12 146 19 HOH HOH . G 3 HOH A 13 147 25 HOH HOH . G 3 HOH A 14 148 26 HOH HOH . G 3 HOH A 15 149 27 HOH HOH . G 3 HOH A 16 150 28 HOH HOH . H 3 HOH B 1 137 4 HOH HOH . H 3 HOH B 2 138 14 HOH HOH . H 3 HOH B 3 139 15 HOH HOH . H 3 HOH B 4 140 16 HOH HOH . H 3 HOH B 5 141 17 HOH HOH . H 3 HOH B 6 142 23 HOH HOH . H 3 HOH B 7 143 24 HOH HOH . I 3 HOH C 1 136 12 HOH HOH . I 3 HOH C 2 137 13 HOH HOH . I 3 HOH C 3 138 20 HOH HOH . I 3 HOH C 4 139 21 HOH HOH . I 3 HOH C 5 140 22 HOH HOH . I 3 HOH C 6 141 29 HOH HOH . I 3 HOH C 7 142 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 2 13.077 47.369 6.003 1 73.17 ? C1 MLI 136 B 1 HETATM 2 C C2 MLI . . . E 2 13.099 45.853 5.979 1 70.72 ? C2 MLI 136 B 1 HETATM 3 C C3 MLI . . . E 2 14.466 47.928 5.775 1 72.28 ? C3 MLI 136 B 1 HETATM 4 O O6 MLI . . . E 2 12.111 45.245 5.512 1 67.38 ? O6 MLI 136 B 1 HETATM 5 O O7 MLI . . . E 2 14.1 45.254 6.43 1 70.17 ? O7 MLI 136 B 1 HETATM 6 O O8 MLI . . . E 2 15.028 48.519 6.721 1 72.74 ? O8 MLI 136 B 1 HETATM 7 O O9 MLI . . . E 2 15.007 47.779 4.656 1 70.86 ? O9 MLI 136 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 967 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 7 #