data_2O9G # _model_server_result.job_id qCJUGN2nL6mQi9wop4XVCA _model_server_result.datetime_utc '2025-05-14 05:49:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 2O9G # _exptl.entry_id 2O9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O9G _cell.length_a 91.156 _cell.length_b 91.156 _cell.length_c 77.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND2 ASN 66 A ASN 63 1_555 G HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc2 A SG CYS 173 A CYS 170 1_555 E HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc3 D HG HG . A HG 303 1_555 E HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc4 E HG HG . A HG 304 1_555 F HG HG . A HG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 E HG HG . A HG 304 1_555 G HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 F HG HG . A HG 305 1_555 G HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.536 ? metalc ? metalc7 F HG HG . A HG 305 1_555 H O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc8 G HG HG . A HG 306 1_555 H O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2O9G _atom_sites.fract_transf_matrix[1][1] 0.01097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 301 301 BOG BOG . C 2 BOG A 1 302 302 BOG BOG . D 3 HG A 1 303 201 HG HG . E 3 HG A 1 304 202 HG HG . F 3 HG A 1 305 203 HG HG . G 3 HG A 1 306 204 HG HG . H 4 HOH A 1 307 0 HOH HOH . H 4 HOH A 2 308 1 HOH HOH . H 4 HOH A 3 309 2 HOH HOH . H 4 HOH A 4 310 3 HOH HOH . H 4 HOH A 5 311 4 HOH HOH . H 4 HOH A 6 312 5 HOH HOH . H 4 HOH A 7 313 6 HOH HOH . H 4 HOH A 8 314 7 HOH HOH . H 4 HOH A 9 315 8 HOH HOH . H 4 HOH A 10 316 9 HOH HOH . H 4 HOH A 11 317 10 HOH HOH . H 4 HOH A 12 318 11 HOH HOH . H 4 HOH A 13 319 12 HOH HOH . H 4 HOH A 14 320 13 HOH HOH . H 4 HOH A 15 321 14 HOH HOH . H 4 HOH A 16 322 15 HOH HOH . H 4 HOH A 17 323 16 HOH HOH . H 4 HOH A 18 324 17 HOH HOH . H 4 HOH A 19 325 18 HOH HOH . H 4 HOH A 20 326 19 HOH HOH . H 4 HOH A 21 327 20 HOH HOH . H 4 HOH A 22 328 21 HOH HOH . H 4 HOH A 23 329 22 HOH HOH . H 4 HOH A 24 330 23 HOH HOH . H 4 HOH A 25 331 24 HOH HOH . H 4 HOH A 26 332 25 HOH HOH . H 4 HOH A 27 333 26 HOH HOH . H 4 HOH A 28 334 27 HOH HOH . H 4 HOH A 29 335 28 HOH HOH . H 4 HOH A 30 336 29 HOH HOH . H 4 HOH A 31 337 30 HOH HOH . H 4 HOH A 32 338 31 HOH HOH . H 4 HOH A 33 339 32 HOH HOH . H 4 HOH A 34 340 33 HOH HOH . H 4 HOH A 35 341 34 HOH HOH . H 4 HOH A 36 342 35 HOH HOH . H 4 HOH A 37 343 36 HOH HOH . H 4 HOH A 38 344 37 HOH HOH . H 4 HOH A 39 345 38 HOH HOH . H 4 HOH A 40 346 39 HOH HOH . H 4 HOH A 41 347 40 HOH HOH . H 4 HOH A 42 348 41 HOH HOH . H 4 HOH A 43 349 42 HOH HOH . H 4 HOH A 44 350 43 HOH HOH . H 4 HOH A 45 351 44 HOH HOH . H 4 HOH A 46 352 45 HOH HOH . H 4 HOH A 47 353 46 HOH HOH . H 4 HOH A 48 354 47 HOH HOH . H 4 HOH A 49 355 48 HOH HOH . H 4 HOH A 50 356 49 HOH HOH . H 4 HOH A 51 357 50 HOH HOH . H 4 HOH A 52 358 51 HOH HOH . H 4 HOH A 53 359 52 HOH HOH . H 4 HOH A 54 360 53 HOH HOH . H 4 HOH A 55 361 54 HOH HOH . H 4 HOH A 56 362 55 HOH HOH . H 4 HOH A 57 363 56 HOH HOH . H 4 HOH A 58 364 57 HOH HOH . H 4 HOH A 59 365 58 HOH HOH . H 4 HOH A 60 366 59 HOH HOH . H 4 HOH A 61 367 60 HOH HOH . H 4 HOH A 62 368 61 HOH HOH . H 4 HOH A 63 369 62 HOH HOH . H 4 HOH A 64 370 63 HOH HOH . H 4 HOH A 65 371 64 HOH HOH . H 4 HOH A 66 372 65 HOH HOH . H 4 HOH A 67 373 66 HOH HOH . H 4 HOH A 68 374 67 HOH HOH . H 4 HOH A 69 375 68 HOH HOH . H 4 HOH A 70 376 69 HOH HOH . H 4 HOH A 71 377 70 HOH HOH . H 4 HOH A 72 378 71 HOH HOH . H 4 HOH A 73 379 72 HOH HOH . H 4 HOH A 74 380 73 HOH HOH . H 4 HOH A 75 381 74 HOH HOH . H 4 HOH A 76 382 75 HOH HOH . H 4 HOH A 77 383 76 HOH HOH . H 4 HOH A 78 384 77 HOH HOH . H 4 HOH A 79 385 78 HOH HOH . H 4 HOH A 80 386 79 HOH HOH . H 4 HOH A 81 387 80 HOH HOH . H 4 HOH A 82 388 81 HOH HOH . H 4 HOH A 83 389 82 HOH HOH . H 4 HOH A 84 390 83 HOH HOH . H 4 HOH A 85 391 84 HOH HOH . H 4 HOH A 86 392 85 HOH HOH . H 4 HOH A 87 393 86 HOH HOH . H 4 HOH A 88 394 87 HOH HOH . H 4 HOH A 89 395 88 HOH HOH . H 4 HOH A 90 396 89 HOH HOH . H 4 HOH A 91 397 90 HOH HOH . H 4 HOH A 92 398 91 HOH HOH . H 4 HOH A 93 399 92 HOH HOH . H 4 HOH A 94 400 94 HOH HOH . H 4 HOH A 95 401 95 HOH HOH . H 4 HOH A 96 402 96 HOH HOH . H 4 HOH A 97 403 97 HOH HOH . H 4 HOH A 98 404 98 HOH HOH . H 4 HOH A 99 405 99 HOH HOH . H 4 HOH A 100 406 100 HOH HOH . H 4 HOH A 101 407 101 HOH HOH . H 4 HOH A 102 408 102 HOH HOH . H 4 HOH A 103 409 103 HOH HOH . H 4 HOH A 104 410 104 HOH HOH . H 4 HOH A 105 411 105 HOH HOH . H 4 HOH A 106 412 106 HOH HOH . H 4 HOH A 107 413 107 HOH HOH . H 4 HOH A 108 414 108 HOH HOH . H 4 HOH A 109 415 109 HOH HOH . H 4 HOH A 110 416 110 HOH HOH . H 4 HOH A 111 417 111 HOH HOH . H 4 HOH A 112 418 112 HOH HOH . H 4 HOH A 113 419 113 HOH HOH . H 4 HOH A 114 420 114 HOH HOH . H 4 HOH A 115 421 115 HOH HOH . H 4 HOH A 116 422 116 HOH HOH . H 4 HOH A 117 423 117 HOH HOH . H 4 HOH A 118 424 118 HOH HOH . H 4 HOH A 119 425 119 HOH HOH . H 4 HOH A 120 426 120 HOH HOH . H 4 HOH A 121 427 121 HOH HOH . H 4 HOH A 122 428 122 HOH HOH . H 4 HOH A 123 429 123 HOH HOH . H 4 HOH A 124 430 124 HOH HOH . H 4 HOH A 125 431 125 HOH HOH . H 4 HOH A 126 432 126 HOH HOH . H 4 HOH A 127 433 127 HOH HOH . H 4 HOH A 128 434 128 HOH HOH . H 4 HOH A 129 435 129 HOH HOH . H 4 HOH A 130 436 130 HOH HOH . H 4 HOH A 131 437 131 HOH HOH . H 4 HOH A 132 438 132 HOH HOH . H 4 HOH A 133 439 133 HOH HOH . H 4 HOH A 134 440 134 HOH HOH . H 4 HOH A 135 441 135 HOH HOH . H 4 HOH A 136 442 137 HOH HOH . H 4 HOH A 137 443 138 HOH HOH . H 4 HOH A 138 444 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 -24.448 28.053 2.294 1 48.57 ? C1 BOG 301 A 1 HETATM 2 O O1 BOG . . . B 2 -24.091 28.175 0.911 1 47.48 ? O1 BOG 301 A 1 HETATM 3 C C2 BOG . . . B 2 -23.155 28.037 3.112 1 47.61 ? C2 BOG 301 A 1 HETATM 4 O O2 BOG . . . B 2 -22.401 29.205 2.771 1 45.41 ? O2 BOG 301 A 1 HETATM 5 C C3 BOG . . . B 2 -23.41 27.896 4.631 1 48.1 ? C3 BOG 301 A 1 HETATM 6 O O3 BOG . . . B 2 -23.241 29.114 5.367 1 47.53 ? O3 BOG 301 A 1 HETATM 7 C C4 BOG . . . B 2 -24.793 27.337 4.941 1 48.37 ? C4 BOG 301 A 1 HETATM 8 O O4 BOG . . . B 2 -24.719 26.765 6.251 1 47.59 ? O4 BOG 301 A 1 HETATM 9 C C5 BOG . . . B 2 -25.152 26.299 3.868 1 48.87 ? C5 BOG 301 A 1 HETATM 10 O O5 BOG . . . B 2 -25.296 26.925 2.58 1 48.84 ? O5 BOG 301 A 1 HETATM 11 C C6 BOG . . . B 2 -26.404 25.472 4.163 1 49.41 ? C6 BOG 301 A 1 HETATM 12 O O6 BOG . . . B 2 -27.53 26.321 4.385 1 51.32 ? O6 BOG 301 A 1 HETATM 13 C C1' BOG . . . B 2 -24.95 27.542 -0.038 1 49.02 ? C1' BOG 301 A 1 HETATM 14 C C2' BOG . . . B 2 -24.072 26.727 -0.979 1 49.63 ? C2' BOG 301 A 1 HETATM 15 C C3' BOG . . . B 2 -24.421 26.968 -2.442 1 51.63 ? C3' BOG 301 A 1 HETATM 16 C C4' BOG . . . B 2 -23.704 25.962 -3.34 1 52.63 ? C4' BOG 301 A 1 HETATM 17 C C5' BOG . . . B 2 -24.67 25.272 -4.301 1 53.57 ? C5' BOG 301 A 1 HETATM 18 C C6' BOG . . . B 2 -23.965 24.191 -5.112 1 53.88 ? C6' BOG 301 A 1 HETATM 19 C C7' BOG . . . B 2 -24.736 23.854 -6.387 1 54.86 ? C7' BOG 301 A 1 HETATM 20 C C8' BOG . . . B 2 -23.818 23.805 -7.594 1 54.97 ? C8' BOG 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #