data_2OA0
#
_model_server_result.job_id            Y2J_6Wl2nB64W9y7sW2efw 
_model_server_result.datetime_utc      '2024-11-28 10:12:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2oa0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    2OA0 
#
_exptl.entry_id    2OA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.83 
_cell.angle_gamma         90 
_cell.entry_id            2OA0 
_cell.length_a            62.498 
_cell.length_b            96.836 
_cell.length_c            154.856 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            MG 
_struct_conn.ptnr1_label_comp_id            MG 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             MG 
_struct_conn.ptnr1_auth_seq_id              995 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            O3B 
_struct_conn.ptnr2_label_comp_id            ADP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             ADP 
_struct_conn.ptnr2_auth_seq_id              1002 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                3.116 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2OA0 
_atom_sites.fract_transf_matrix[1][1]    0.016001 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001351 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010327 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006481 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 995 995 MG MG . 
C 3 CZA A 1 1001 1001 CZA CZA . 
D 4 ADP A 1 1002 1002 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 4 26.341 -3.201 58.211 1 117.9 ? PB ADP 1002 A 1 
HETATM 2 O O1B ADP . . . D 4 26.9 -2.699 59.531 1 117.88 ? O1B ADP 1002 A 1 
HETATM 3 O O2B ADP . . . D 4 26.035 -4.693 58.137 1 117.64 ? O2B ADP 1002 A 1 
HETATM 4 O O3B ADP . . . D 4 27.064 -2.679 56.98 1 118.47 ? O3B ADP 1002 A 1 
HETATM 5 P PA ADP . . . D 4 23.742 -3.382 58.648 1 109.5 ? PA ADP 1002 A 1 
HETATM 6 O O1A ADP . . . D 4 23.62 -4.558 57.695 1 109.4 ? O1A ADP 1002 A 1 
HETATM 7 O O2A ADP . . . D 4 22.579 -2.456 58.914 1 109.82 ? O2A ADP 1002 A 1 
HETATM 8 O O3A ADP . . . D 4 24.926 -2.465 58.141 1 111.94 ? O3A ADP 1002 A 1 
HETATM 9 O O5' ADP . . . D 4 24.357 -3.886 60.058 1 107.65 ? O5' ADP 1002 A 1 
HETATM 10 C C5' ADP . . . D 4 24.208 -3.079 61.229 1 103.2 ? C5' ADP 1002 A 1 
HETATM 11 C C4' ADP . . . D 4 24.852 -3.732 62.443 1 99.96 ? C4' ADP 1002 A 1 
HETATM 12 O O4' ADP . . . D 4 24.144 -4.896 62.875 1 99.1 ? O4' ADP 1002 A 1 
HETATM 13 C C3' ADP . . . D 4 26.261 -4.203 62.16 1 98.74 ? C3' ADP 1002 A 1 
HETATM 14 O O3' ADP . . . D 4 27.166 -3.135 62.408 1 99.43 ? O3' ADP 1002 A 1 
HETATM 15 C C2' ADP . . . D 4 26.467 -5.263 63.207 1 98.71 ? C2' ADP 1002 A 1 
HETATM 16 O O2' ADP . . . D 4 27.017 -4.594 64.361 1 99.46 ? O2' ADP 1002 A 1 
HETATM 17 C C1' ADP . . . D 4 25.063 -5.819 63.487 1 97.64 ? C1' ADP 1002 A 1 
HETATM 18 N N9 ADP . . . D 4 24.863 -7.194 62.926 1 94.32 ? N9 ADP 1002 A 1 
HETATM 19 C C8 ADP . . . D 4 24.971 -7.492 61.627 1 92.95 ? C8 ADP 1002 A 1 
HETATM 20 N N7 ADP . . . D 4 24.721 -8.805 61.417 1 92.49 ? N7 ADP 1002 A 1 
HETATM 21 C C5 ADP . . . D 4 24.443 -9.375 62.592 1 91.58 ? C5 ADP 1002 A 1 
HETATM 22 C C6 ADP . . . D 4 24.096 -10.742 63.032 1 91.91 ? C6 ADP 1002 A 1 
HETATM 23 N N6 ADP . . . D 4 24.008 -11.749 62.123 1 92 ? N6 ADP 1002 A 1 
HETATM 24 N N1 ADP . . . D 4 23.867 -10.942 64.353 1 93.47 ? N1 ADP 1002 A 1 
HETATM 25 C C2 ADP . . . D 4 23.961 -9.913 65.218 1 94.96 ? C2 ADP 1002 A 1 
HETATM 26 N N3 ADP . . . D 4 24.277 -8.64 64.872 1 93.84 ? N3 ADP 1002 A 1 
HETATM 27 C C4 ADP . . . D 4 24.532 -8.311 63.59 1 92.4 ? C4 ADP 1002 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#