data_2O8M # _model_server_result.job_id lbcI0dp8qlSl_mN8QsjJ1A _model_server_result.datetime_utc '2024-11-08 19:01:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 2O8M # _exptl.entry_id 2O8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2O8M _cell.length_a 224.64 _cell.length_b 224.64 _cell.length_c 75.36 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 15 A THR 4 1_555 H NA NA . C NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 A OG1 THR 15 A THR 4 1_555 H NA NA . C NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc3 A O ALA 16 A ALA 5 1_555 F NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A SG CYS 108 A CYS 97 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 A SG CYS 110 A CYS 99 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 A O ALA 122 A ALA 111 1_555 F NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 A SG CYS 156 A CYS 145 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc8 E ZN ZN . A ZN 201 1_555 I O HOH . A HOH 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc9 F NA NA . A NA 1002 1_555 I O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc10 F NA NA . A NA 1002 1_555 I O HOH . A HOH 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 F NA NA . A NA 1002 1_555 J O HOH . B HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc12 I O HOH . A HOH 1022 1_555 H NA NA . C NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc13 B SG CYS 108 B CYS 97 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc14 B SG CYS 110 B CYS 99 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc15 B SG CYS 156 B CYS 145 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc16 G ZN ZN . B ZN 201 1_555 J O HOH . B HOH 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc17 C O LEU 13 C LEU 231 1_555 H NA NA . C NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc18 C O GLY 15 C GLY 233 1_555 H NA NA . C NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc19 H NA NA . C NA 1001 1_555 K O HOH . C HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2O8M _atom_sites.fract_transf_matrix[1][1] 0.004452 _atom_sites.fract_transf_matrix[1][2] 0.00257 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 201 201 ZN ZN . F 4 NA A 1 1002 1002 NA NA . G 3 ZN B 1 201 201 ZN ZN . H 4 NA C 1 1001 1001 NA NA . I 5 HOH A 1 1003 2 HOH HOH . I 5 HOH A 2 1004 3 HOH HOH . I 5 HOH A 3 1005 4 HOH HOH . I 5 HOH A 4 1006 8 HOH HOH . I 5 HOH A 5 1007 11 HOH HOH . I 5 HOH A 6 1008 12 HOH HOH . I 5 HOH A 7 1009 14 HOH HOH . I 5 HOH A 8 1010 16 HOH HOH . I 5 HOH A 9 1011 19 HOH HOH . I 5 HOH A 10 1012 21 HOH HOH . I 5 HOH A 11 1013 25 HOH HOH . I 5 HOH A 12 1014 27 HOH HOH . I 5 HOH A 13 1015 28 HOH HOH . I 5 HOH A 14 1016 29 HOH HOH . I 5 HOH A 15 1017 31 HOH HOH . I 5 HOH A 16 1018 33 HOH HOH . I 5 HOH A 17 1019 34 HOH HOH . I 5 HOH A 18 1020 38 HOH HOH . I 5 HOH A 19 1021 39 HOH HOH . I 5 HOH A 20 1022 40 HOH HOH . I 5 HOH A 21 1023 43 HOH HOH . I 5 HOH A 22 1024 44 HOH HOH . I 5 HOH A 23 1025 45 HOH HOH . I 5 HOH A 24 1026 47 HOH HOH . I 5 HOH A 25 1027 50 HOH HOH . I 5 HOH A 26 1028 51 HOH HOH . I 5 HOH A 27 1029 52 HOH HOH . I 5 HOH A 28 1030 54 HOH HOH . I 5 HOH A 29 1031 55 HOH HOH . I 5 HOH A 30 1032 57 HOH HOH . I 5 HOH A 31 1033 59 HOH HOH . I 5 HOH A 32 1034 60 HOH HOH . I 5 HOH A 33 1035 61 HOH HOH . I 5 HOH A 34 1036 62 HOH HOH . I 5 HOH A 35 1037 63 HOH HOH . I 5 HOH A 36 1038 65 HOH HOH . I 5 HOH A 37 1039 66 HOH HOH . I 5 HOH A 38 1040 71 HOH HOH . I 5 HOH A 39 1041 72 HOH HOH . I 5 HOH A 40 1042 73 HOH HOH . I 5 HOH A 41 1043 75 HOH HOH . I 5 HOH A 42 1044 76 HOH HOH . I 5 HOH A 43 1045 77 HOH HOH . I 5 HOH A 44 1046 80 HOH HOH . I 5 HOH A 45 1047 81 HOH HOH . I 5 HOH A 46 1048 84 HOH HOH . I 5 HOH A 47 1049 87 HOH HOH . I 5 HOH A 48 1050 89 HOH HOH . I 5 HOH A 49 1051 94 HOH HOH . I 5 HOH A 50 1052 98 HOH HOH . I 5 HOH A 51 1053 99 HOH HOH . I 5 HOH A 52 1054 100 HOH HOH . I 5 HOH A 53 1055 103 HOH HOH . I 5 HOH A 54 1056 104 HOH HOH . I 5 HOH A 55 1057 106 HOH HOH . I 5 HOH A 56 1058 107 HOH HOH . I 5 HOH A 57 1059 110 HOH HOH . I 5 HOH A 58 1060 111 HOH HOH . I 5 HOH A 59 1061 113 HOH HOH . I 5 HOH A 60 1062 114 HOH HOH . I 5 HOH A 61 1063 119 HOH HOH . I 5 HOH A 62 1064 120 HOH HOH . I 5 HOH A 63 1065 121 HOH HOH . I 5 HOH A 64 1066 122 HOH HOH . I 5 HOH A 65 1067 125 HOH HOH . I 5 HOH A 66 1068 133 HOH HOH . I 5 HOH A 67 1069 138 HOH HOH . I 5 HOH A 68 1070 139 HOH HOH . I 5 HOH A 69 1071 140 HOH HOH . I 5 HOH A 70 1072 141 HOH HOH . I 5 HOH A 71 1073 142 HOH HOH . I 5 HOH A 72 1074 145 HOH HOH . I 5 HOH A 73 1075 146 HOH HOH . I 5 HOH A 74 1076 147 HOH HOH . I 5 HOH A 75 1077 148 HOH HOH . I 5 HOH A 76 1078 149 HOH HOH . I 5 HOH A 77 1079 150 HOH HOH . I 5 HOH A 78 1080 151 HOH HOH . I 5 HOH A 79 1081 153 HOH HOH . I 5 HOH A 80 1082 154 HOH HOH . I 5 HOH A 81 1083 155 HOH HOH . I 5 HOH A 82 1084 156 HOH HOH . I 5 HOH A 83 1085 162 HOH HOH . I 5 HOH A 84 1086 164 HOH HOH . I 5 HOH A 85 1087 165 HOH HOH . I 5 HOH A 86 1088 167 HOH HOH . I 5 HOH A 87 1089 171 HOH HOH . I 5 HOH A 88 1090 173 HOH HOH . I 5 HOH A 89 1091 174 HOH HOH . I 5 HOH A 90 1092 175 HOH HOH . I 5 HOH A 91 1093 180 HOH HOH . I 5 HOH A 92 1094 181 HOH HOH . I 5 HOH A 93 1095 183 HOH HOH . I 5 HOH A 94 1096 184 HOH HOH . I 5 HOH A 95 1097 186 HOH HOH . I 5 HOH A 96 1098 191 HOH HOH . I 5 HOH A 97 1099 193 HOH HOH . I 5 HOH A 98 1100 194 HOH HOH . I 5 HOH A 99 1101 197 HOH HOH . I 5 HOH A 100 1102 200 HOH HOH . I 5 HOH A 101 1103 201 HOH HOH . I 5 HOH A 102 1104 204 HOH HOH . I 5 HOH A 103 1105 206 HOH HOH . I 5 HOH A 104 1106 210 HOH HOH . I 5 HOH A 105 1107 211 HOH HOH . I 5 HOH A 106 1108 213 HOH HOH . I 5 HOH A 107 1109 219 HOH HOH . I 5 HOH A 108 1110 220 HOH HOH . I 5 HOH A 109 1111 225 HOH HOH . I 5 HOH A 110 1112 226 HOH HOH . I 5 HOH A 111 1113 227 HOH HOH . I 5 HOH A 112 1114 228 HOH HOH . I 5 HOH A 113 1115 229 HOH HOH . I 5 HOH A 114 1116 801 HOH HOH . I 5 HOH A 115 1117 901 HOH HOH . I 5 HOH A 116 1118 902 HOH HOH . I 5 HOH A 117 1119 903 HOH HOH . J 5 HOH B 1 202 1 HOH HOH . J 5 HOH B 2 203 5 HOH HOH . J 5 HOH B 3 204 7 HOH HOH . J 5 HOH B 4 205 10 HOH HOH . J 5 HOH B 5 206 15 HOH HOH . J 5 HOH B 6 207 18 HOH HOH . J 5 HOH B 7 208 20 HOH HOH . J 5 HOH B 8 209 22 HOH HOH . J 5 HOH B 9 210 24 HOH HOH . J 5 HOH B 10 211 26 HOH HOH . J 5 HOH B 11 212 30 HOH HOH . J 5 HOH B 12 213 32 HOH HOH . J 5 HOH B 13 214 35 HOH HOH . J 5 HOH B 14 215 37 HOH HOH . J 5 HOH B 15 216 41 HOH HOH . J 5 HOH B 16 217 42 HOH HOH . J 5 HOH B 17 218 49 HOH HOH . J 5 HOH B 18 219 53 HOH HOH . J 5 HOH B 19 220 56 HOH HOH . J 5 HOH B 20 221 64 HOH HOH . J 5 HOH B 21 222 67 HOH HOH . J 5 HOH B 22 223 68 HOH HOH . J 5 HOH B 23 224 69 HOH HOH . J 5 HOH B 24 225 70 HOH HOH . J 5 HOH B 25 226 74 HOH HOH . J 5 HOH B 26 227 78 HOH HOH . J 5 HOH B 27 228 79 HOH HOH . J 5 HOH B 28 229 82 HOH HOH . J 5 HOH B 29 230 85 HOH HOH . J 5 HOH B 30 231 86 HOH HOH . J 5 HOH B 31 232 88 HOH HOH . J 5 HOH B 32 233 90 HOH HOH . J 5 HOH B 33 234 91 HOH HOH . J 5 HOH B 34 235 92 HOH HOH . J 5 HOH B 35 236 93 HOH HOH . J 5 HOH B 36 237 95 HOH HOH . J 5 HOH B 37 238 96 HOH HOH . J 5 HOH B 38 239 97 HOH HOH . J 5 HOH B 39 240 102 HOH HOH . J 5 HOH B 40 241 105 HOH HOH . J 5 HOH B 41 242 109 HOH HOH . J 5 HOH B 42 243 112 HOH HOH . J 5 HOH B 43 244 115 HOH HOH . J 5 HOH B 44 245 116 HOH HOH . J 5 HOH B 45 246 117 HOH HOH . J 5 HOH B 46 247 118 HOH HOH . J 5 HOH B 47 248 123 HOH HOH . J 5 HOH B 48 249 124 HOH HOH . J 5 HOH B 49 250 127 HOH HOH . J 5 HOH B 50 251 128 HOH HOH . J 5 HOH B 51 252 129 HOH HOH . J 5 HOH B 52 253 130 HOH HOH . J 5 HOH B 53 254 131 HOH HOH . J 5 HOH B 54 255 132 HOH HOH . J 5 HOH B 55 256 134 HOH HOH . J 5 HOH B 56 257 135 HOH HOH . J 5 HOH B 57 258 136 HOH HOH . J 5 HOH B 58 259 143 HOH HOH . J 5 HOH B 59 260 157 HOH HOH . J 5 HOH B 60 261 158 HOH HOH . J 5 HOH B 61 262 159 HOH HOH . J 5 HOH B 62 263 161 HOH HOH . J 5 HOH B 63 264 166 HOH HOH . J 5 HOH B 64 265 168 HOH HOH . J 5 HOH B 65 266 169 HOH HOH . J 5 HOH B 66 267 172 HOH HOH . J 5 HOH B 67 268 176 HOH HOH . J 5 HOH B 68 269 177 HOH HOH . J 5 HOH B 69 270 178 HOH HOH . J 5 HOH B 70 271 182 HOH HOH . J 5 HOH B 71 272 185 HOH HOH . J 5 HOH B 72 273 187 HOH HOH . J 5 HOH B 73 274 188 HOH HOH . J 5 HOH B 74 275 189 HOH HOH . J 5 HOH B 75 276 195 HOH HOH . J 5 HOH B 76 277 196 HOH HOH . J 5 HOH B 77 278 198 HOH HOH . J 5 HOH B 78 279 199 HOH HOH . J 5 HOH B 79 280 203 HOH HOH . J 5 HOH B 80 281 205 HOH HOH . J 5 HOH B 81 282 208 HOH HOH . J 5 HOH B 82 283 209 HOH HOH . J 5 HOH B 83 284 212 HOH HOH . J 5 HOH B 84 285 214 HOH HOH . J 5 HOH B 85 286 215 HOH HOH . J 5 HOH B 86 287 216 HOH HOH . J 5 HOH B 87 288 217 HOH HOH . J 5 HOH B 88 289 218 HOH HOH . J 5 HOH B 89 290 223 HOH HOH . J 5 HOH B 90 291 224 HOH HOH . J 5 HOH B 91 292 802 HOH HOH . J 5 HOH B 92 293 904 HOH HOH . K 5 HOH C 1 1002 6 HOH HOH . K 5 HOH C 2 1003 17 HOH HOH . K 5 HOH C 3 1004 23 HOH HOH . K 5 HOH C 4 1005 46 HOH HOH . K 5 HOH C 5 1006 58 HOH HOH . K 5 HOH C 6 1007 101 HOH HOH . K 5 HOH C 7 1008 126 HOH HOH . K 5 HOH C 8 1009 144 HOH HOH . K 5 HOH C 9 1010 152 HOH HOH . K 5 HOH C 10 1011 179 HOH HOH . K 5 HOH C 11 1012 190 HOH HOH . K 5 HOH C 12 1013 221 HOH HOH . K 5 HOH C 13 1014 222 HOH HOH . L 5 HOH D 1 242 9 HOH HOH . L 5 HOH D 2 243 13 HOH HOH . L 5 HOH D 3 244 36 HOH HOH . L 5 HOH D 4 245 48 HOH HOH . L 5 HOH D 5 246 83 HOH HOH . L 5 HOH D 6 247 108 HOH HOH . L 5 HOH D 7 248 137 HOH HOH . L 5 HOH D 8 249 160 HOH HOH . L 5 HOH D 9 250 163 HOH HOH . L 5 HOH D 10 251 170 HOH HOH . L 5 HOH D 11 252 192 HOH HOH . L 5 HOH D 12 253 202 HOH HOH . L 5 HOH D 13 254 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 196.203 _atom_site.Cartn_y 14.312 _atom_site.Cartn_z 50.741 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #