data_2O6P # _model_server_result.job_id HH-qvwVuL9VL_g227T3nmg _model_server_result.datetime_utc '2025-06-28 10:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1006}' # _entry.id 2O6P # _exptl.entry_id 2O6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O6P _cell.length_a 47.489 _cell.length_b 70.441 _cell.length_c 88.685 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,M 1 1 B,G,H,I,J,K,L,N 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1 A,C,D,E,F,M 4 1 B,G,H,I,J,K,L,N 4 2 A,C,D,E,F,M 5 1 B,G,H,I,J,K,L,N 5 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y+1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 35.2205 -44.3425 3 'crystal symmetry operation' 4_435 x-1/2,-y-3/2,-z 1 0 0 0 -1 0 0 0 -1 -23.7445 -105.6615 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 1 A GLY 28 1_645 I ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A O GLY 1 A GLY 28 1_645 I ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc3 A OD1 ASN 15 A ASN 42 4_535 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc4 A NE2 HIS 47 A HIS 74 3_544 J ZN ZN . B ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc5 A NE2 HIS 49 A HIS 76 3_544 I ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 A OD2 ASP 87 A ASP 114 4_535 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc7 A OE1 GLU 96 A GLU 123 3_544 I ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc8 A OH TYR 105 A TYR 132 1_555 F FE HEM . A HEM 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc9 A OD1 ASP 106 A ASP 133 1_555 D ZN ZN . A ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc10 A ND1 HIS 107 A HIS 134 1_555 C ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc11 A NE2 HIS 108 A HIS 135 1_555 D ZN ZN . A ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc12 F O1A HEM . A HEM 190 1_555 H ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc13 C ZN ZN . A ZN 1004 1_555 M O HOH . A HOH 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc14 C ZN ZN . A ZN 1004 1_555 M O HOH . A HOH 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc15 C ZN ZN . A ZN 1004 1_555 L O1A HEM . B HEM 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc16 D ZN ZN . A ZN 1006 1_555 M O HOH . A HOH 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc17 B O GLY 1 B GLY 28 1_555 I ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc18 B N GLY 1 B GLY 28 1_555 I ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc19 B NZ LYS 31 B LYS 58 1_555 J ZN ZN . B ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc20 B OH TYR 105 B TYR 132 1_555 L FE HEM . B HEM 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc21 B OD1 ASP 106 B ASP 133 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc22 B NE2 HIS 107 B HIS 134 1_555 H ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc23 B NE2 HIS 108 B HIS 135 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc24 H ZN ZN . B ZN 1003 1_555 N O HOH . B HOH 1051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc25 H ZN ZN . B ZN 1003 1_555 N O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc26 J ZN ZN . B ZN 1005 1_555 N O HOH . B HOH 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc27 J ZN ZN . B ZN 1005 1_555 N O HOH . B HOH 1098 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.359 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2O6P _atom_sites.fract_transf_matrix[1][1] 0.021057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1004 1004 ZN ZN . D 2 ZN A 1 1006 1006 ZN ZN . E 3 CL A 1 1007 1007 CL CL . F 4 HEM A 1 190 190 HEM HEM . G 2 ZN B 1 1001 1001 ZN ZN . H 2 ZN B 1 1003 1003 ZN ZN . I 2 ZN B 1 1002 1002 ZN ZN . J 2 ZN B 1 1005 1005 ZN ZN . K 3 CL B 1 1008 1008 CL CL . L 4 HEM B 1 190 190 HEM HEM . M 5 HOH A 1 1008 1 HOH HOH . M 5 HOH A 2 1009 3 HOH HOH . M 5 HOH A 3 1010 9 HOH HOH . M 5 HOH A 4 1011 10 HOH HOH . M 5 HOH A 5 1012 11 HOH HOH . M 5 HOH A 6 1013 12 HOH HOH . M 5 HOH A 7 1014 13 HOH HOH . M 5 HOH A 8 1015 16 HOH HOH . M 5 HOH A 9 1016 17 HOH HOH . M 5 HOH A 10 1017 18 HOH HOH . M 5 HOH A 11 1018 24 HOH HOH . M 5 HOH A 12 1019 28 HOH HOH . M 5 HOH A 13 1020 30 HOH HOH . M 5 HOH A 14 1021 31 HOH HOH . M 5 HOH A 15 1022 32 HOH HOH . M 5 HOH A 16 1023 33 HOH HOH . M 5 HOH A 17 1024 34 HOH HOH . M 5 HOH A 18 1025 36 HOH HOH . M 5 HOH A 19 1026 38 HOH HOH . M 5 HOH A 20 1027 39 HOH HOH . M 5 HOH A 21 1028 40 HOH HOH . M 5 HOH A 22 1029 43 HOH HOH . M 5 HOH A 23 1030 44 HOH HOH . M 5 HOH A 24 1031 45 HOH HOH . M 5 HOH A 25 1032 49 HOH HOH . M 5 HOH A 26 1033 51 HOH HOH . M 5 HOH A 27 1034 52 HOH HOH . M 5 HOH A 28 1035 53 HOH HOH . M 5 HOH A 29 1036 54 HOH HOH . M 5 HOH A 30 1037 55 HOH HOH . M 5 HOH A 31 1038 57 HOH HOH . M 5 HOH A 32 1039 60 HOH HOH . M 5 HOH A 33 1040 62 HOH HOH . M 5 HOH A 34 1041 65 HOH HOH . M 5 HOH A 35 1042 68 HOH HOH . M 5 HOH A 36 1043 69 HOH HOH . M 5 HOH A 37 1044 72 HOH HOH . M 5 HOH A 38 1045 75 HOH HOH . M 5 HOH A 39 1046 76 HOH HOH . M 5 HOH A 40 1047 78 HOH HOH . M 5 HOH A 41 1048 81 HOH HOH . M 5 HOH A 42 1049 84 HOH HOH . M 5 HOH A 43 1050 86 HOH HOH . M 5 HOH A 44 1051 87 HOH HOH . M 5 HOH A 45 1052 90 HOH HOH . M 5 HOH A 46 1053 95 HOH HOH . M 5 HOH A 47 1054 98 HOH HOH . M 5 HOH A 48 1055 101 HOH HOH . M 5 HOH A 49 1056 102 HOH HOH . M 5 HOH A 50 1057 103 HOH HOH . M 5 HOH A 51 1058 104 HOH HOH . M 5 HOH A 52 1059 105 HOH HOH . M 5 HOH A 53 1060 106 HOH HOH . M 5 HOH A 54 1061 107 HOH HOH . M 5 HOH A 55 1062 108 HOH HOH . M 5 HOH A 56 1063 114 HOH HOH . M 5 HOH A 57 1064 116 HOH HOH . M 5 HOH A 58 1065 117 HOH HOH . M 5 HOH A 59 1066 119 HOH HOH . M 5 HOH A 60 1067 121 HOH HOH . M 5 HOH A 61 1068 122 HOH HOH . M 5 HOH A 62 1069 123 HOH HOH . M 5 HOH A 63 1070 124 HOH HOH . M 5 HOH A 64 1071 125 HOH HOH . M 5 HOH A 65 1072 130 HOH HOH . M 5 HOH A 66 1073 131 HOH HOH . M 5 HOH A 67 1074 132 HOH HOH . M 5 HOH A 68 1075 133 HOH HOH . M 5 HOH A 69 1076 134 HOH HOH . M 5 HOH A 70 1077 135 HOH HOH . M 5 HOH A 71 1078 136 HOH HOH . M 5 HOH A 72 1079 137 HOH HOH . M 5 HOH A 73 1080 138 HOH HOH . M 5 HOH A 74 1081 140 HOH HOH . M 5 HOH A 75 1082 157 HOH HOH . M 5 HOH A 76 1083 159 HOH HOH . M 5 HOH A 77 1084 160 HOH HOH . M 5 HOH A 78 1085 161 HOH HOH . M 5 HOH A 79 1086 165 HOH HOH . M 5 HOH A 80 1087 166 HOH HOH . M 5 HOH A 81 1088 168 HOH HOH . M 5 HOH A 82 1089 169 HOH HOH . M 5 HOH A 83 1090 170 HOH HOH . M 5 HOH A 84 1091 171 HOH HOH . M 5 HOH A 85 1092 177 HOH HOH . M 5 HOH A 86 1093 178 HOH HOH . M 5 HOH A 87 1094 181 HOH HOH . M 5 HOH A 88 1095 182 HOH HOH . M 5 HOH A 89 1096 126 HOH HOH . M 5 HOH A 90 1097 129 HOH HOH . M 5 HOH A 91 1098 151 HOH HOH . N 5 HOH B 1 1009 2 HOH HOH . N 5 HOH B 2 1010 4 HOH HOH . N 5 HOH B 3 1011 5 HOH HOH . N 5 HOH B 4 1012 6 HOH HOH . N 5 HOH B 5 1013 7 HOH HOH . N 5 HOH B 6 1014 8 HOH HOH . N 5 HOH B 7 1015 14 HOH HOH . N 5 HOH B 8 1016 15 HOH HOH . N 5 HOH B 9 1017 19 HOH HOH . N 5 HOH B 10 1018 20 HOH HOH . N 5 HOH B 11 1019 21 HOH HOH . N 5 HOH B 12 1020 22 HOH HOH . N 5 HOH B 13 1021 23 HOH HOH . N 5 HOH B 14 1022 25 HOH HOH . N 5 HOH B 15 1023 26 HOH HOH . N 5 HOH B 16 1024 27 HOH HOH . N 5 HOH B 17 1025 29 HOH HOH . N 5 HOH B 18 1026 35 HOH HOH . N 5 HOH B 19 1027 37 HOH HOH . N 5 HOH B 20 1028 41 HOH HOH . N 5 HOH B 21 1029 42 HOH HOH . N 5 HOH B 22 1030 46 HOH HOH . N 5 HOH B 23 1031 47 HOH HOH . N 5 HOH B 24 1032 48 HOH HOH . N 5 HOH B 25 1033 50 HOH HOH . N 5 HOH B 26 1034 56 HOH HOH . N 5 HOH B 27 1035 58 HOH HOH . N 5 HOH B 28 1036 59 HOH HOH . N 5 HOH B 29 1037 61 HOH HOH . N 5 HOH B 30 1038 63 HOH HOH . N 5 HOH B 31 1039 64 HOH HOH . N 5 HOH B 32 1040 66 HOH HOH . N 5 HOH B 33 1041 67 HOH HOH . N 5 HOH B 34 1042 70 HOH HOH . N 5 HOH B 35 1043 71 HOH HOH . N 5 HOH B 36 1044 73 HOH HOH . N 5 HOH B 37 1045 74 HOH HOH . N 5 HOH B 38 1046 77 HOH HOH . N 5 HOH B 39 1047 79 HOH HOH . N 5 HOH B 40 1048 80 HOH HOH . N 5 HOH B 41 1049 82 HOH HOH . N 5 HOH B 42 1050 83 HOH HOH . N 5 HOH B 43 1051 85 HOH HOH . N 5 HOH B 44 1052 88 HOH HOH . N 5 HOH B 45 1053 89 HOH HOH . N 5 HOH B 46 1054 91 HOH HOH . N 5 HOH B 47 1055 92 HOH HOH . N 5 HOH B 48 1056 93 HOH HOH . N 5 HOH B 49 1057 94 HOH HOH . N 5 HOH B 50 1058 96 HOH HOH . N 5 HOH B 51 1059 97 HOH HOH . N 5 HOH B 52 1060 99 HOH HOH . N 5 HOH B 53 1061 100 HOH HOH . N 5 HOH B 54 1062 109 HOH HOH . N 5 HOH B 55 1063 110 HOH HOH . N 5 HOH B 56 1064 111 HOH HOH . N 5 HOH B 57 1065 112 HOH HOH . N 5 HOH B 58 1066 113 HOH HOH . N 5 HOH B 59 1067 115 HOH HOH . N 5 HOH B 60 1068 118 HOH HOH . N 5 HOH B 61 1069 120 HOH HOH . N 5 HOH B 62 1070 127 HOH HOH . N 5 HOH B 63 1071 128 HOH HOH . N 5 HOH B 64 1072 139 HOH HOH . N 5 HOH B 65 1073 141 HOH HOH . N 5 HOH B 66 1074 142 HOH HOH . N 5 HOH B 67 1075 143 HOH HOH . N 5 HOH B 68 1076 144 HOH HOH . N 5 HOH B 69 1077 145 HOH HOH . N 5 HOH B 70 1078 146 HOH HOH . N 5 HOH B 71 1079 147 HOH HOH . N 5 HOH B 72 1080 148 HOH HOH . N 5 HOH B 73 1081 149 HOH HOH . N 5 HOH B 74 1082 150 HOH HOH . N 5 HOH B 75 1083 152 HOH HOH . N 5 HOH B 76 1084 153 HOH HOH . N 5 HOH B 77 1085 154 HOH HOH . N 5 HOH B 78 1086 155 HOH HOH . N 5 HOH B 79 1087 156 HOH HOH . N 5 HOH B 80 1088 158 HOH HOH . N 5 HOH B 81 1089 162 HOH HOH . N 5 HOH B 82 1090 163 HOH HOH . N 5 HOH B 83 1091 164 HOH HOH . N 5 HOH B 84 1092 167 HOH HOH . N 5 HOH B 85 1093 172 HOH HOH . N 5 HOH B 86 1094 173 HOH HOH . N 5 HOH B 87 1095 174 HOH HOH . N 5 HOH B 88 1096 175 HOH HOH . N 5 HOH B 89 1097 176 HOH HOH . N 5 HOH B 90 1098 179 HOH HOH . N 5 HOH B 91 1099 180 HOH HOH . N 5 HOH B 92 1100 183 HOH HOH . N 5 HOH B 93 1101 184 HOH HOH . N 5 HOH B 94 1102 185 HOH HOH . N 5 HOH B 95 1103 186 HOH HOH . N 5 HOH B 96 1104 187 HOH HOH . N 5 HOH B 97 1105 188 HOH HOH . N 5 HOH B 98 1106 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.813 _atom_site.Cartn_y -63.826 _atom_site.Cartn_z -13.369 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 40.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1006 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #