data_2O7Q # _model_server_result.job_id NprFbgonSgnbnUcczVHpyw _model_server_result.datetime_utc '2024-11-02 17:21:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":4733}' # _entry.id 2O7Q # _exptl.entry_id 2O7Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-DEHYDROSHIKIMATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2O7Q _cell.length_a 96.611 _cell.length_b 96.611 _cell.length_c 115.945 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 115.945 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 152 A LYS 241 1_555 E C5 DHK . A DHK 9241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale2 A C GLN 301 A GLN 390 1_555 A N CSO 302 A CSO 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C CSO 302 A CSO 391 1_555 A N CYS 303 A CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C ASP 334 A ASP 423 1_555 A N CSO 335 A CSO 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C CSO 335 A CSO 424 1_555 A N ILE 336 A ILE 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C7 H10 O5' _chem_comp.formula_weight 174.151 _chem_comp.id DHK _chem_comp.mon_nstd_flag . _chem_comp.name 3-DEHYDROSHIKIMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 DHK doub 97 n n C2 C1 DHK sing 98 n n C2 H2 DHK sing 99 n n C3 O3 DHK sing 100 n n C3 C4 DHK sing 101 n n O3 H3 DHK sing 102 n n C4 O4 DHK sing 103 n n C4 C5 DHK sing 104 n n C4 H4 DHK sing 105 n n O4 HA DHK sing 106 n n C5 C6 DHK sing 107 n n C5 O5 DHK sing 108 n n C5 H5 DHK sing 109 n n C1 C6 DHK sing 110 n n C1 C DHK sing 111 n n C1 H1 DHK sing 112 n n C6 H6C1 DHK sing 113 n n C6 H6C2 DHK sing 114 n n C O1 DHK doub 115 n n C O2 DHK sing 116 n n O2 HC DHK sing 117 n n O5 HB DHK sing 118 n n # _atom_sites.entry_id 2O7Q _atom_sites.fract_transf_matrix[1][1] 0.010351 _atom_sites.fract_transf_matrix[1][2] 0.005976 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1403 1403 SO4 SO4 . C 2 SO4 A 1 1402 1402 SO4 SO4 . D 2 SO4 A 1 1401 1401 SO4 SO4 . E 3 DHK A 1 9241 9241 DHK DHK . F 3 DHK A 1 4733 4733 DHK DHK . G 4 HOH A 1 9242 1 HOH HOH . G 4 HOH A 2 9243 2 HOH HOH . G 4 HOH A 3 9244 3 HOH HOH . G 4 HOH A 4 9245 4 HOH HOH . G 4 HOH A 5 9246 5 HOH HOH . G 4 HOH A 6 9247 6 HOH HOH . G 4 HOH A 7 9248 7 HOH HOH . G 4 HOH A 8 9249 8 HOH HOH . G 4 HOH A 9 9250 9 HOH HOH . G 4 HOH A 10 9251 10 HOH HOH . G 4 HOH A 11 9252 11 HOH HOH . G 4 HOH A 12 9253 12 HOH HOH . G 4 HOH A 13 9254 13 HOH HOH . G 4 HOH A 14 9255 14 HOH HOH . G 4 HOH A 15 9256 15 HOH HOH . G 4 HOH A 16 9257 16 HOH HOH . G 4 HOH A 17 9258 17 HOH HOH . G 4 HOH A 18 9259 18 HOH HOH . G 4 HOH A 19 9260 19 HOH HOH . G 4 HOH A 20 9261 20 HOH HOH . G 4 HOH A 21 9262 21 HOH HOH . G 4 HOH A 22 9263 22 HOH HOH . G 4 HOH A 23 9264 23 HOH HOH . G 4 HOH A 24 9265 24 HOH HOH . G 4 HOH A 25 9266 25 HOH HOH . G 4 HOH A 26 9267 26 HOH HOH . G 4 HOH A 27 9268 27 HOH HOH . G 4 HOH A 28 9269 28 HOH HOH . G 4 HOH A 29 9270 29 HOH HOH . G 4 HOH A 30 9271 30 HOH HOH . G 4 HOH A 31 9272 31 HOH HOH . G 4 HOH A 32 9273 32 HOH HOH . G 4 HOH A 33 9274 33 HOH HOH . G 4 HOH A 34 9275 34 HOH HOH . G 4 HOH A 35 9276 35 HOH HOH . G 4 HOH A 36 9277 36 HOH HOH . G 4 HOH A 37 9278 37 HOH HOH . G 4 HOH A 38 9279 38 HOH HOH . G 4 HOH A 39 9280 39 HOH HOH . G 4 HOH A 40 9281 40 HOH HOH . G 4 HOH A 41 9282 41 HOH HOH . G 4 HOH A 42 9283 42 HOH HOH . G 4 HOH A 43 9284 43 HOH HOH . G 4 HOH A 44 9285 44 HOH HOH . G 4 HOH A 45 9286 45 HOH HOH . G 4 HOH A 46 9287 46 HOH HOH . G 4 HOH A 47 9288 47 HOH HOH . G 4 HOH A 48 9289 48 HOH HOH . G 4 HOH A 49 9290 49 HOH HOH . G 4 HOH A 50 9291 50 HOH HOH . G 4 HOH A 51 9292 51 HOH HOH . G 4 HOH A 52 9293 52 HOH HOH . G 4 HOH A 53 9294 53 HOH HOH . G 4 HOH A 54 9295 54 HOH HOH . G 4 HOH A 55 9296 55 HOH HOH . G 4 HOH A 56 9297 56 HOH HOH . G 4 HOH A 57 9298 57 HOH HOH . G 4 HOH A 58 9299 58 HOH HOH . G 4 HOH A 59 9300 59 HOH HOH . G 4 HOH A 60 9301 60 HOH HOH . G 4 HOH A 61 9302 61 HOH HOH . G 4 HOH A 62 9303 62 HOH HOH . G 4 HOH A 63 9304 63 HOH HOH . G 4 HOH A 64 9305 64 HOH HOH . G 4 HOH A 65 9306 65 HOH HOH . G 4 HOH A 66 9307 66 HOH HOH . G 4 HOH A 67 9308 67 HOH HOH . G 4 HOH A 68 9309 68 HOH HOH . G 4 HOH A 69 9310 69 HOH HOH . G 4 HOH A 70 9311 70 HOH HOH . G 4 HOH A 71 9312 71 HOH HOH . G 4 HOH A 72 9313 72 HOH HOH . G 4 HOH A 73 9314 73 HOH HOH . G 4 HOH A 74 9315 74 HOH HOH . G 4 HOH A 75 9316 75 HOH HOH . G 4 HOH A 76 9317 76 HOH HOH . G 4 HOH A 77 9318 77 HOH HOH . G 4 HOH A 78 9319 78 HOH HOH . G 4 HOH A 79 9320 79 HOH HOH . G 4 HOH A 80 9321 80 HOH HOH . G 4 HOH A 81 9322 81 HOH HOH . G 4 HOH A 82 9323 82 HOH HOH . G 4 HOH A 83 9324 83 HOH HOH . G 4 HOH A 84 9325 84 HOH HOH . G 4 HOH A 85 9326 85 HOH HOH . G 4 HOH A 86 9327 86 HOH HOH . G 4 HOH A 87 9328 87 HOH HOH . G 4 HOH A 88 9329 88 HOH HOH . G 4 HOH A 89 9330 89 HOH HOH . G 4 HOH A 90 9331 90 HOH HOH . G 4 HOH A 91 9332 91 HOH HOH . G 4 HOH A 92 9333 92 HOH HOH . G 4 HOH A 93 9334 93 HOH HOH . G 4 HOH A 94 9335 94 HOH HOH . G 4 HOH A 95 9336 95 HOH HOH . G 4 HOH A 96 9337 96 HOH HOH . G 4 HOH A 97 9338 97 HOH HOH . G 4 HOH A 98 9339 98 HOH HOH . G 4 HOH A 99 9340 99 HOH HOH . G 4 HOH A 100 9341 100 HOH HOH . G 4 HOH A 101 9342 101 HOH HOH . G 4 HOH A 102 9343 102 HOH HOH . G 4 HOH A 103 9344 103 HOH HOH . G 4 HOH A 104 9345 104 HOH HOH . G 4 HOH A 105 9346 105 HOH HOH . G 4 HOH A 106 9347 106 HOH HOH . G 4 HOH A 107 9348 107 HOH HOH . G 4 HOH A 108 9349 108 HOH HOH . G 4 HOH A 109 9350 109 HOH HOH . G 4 HOH A 110 9351 110 HOH HOH . G 4 HOH A 111 9352 111 HOH HOH . G 4 HOH A 112 9353 112 HOH HOH . G 4 HOH A 113 9354 113 HOH HOH . G 4 HOH A 114 9355 114 HOH HOH . G 4 HOH A 115 9356 115 HOH HOH . G 4 HOH A 116 9357 116 HOH HOH . G 4 HOH A 117 9358 117 HOH HOH . G 4 HOH A 118 9359 118 HOH HOH . G 4 HOH A 119 9360 119 HOH HOH . G 4 HOH A 120 9361 120 HOH HOH . G 4 HOH A 121 9362 121 HOH HOH . G 4 HOH A 122 9363 122 HOH HOH . G 4 HOH A 123 9364 123 HOH HOH . G 4 HOH A 124 9365 124 HOH HOH . G 4 HOH A 125 9366 125 HOH HOH . G 4 HOH A 126 9367 126 HOH HOH . G 4 HOH A 127 9368 127 HOH HOH . G 4 HOH A 128 9369 128 HOH HOH . G 4 HOH A 129 9370 129 HOH HOH . G 4 HOH A 130 9371 130 HOH HOH . G 4 HOH A 131 9372 131 HOH HOH . G 4 HOH A 132 9373 132 HOH HOH . G 4 HOH A 133 9374 133 HOH HOH . G 4 HOH A 134 9375 134 HOH HOH . G 4 HOH A 135 9376 135 HOH HOH . G 4 HOH A 136 9377 136 HOH HOH . G 4 HOH A 137 9378 137 HOH HOH . G 4 HOH A 138 9379 138 HOH HOH . G 4 HOH A 139 9380 139 HOH HOH . G 4 HOH A 140 9381 140 HOH HOH . G 4 HOH A 141 9382 141 HOH HOH . G 4 HOH A 142 9383 142 HOH HOH . G 4 HOH A 143 9384 143 HOH HOH . G 4 HOH A 144 9385 144 HOH HOH . G 4 HOH A 145 9386 145 HOH HOH . G 4 HOH A 146 9387 146 HOH HOH . G 4 HOH A 147 9388 147 HOH HOH . G 4 HOH A 148 9389 148 HOH HOH . G 4 HOH A 149 9390 149 HOH HOH . G 4 HOH A 150 9391 150 HOH HOH . G 4 HOH A 151 9392 151 HOH HOH . G 4 HOH A 152 9393 152 HOH HOH . G 4 HOH A 153 9394 153 HOH HOH . G 4 HOH A 154 9395 154 HOH HOH . G 4 HOH A 155 9396 155 HOH HOH . G 4 HOH A 156 9397 156 HOH HOH . G 4 HOH A 157 9398 157 HOH HOH . G 4 HOH A 158 9399 158 HOH HOH . G 4 HOH A 159 9400 159 HOH HOH . G 4 HOH A 160 9401 160 HOH HOH . G 4 HOH A 161 9402 161 HOH HOH . G 4 HOH A 162 9403 162 HOH HOH . G 4 HOH A 163 9404 163 HOH HOH . G 4 HOH A 164 9405 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 DHK . . . F 3 36.508 43.06 83.893 1 36.41 ? C2 DHK 4733 A 1 HETATM 2 C C3 DHK . . . F 3 36.032 42.086 84.954 1 40.11 ? C3 DHK 4733 A 1 HETATM 3 O O3 DHK . . . F 3 34.654 41.788 84.709 1 46.99 ? O3 DHK 4733 A 1 HETATM 4 C C4 DHK . . . F 3 36.856 40.752 84.977 1 42.54 ? C4 DHK 4733 A 1 HETATM 5 O O4 DHK . . . F 3 36.064 39.712 85.551 1 45.25 ? O4 DHK 4733 A 1 HETATM 6 C C5 DHK . . . F 3 37.3 40.343 83.539 1 39.99 ? C5 DHK 4733 A 1 HETATM 7 C C1 DHK . . . F 3 37.454 42.79 82.986 1 32.14 ? C1 DHK 4733 A 1 HETATM 8 C C6 DHK . . . F 3 38.168 41.461 82.917 1 33.56 ? C6 DHK 4733 A 1 HETATM 9 C C DHK . . . F 3 37.822 43.84 82.006 1 27.27 ? C DHK 4733 A 1 HETATM 10 O O1 DHK . . . F 3 38.768 43.607 81.094 1 30.29 ? O1 DHK 4733 A 1 HETATM 11 O O2 DHK . . . F 3 37.272 44.921 82.018 1 29.21 ? O2 DHK 4733 A 1 HETATM 12 O O5 DHK . . . F 3 38.043 39.126 83.586 1 38.44 ? O5 DHK 4733 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #