data_2O7S # _model_server_result.job_id uKjzIXxlW8MZ8_D1imnTcQ _model_server_result.datetime_utc '2024-10-13 09:16:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4733}' # _entry.id 2O7S # _exptl.entry_id 2O7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-DEHYDROSHIKIMATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2O7S _cell.length_a 97.447 _cell.length_b 97.447 _cell.length_c 116.43 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 116.43 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 152 A LYS 241 1_555 C C5 DHK . A DHK 9241 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.465 ? covale ? covale2 A C GLN 301 A GLN 390 1_555 A N CSO 302 A CSO 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C CSO 302 A CSO 391 1_555 A N CYS 303 A CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C ASP 334 A ASP 423 1_555 A N CSO 335 A CSO 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C CSO 335 A CSO 424 1_555 A N ILE 336 A ILE 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C7 H10 O5' _chem_comp.formula_weight 174.151 _chem_comp.id DHK _chem_comp.mon_nstd_flag . _chem_comp.name 3-DEHYDROSHIKIMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 DHK doub 97 n n C2 C1 DHK sing 98 n n C2 H2 DHK sing 99 n n C3 O3 DHK sing 100 n n C3 C4 DHK sing 101 n n O3 H3 DHK sing 102 n n C4 O4 DHK sing 103 n n C4 C5 DHK sing 104 n n C4 H4 DHK sing 105 n n O4 HA DHK sing 106 n n C5 C6 DHK sing 107 n n C5 O5 DHK sing 108 n n C5 H5 DHK sing 109 n n C1 C6 DHK sing 110 n n C1 C DHK sing 111 n n C1 H1 DHK sing 112 n n C6 H6C1 DHK sing 113 n n C6 H6C2 DHK sing 114 n n C O1 DHK doub 115 n n C O2 DHK sing 116 n n O2 HC DHK sing 117 n n O5 HB DHK sing 118 n n # _atom_sites.entry_id 2O7S _atom_sites.fract_transf_matrix[1][1] 0.010262 _atom_sites.fract_transf_matrix[1][2] 0.005925 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1403 1403 SO4 SO4 . C 3 DHK A 1 9241 9241 DHK DHK . D 4 TLA A 1 1241 1241 TLA TLA . E 3 DHK A 1 4733 4733 DHK DHK . F 5 NAP A 1 1411 1411 NAP NAP . G 6 HOH A 1 9242 2 HOH HOH . G 6 HOH A 2 9243 3 HOH HOH . G 6 HOH A 3 9244 4 HOH HOH . G 6 HOH A 4 9245 5 HOH HOH . G 6 HOH A 5 9246 6 HOH HOH . G 6 HOH A 6 9247 7 HOH HOH . G 6 HOH A 7 9248 8 HOH HOH . G 6 HOH A 8 9249 9 HOH HOH . G 6 HOH A 9 9250 10 HOH HOH . G 6 HOH A 10 9251 11 HOH HOH . G 6 HOH A 11 9252 12 HOH HOH . G 6 HOH A 12 9253 13 HOH HOH . G 6 HOH A 13 9254 14 HOH HOH . G 6 HOH A 14 9255 15 HOH HOH . G 6 HOH A 15 9256 16 HOH HOH . G 6 HOH A 16 9257 17 HOH HOH . G 6 HOH A 17 9258 18 HOH HOH . G 6 HOH A 18 9259 19 HOH HOH . G 6 HOH A 19 9260 20 HOH HOH . G 6 HOH A 20 9261 21 HOH HOH . G 6 HOH A 21 9262 22 HOH HOH . G 6 HOH A 22 9263 23 HOH HOH . G 6 HOH A 23 9264 24 HOH HOH . G 6 HOH A 24 9265 25 HOH HOH . G 6 HOH A 25 9266 26 HOH HOH . G 6 HOH A 26 9267 27 HOH HOH . G 6 HOH A 27 9268 28 HOH HOH . G 6 HOH A 28 9269 29 HOH HOH . G 6 HOH A 29 9270 30 HOH HOH . G 6 HOH A 30 9271 31 HOH HOH . G 6 HOH A 31 9272 32 HOH HOH . G 6 HOH A 32 9273 33 HOH HOH . G 6 HOH A 33 9274 34 HOH HOH . G 6 HOH A 34 9275 35 HOH HOH . G 6 HOH A 35 9276 36 HOH HOH . G 6 HOH A 36 9277 37 HOH HOH . G 6 HOH A 37 9278 38 HOH HOH . G 6 HOH A 38 9279 39 HOH HOH . G 6 HOH A 39 9280 40 HOH HOH . G 6 HOH A 40 9281 41 HOH HOH . G 6 HOH A 41 9282 42 HOH HOH . G 6 HOH A 42 9283 43 HOH HOH . G 6 HOH A 43 9284 44 HOH HOH . G 6 HOH A 44 9285 45 HOH HOH . G 6 HOH A 45 9286 46 HOH HOH . G 6 HOH A 46 9287 47 HOH HOH . G 6 HOH A 47 9288 48 HOH HOH . G 6 HOH A 48 9289 49 HOH HOH . G 6 HOH A 49 9290 50 HOH HOH . G 6 HOH A 50 9291 51 HOH HOH . G 6 HOH A 51 9292 52 HOH HOH . G 6 HOH A 52 9293 53 HOH HOH . G 6 HOH A 53 9294 54 HOH HOH . G 6 HOH A 54 9295 55 HOH HOH . G 6 HOH A 55 9296 56 HOH HOH . G 6 HOH A 56 9297 57 HOH HOH . G 6 HOH A 57 9298 58 HOH HOH . G 6 HOH A 58 9299 59 HOH HOH . G 6 HOH A 59 9300 60 HOH HOH . G 6 HOH A 60 9301 61 HOH HOH . G 6 HOH A 61 9302 62 HOH HOH . G 6 HOH A 62 9303 63 HOH HOH . G 6 HOH A 63 9304 64 HOH HOH . G 6 HOH A 64 9305 65 HOH HOH . G 6 HOH A 65 9306 66 HOH HOH . G 6 HOH A 66 9307 68 HOH HOH . G 6 HOH A 67 9308 69 HOH HOH . G 6 HOH A 68 9309 70 HOH HOH . G 6 HOH A 69 9310 71 HOH HOH . G 6 HOH A 70 9311 72 HOH HOH . G 6 HOH A 71 9312 73 HOH HOH . G 6 HOH A 72 9313 74 HOH HOH . G 6 HOH A 73 9314 76 HOH HOH . G 6 HOH A 74 9315 77 HOH HOH . G 6 HOH A 75 9316 78 HOH HOH . G 6 HOH A 76 9317 79 HOH HOH . G 6 HOH A 77 9318 80 HOH HOH . G 6 HOH A 78 9319 81 HOH HOH . G 6 HOH A 79 9320 82 HOH HOH . G 6 HOH A 80 9321 83 HOH HOH . G 6 HOH A 81 9322 84 HOH HOH . G 6 HOH A 82 9323 85 HOH HOH . G 6 HOH A 83 9324 86 HOH HOH . G 6 HOH A 84 9325 87 HOH HOH . G 6 HOH A 85 9326 88 HOH HOH . G 6 HOH A 86 9327 89 HOH HOH . G 6 HOH A 87 9328 90 HOH HOH . G 6 HOH A 88 9329 91 HOH HOH . G 6 HOH A 89 9330 92 HOH HOH . G 6 HOH A 90 9331 93 HOH HOH . G 6 HOH A 91 9332 94 HOH HOH . G 6 HOH A 92 9333 95 HOH HOH . G 6 HOH A 93 9334 96 HOH HOH . G 6 HOH A 94 9335 97 HOH HOH . G 6 HOH A 95 9336 98 HOH HOH . G 6 HOH A 96 9337 99 HOH HOH . G 6 HOH A 97 9338 100 HOH HOH . G 6 HOH A 98 9339 101 HOH HOH . G 6 HOH A 99 9340 102 HOH HOH . G 6 HOH A 100 9341 103 HOH HOH . G 6 HOH A 101 9342 104 HOH HOH . G 6 HOH A 102 9343 105 HOH HOH . G 6 HOH A 103 9344 106 HOH HOH . G 6 HOH A 104 9345 107 HOH HOH . G 6 HOH A 105 9346 108 HOH HOH . G 6 HOH A 106 9347 109 HOH HOH . G 6 HOH A 107 9348 110 HOH HOH . G 6 HOH A 108 9349 111 HOH HOH . G 6 HOH A 109 9350 112 HOH HOH . G 6 HOH A 110 9351 113 HOH HOH . G 6 HOH A 111 9352 114 HOH HOH . G 6 HOH A 112 9353 115 HOH HOH . G 6 HOH A 113 9354 116 HOH HOH . G 6 HOH A 114 9355 117 HOH HOH . G 6 HOH A 115 9356 118 HOH HOH . G 6 HOH A 116 9357 119 HOH HOH . G 6 HOH A 117 9358 120 HOH HOH . G 6 HOH A 118 9359 121 HOH HOH . G 6 HOH A 119 9360 122 HOH HOH . G 6 HOH A 120 9361 124 HOH HOH . G 6 HOH A 121 9362 125 HOH HOH . G 6 HOH A 122 9363 126 HOH HOH . G 6 HOH A 123 9364 127 HOH HOH . G 6 HOH A 124 9365 128 HOH HOH . G 6 HOH A 125 9366 129 HOH HOH . G 6 HOH A 126 9367 130 HOH HOH . G 6 HOH A 127 9368 131 HOH HOH . G 6 HOH A 128 9369 132 HOH HOH . G 6 HOH A 129 9370 133 HOH HOH . G 6 HOH A 130 9371 134 HOH HOH . G 6 HOH A 131 9372 135 HOH HOH . G 6 HOH A 132 9373 136 HOH HOH . G 6 HOH A 133 9374 137 HOH HOH . G 6 HOH A 134 9375 138 HOH HOH . G 6 HOH A 135 9376 139 HOH HOH . G 6 HOH A 136 9377 140 HOH HOH . G 6 HOH A 137 9378 142 HOH HOH . G 6 HOH A 138 9379 143 HOH HOH . G 6 HOH A 139 9380 144 HOH HOH . G 6 HOH A 140 9381 145 HOH HOH . G 6 HOH A 141 9382 146 HOH HOH . G 6 HOH A 142 9383 147 HOH HOH . G 6 HOH A 143 9384 148 HOH HOH . G 6 HOH A 144 9385 149 HOH HOH . G 6 HOH A 145 9386 150 HOH HOH . G 6 HOH A 146 9387 151 HOH HOH . G 6 HOH A 147 9388 152 HOH HOH . G 6 HOH A 148 9389 153 HOH HOH . G 6 HOH A 149 9390 154 HOH HOH . G 6 HOH A 150 9391 155 HOH HOH . G 6 HOH A 151 9392 156 HOH HOH . G 6 HOH A 152 9393 157 HOH HOH . G 6 HOH A 153 9394 158 HOH HOH . G 6 HOH A 154 9395 159 HOH HOH . G 6 HOH A 155 9396 160 HOH HOH . G 6 HOH A 156 9397 161 HOH HOH . G 6 HOH A 157 9398 162 HOH HOH . G 6 HOH A 158 9399 163 HOH HOH . G 6 HOH A 159 9400 164 HOH HOH . G 6 HOH A 160 9401 165 HOH HOH . G 6 HOH A 161 9402 166 HOH HOH . G 6 HOH A 162 9403 167 HOH HOH . G 6 HOH A 163 9404 168 HOH HOH . G 6 HOH A 164 9405 169 HOH HOH . G 6 HOH A 165 9406 170 HOH HOH . G 6 HOH A 166 9407 171 HOH HOH . G 6 HOH A 167 9408 172 HOH HOH . G 6 HOH A 168 9409 173 HOH HOH . G 6 HOH A 169 9410 174 HOH HOH . G 6 HOH A 170 9411 175 HOH HOH . G 6 HOH A 171 9412 176 HOH HOH . G 6 HOH A 172 9413 177 HOH HOH . G 6 HOH A 173 9414 178 HOH HOH . G 6 HOH A 174 9415 179 HOH HOH . G 6 HOH A 175 9416 180 HOH HOH . G 6 HOH A 176 9417 181 HOH HOH . G 6 HOH A 177 9418 182 HOH HOH . G 6 HOH A 178 9419 183 HOH HOH . G 6 HOH A 179 9420 184 HOH HOH . G 6 HOH A 180 9421 185 HOH HOH . G 6 HOH A 181 9422 186 HOH HOH . G 6 HOH A 182 9423 187 HOH HOH . G 6 HOH A 183 9424 189 HOH HOH . G 6 HOH A 184 9425 190 HOH HOH . G 6 HOH A 185 9426 191 HOH HOH . G 6 HOH A 186 9427 192 HOH HOH . G 6 HOH A 187 9428 193 HOH HOH . G 6 HOH A 188 9429 194 HOH HOH . G 6 HOH A 189 9430 195 HOH HOH . G 6 HOH A 190 9431 196 HOH HOH . G 6 HOH A 191 9432 197 HOH HOH . G 6 HOH A 192 9433 198 HOH HOH . G 6 HOH A 193 9434 199 HOH HOH . G 6 HOH A 194 9435 200 HOH HOH . G 6 HOH A 195 9436 201 HOH HOH . G 6 HOH A 196 9437 202 HOH HOH . G 6 HOH A 197 9438 203 HOH HOH . G 6 HOH A 198 9439 204 HOH HOH . G 6 HOH A 199 9440 205 HOH HOH . G 6 HOH A 200 9441 206 HOH HOH . G 6 HOH A 201 9442 207 HOH HOH . G 6 HOH A 202 9443 208 HOH HOH . G 6 HOH A 203 9444 209 HOH HOH . G 6 HOH A 204 9445 210 HOH HOH . G 6 HOH A 205 9446 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 DHK . . . E 3 36.548 43.642 84.614 1 23.28 ? C2 DHK 4733 A 1 HETATM 2 C C3 DHK . . . E 3 36.076 42.649 85.646 1 25.96 ? C3 DHK 4733 A 1 HETATM 3 O O3 DHK . . . E 3 34.759 42.212 85.289 1 31.22 ? O3 DHK 4733 A 1 HETATM 4 C C4 DHK . . . E 3 37.014 41.412 85.802 1 29.03 ? C4 DHK 4733 A 1 HETATM 5 O O4 DHK . . . E 3 36.294 40.34 86.42 1 26.73 ? O4 DHK 4733 A 1 HETATM 6 C C5 DHK . . . E 3 37.564 40.966 84.42 1 27.26 ? C5 DHK 4733 A 1 HETATM 7 C C1 DHK . . . E 3 37.55 43.416 83.777 1 24.55 ? C1 DHK 4733 A 1 HETATM 8 C C6 DHK . . . E 3 38.349 42.124 83.765 1 25.93 ? C6 DHK 4733 A 1 HETATM 9 C C DHK . . . E 3 37.909 44.469 82.81 1 22.62 ? C DHK 4733 A 1 HETATM 10 O O1 DHK . . . E 3 38.917 44.261 81.956 1 21.54 ? O1 DHK 4733 A 1 HETATM 11 O O2 DHK . . . E 3 37.292 45.531 82.778 1 20.53 ? O2 DHK 4733 A 1 HETATM 12 O O5 DHK . . . E 3 38.419 39.833 84.57 1 30.64 ? O5 DHK 4733 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #