data_2O7O # _model_server_result.job_id -CLYdpgtvEYAsUOMwyHcsw _model_server_result.datetime_utc '2024-11-24 06:02:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":222}' # _entry.id 2O7O # _exptl.entry_id 2O7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.435 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O7O _cell.length_a 65.83 _cell.length_b 65.83 _cell.length_c 179.502 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 65.83 65.83 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 100 1_555 B MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 F O12 DXT . A DXT 222 1_555 B MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc3 F O11 DXT . A DXT 222 1_555 B MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 B MG MG . A MG 223 1_555 G O HOH . A HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc5 B MG MG . A MG 223 1_555 G O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc6 B MG MG . A MG 223 1_555 G O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C22 H24 N2 O8' _chem_comp.formula_weight 444.435 _chem_comp.id DXT _chem_comp.mon_nstd_flag . _chem_comp.name (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOXYTETRACYCLINE;DOXYCYCLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4B DXT sing 70 n n C1 O1 DXT doub 71 n n C1 C2 DXT sing 72 n n C2 C21 DXT sing 73 n n C2 C3 DXT doub 74 n n O21 C21 DXT doub 75 n n C21 N21 DXT sing 76 n n N21 H211 DXT sing 77 n n N21 H212 DXT sing 78 n n C3 O3 DXT sing 79 n n C3 C4 DXT sing 80 n n O3 HO3 DXT sing 81 n n C4 H4 DXT sing 82 n n C4 N4 DXT sing 83 n n C4 C4A DXT sing 84 n n N4 C41 DXT sing 85 n n N4 C42 DXT sing 86 n n C41 H411 DXT sing 87 n n C41 H412 DXT sing 88 n n C41 H413 DXT sing 89 n n C42 H421 DXT sing 90 n n C42 H422 DXT sing 91 n n C42 H423 DXT sing 92 n n C4A C4B DXT sing 93 n n C4A H4A DXT sing 94 n n C4A C5 DXT sing 95 n n C5 H5 DXT sing 96 n n C5 O5 DXT sing 97 n n C5 C5A DXT sing 98 n n O5 HO5 DXT sing 99 n n C5A C5B DXT sing 100 n n C5A H5A DXT sing 101 n n C5A C6 DXT sing 102 n n C6 H6 DXT sing 103 n n C6 C6A DXT sing 104 n n C6 C61 DXT sing 105 n n C61 H611 DXT sing 106 n n C61 H612 DXT sing 107 n n C61 H613 DXT sing 108 n n C6A C6B DXT sing 109 n y C6A C7 DXT doub 110 n y C7 H7 DXT sing 111 n n C7 C8 DXT sing 112 n y C8 H8 DXT sing 113 n n C8 C9 DXT doub 114 n y C9 C10 DXT sing 115 n y C9 H9 DXT sing 116 n n C10 O10 DXT sing 117 n n C10 C6B DXT doub 118 n y O10 H10 DXT sing 119 n n C6B C11 DXT sing 120 n n C11 O11 DXT doub 121 n n C11 C5B DXT sing 122 n n C5B C12 DXT doub 123 n n C12 O12 DXT sing 124 n n C12 C4B DXT sing 125 n n O12 H12 DXT sing 126 n n C4B O13 DXT sing 127 n n O13 H13 DXT sing 128 n n # _atom_sites.entry_id 2O7O _atom_sites.fract_transf_matrix[1][1] 0.015191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 223 223 MG MG . C 3 SO4 A 1 301 301 SO4 SO4 . D 4 CL A 1 302 302 CL CL . E 4 CL A 1 303 303 CL CL . F 5 DXT A 1 222 222 DXT DTC . G 6 HOH A 1 224 224 HOH HOH . G 6 HOH A 2 225 225 HOH HOH . G 6 HOH A 3 226 226 HOH HOH . G 6 HOH A 4 304 304 HOH HOH . G 6 HOH A 5 305 305 HOH HOH . G 6 HOH A 6 306 306 HOH HOH . G 6 HOH A 7 307 307 HOH HOH . G 6 HOH A 8 308 308 HOH HOH . G 6 HOH A 9 309 309 HOH HOH . G 6 HOH A 10 310 310 HOH HOH . G 6 HOH A 11 311 311 HOH HOH . G 6 HOH A 12 312 312 HOH HOH . G 6 HOH A 13 313 313 HOH HOH . G 6 HOH A 14 314 314 HOH HOH . G 6 HOH A 15 315 315 HOH HOH . G 6 HOH A 16 316 316 HOH HOH . G 6 HOH A 17 317 317 HOH HOH . G 6 HOH A 18 318 318 HOH HOH . G 6 HOH A 19 319 319 HOH HOH . G 6 HOH A 20 320 320 HOH HOH . G 6 HOH A 21 321 321 HOH HOH . G 6 HOH A 22 322 322 HOH HOH . G 6 HOH A 23 323 323 HOH HOH . G 6 HOH A 24 324 324 HOH HOH . G 6 HOH A 25 325 325 HOH HOH . G 6 HOH A 26 326 326 HOH HOH . G 6 HOH A 27 327 327 HOH HOH . G 6 HOH A 28 328 328 HOH HOH . G 6 HOH A 29 329 329 HOH HOH . G 6 HOH A 30 330 330 HOH HOH . G 6 HOH A 31 331 331 HOH HOH . G 6 HOH A 32 332 332 HOH HOH . G 6 HOH A 33 333 333 HOH HOH . G 6 HOH A 34 334 334 HOH HOH . G 6 HOH A 35 335 335 HOH HOH . G 6 HOH A 36 336 336 HOH HOH . G 6 HOH A 37 337 337 HOH HOH . G 6 HOH A 38 338 338 HOH HOH . G 6 HOH A 39 339 339 HOH HOH . G 6 HOH A 40 340 340 HOH HOH . G 6 HOH A 41 341 341 HOH HOH . G 6 HOH A 42 342 342 HOH HOH . G 6 HOH A 43 343 343 HOH HOH . G 6 HOH A 44 344 344 HOH HOH . G 6 HOH A 45 345 345 HOH HOH . G 6 HOH A 46 346 346 HOH HOH . G 6 HOH A 47 347 347 HOH HOH . G 6 HOH A 48 348 348 HOH HOH . G 6 HOH A 49 349 349 HOH HOH . G 6 HOH A 50 350 350 HOH HOH . G 6 HOH A 51 352 352 HOH HOH . G 6 HOH A 52 353 353 HOH HOH . G 6 HOH A 53 354 354 HOH HOH . G 6 HOH A 54 355 355 HOH HOH . G 6 HOH A 55 356 356 HOH HOH . G 6 HOH A 56 357 357 HOH HOH . G 6 HOH A 57 358 358 HOH HOH . G 6 HOH A 58 359 359 HOH HOH . G 6 HOH A 59 360 360 HOH HOH . G 6 HOH A 60 361 361 HOH HOH . G 6 HOH A 61 362 362 HOH HOH . G 6 HOH A 62 363 363 HOH HOH . G 6 HOH A 63 364 364 HOH HOH . G 6 HOH A 64 365 365 HOH HOH . G 6 HOH A 65 366 366 HOH HOH . G 6 HOH A 66 367 367 HOH HOH . G 6 HOH A 67 368 368 HOH HOH . G 6 HOH A 68 369 369 HOH HOH . G 6 HOH A 69 370 370 HOH HOH . G 6 HOH A 70 371 371 HOH HOH . G 6 HOH A 71 372 372 HOH HOH . G 6 HOH A 72 373 373 HOH HOH . G 6 HOH A 73 374 374 HOH HOH . G 6 HOH A 74 375 375 HOH HOH . G 6 HOH A 75 376 376 HOH HOH . G 6 HOH A 76 377 377 HOH HOH . G 6 HOH A 77 378 378 HOH HOH . G 6 HOH A 78 379 379 HOH HOH . G 6 HOH A 79 380 380 HOH HOH . G 6 HOH A 80 381 381 HOH HOH . G 6 HOH A 81 382 382 HOH HOH . G 6 HOH A 82 383 383 HOH HOH . G 6 HOH A 83 384 384 HOH HOH . G 6 HOH A 84 385 385 HOH HOH . G 6 HOH A 85 386 386 HOH HOH . G 6 HOH A 86 387 387 HOH HOH . G 6 HOH A 87 388 388 HOH HOH . G 6 HOH A 88 389 389 HOH HOH . G 6 HOH A 89 390 390 HOH HOH . G 6 HOH A 90 391 391 HOH HOH . G 6 HOH A 91 392 392 HOH HOH . G 6 HOH A 92 393 393 HOH HOH . G 6 HOH A 93 394 394 HOH HOH . G 6 HOH A 94 395 395 HOH HOH . G 6 HOH A 95 396 396 HOH HOH . G 6 HOH A 96 397 397 HOH HOH . G 6 HOH A 97 398 398 HOH HOH . G 6 HOH A 98 399 399 HOH HOH . G 6 HOH A 99 400 400 HOH HOH . G 6 HOH A 100 401 401 HOH HOH . G 6 HOH A 101 402 402 HOH HOH . G 6 HOH A 102 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXT . . . F 5 18.48 32.379 33.691 1 24.85 ? C1 DXT 222 A 1 HETATM 2 O O1 DXT . . . F 5 17.808 32.926 32.754 1 27.2 ? O1 DXT 222 A 1 HETATM 3 C C2 DXT . . . F 5 18.168 31.162 34.333 1 27.41 ? C2 DXT 222 A 1 HETATM 4 O O21 DXT . . . F 5 16.474 29.589 34.773 1 27.53 ? O21 DXT 222 A 1 HETATM 5 C C21 DXT . . . F 5 16.939 30.498 34.026 1 28.06 ? C21 DXT 222 A 1 HETATM 6 N N21 DXT . . . F 5 16.214 30.785 32.944 1 28.61 ? N21 DXT 222 A 1 HETATM 7 C C3 DXT . . . F 5 18.809 30.827 35.464 1 25.88 ? C3 DXT 222 A 1 HETATM 8 O O3 DXT . . . F 5 18.723 29.64 36.046 1 24.91 ? O3 DXT 222 A 1 HETATM 9 C C4 DXT . . . F 5 19.65 31.805 36.291 1 23.3 ? C4 DXT 222 A 1 HETATM 10 N N4 DXT . . . F 5 20.808 31.035 36.953 1 27.4 ? N4 DXT 222 A 1 HETATM 11 C C41 DXT . . . F 5 21.445 31.793 38.109 1 27.79 ? C41 DXT 222 A 1 HETATM 12 C C42 DXT . . . F 5 21.989 30.639 36.081 1 24.54 ? C42 DXT 222 A 1 HETATM 13 C C4A DXT . . . F 5 20.001 33.053 35.516 1 24.68 ? C4A DXT 222 A 1 HETATM 14 C C5 DXT . . . F 5 19.16 34.247 35.961 1 20.65 ? C5 DXT 222 A 1 HETATM 15 O O5 DXT . . . F 5 18.89 34.276 37.322 1 26.78 ? O5 DXT 222 A 1 HETATM 16 C C5A DXT . . . F 5 19.495 35.576 35.335 1 24.38 ? C5A DXT 222 A 1 HETATM 17 C C6 DXT . . . F 5 18.444 36.66 35.469 1 24.05 ? C6 DXT 222 A 1 HETATM 18 C C61 DXT . . . F 5 17.962 36.804 36.897 1 27.97 ? C61 DXT 222 A 1 HETATM 19 C C6A DXT . . . F 5 19.043 37.894 34.911 1 28.9 ? C6A DXT 222 A 1 HETATM 20 C C7 DXT . . . F 5 18.696 39.122 35.412 1 29.59 ? C7 DXT 222 A 1 HETATM 21 C C8 DXT . . . F 5 19.26 40.259 34.873 1 28.39 ? C8 DXT 222 A 1 HETATM 22 C C9 DXT . . . F 5 20.163 40.229 33.831 1 29.03 ? C9 DXT 222 A 1 HETATM 23 C C10 DXT . . . F 5 20.516 39.028 33.293 1 29.53 ? C10 DXT 222 A 1 HETATM 24 O O10 DXT . . . F 5 21.369 38.991 32.283 1 27.6 ? O10 DXT 222 A 1 HETATM 25 C C6B DXT . . . F 5 19.962 37.854 33.869 1 29.19 ? C6B DXT 222 A 1 HETATM 26 C C11 DXT . . . F 5 20.436 36.559 33.333 1 26.62 ? C11 DXT 222 A 1 HETATM 27 O O11 DXT . . . F 5 21.065 36.588 32.24 1 25.92 ? O11 DXT 222 A 1 HETATM 28 C C5B DXT . . . F 5 20.08 35.433 33.958 1 26.41 ? C5B DXT 222 A 1 HETATM 29 C C12 DXT . . . F 5 20.265 34.185 33.356 1 26.45 ? C12 DXT 222 A 1 HETATM 30 O O12 DXT . . . F 5 20.852 34.082 32.228 1 27.3 ? O12 DXT 222 A 1 HETATM 31 C C4B DXT . . . F 5 19.851 32.902 34.024 1 27.21 ? C4B DXT 222 A 1 HETATM 32 O O13 DXT . . . F 5 20.806 31.881 33.574 1 30.13 ? O13 DXT 222 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #