data_2OAC # _model_server_result.job_id DLypHs6jKzlLbU_CByEFNA _model_server_result.datetime_utc '2024-11-25 15:24:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 2OAC # _exptl.entry_id 2OAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.444 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-(P-NITROBENZYL)GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OAC _cell.length_a 56.36 _cell.length_b 77.14 _cell.length_c 101.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H22 N4 O8 S' _chem_comp.formula_weight 442.444 _chem_comp.id GTB _chem_comp.mon_nstd_flag . _chem_comp.name S-(P-NITROBENZYL)GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GTB sing 129 n n N1 HN11 GTB sing 130 n n N1 HN12 GTB sing 131 n n CA1 C1 GTB sing 132 n n CA1 CB1 GTB sing 133 n n CA1 HA1 GTB sing 134 n n C1 O11 GTB doub 135 n n C1 O12 GTB sing 136 n n CB1 CG1 GTB sing 137 n n CB1 HB11 GTB sing 138 n n CB1 HB12 GTB sing 139 n n CG1 CD1 GTB sing 140 n n CG1 HG11 GTB sing 141 n n CG1 HG12 GTB sing 142 n n CD1 OE1 GTB doub 143 n n CD1 N2 GTB sing 144 n n N2 CA2 GTB sing 145 n n N2 HN2 GTB sing 146 n n CA2 C2 GTB sing 147 n n CA2 CB2 GTB sing 148 n n CA2 HA2 GTB sing 149 n n C2 O2 GTB doub 150 n n C2 N3 GTB sing 151 n n CB2 SG2 GTB sing 152 n n CB2 HB21 GTB sing 153 n n CB2 HB22 GTB sing 154 n n SG2 C' GTB sing 155 n n N3 CA3 GTB sing 156 n n N3 HN3 GTB sing 157 n n CA3 C3 GTB sing 158 n n CA3 HA31 GTB sing 159 n n CA3 HA32 GTB sing 160 n n C3 O31 GTB doub 161 n n C3 O32 GTB sing 162 n n C' C1' GTB sing 163 n n C' "H'1" GTB sing 164 n n C' "H'2" GTB sing 165 n n C1' C2' GTB doub 166 n y C1' C6' GTB sing 167 n y C2' C3' GTB sing 168 n y C2' H2' GTB sing 169 n n C3' C4' GTB doub 170 n y C3' H3' GTB sing 171 n n C4' N41 GTB sing 172 n n C4' C5' GTB sing 173 n y N41 O41 GTB sing 174 n n N41 O42 GTB doub 175 n n C5' C6' GTB doub 176 n y C5' H5' GTB sing 177 n n C6' H6' GTB sing 178 n n O12 HO1 GTB sing 179 n n O32 HO3 GTB sing 180 n n # _atom_sites.entry_id 2OAC _atom_sites.fract_transf_matrix[1][1] 0.017743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTB A 1 301 301 GTB GTB . D 2 GTB B 1 302 302 GTB GTB . E 3 HOH A 1 302 1 HOH HOH . E 3 HOH A 2 303 4 HOH HOH . E 3 HOH A 3 304 6 HOH HOH . E 3 HOH A 4 305 8 HOH HOH . E 3 HOH A 5 306 9 HOH HOH . E 3 HOH A 6 307 11 HOH HOH . E 3 HOH A 7 308 13 HOH HOH . E 3 HOH A 8 309 18 HOH HOH . E 3 HOH A 9 310 23 HOH HOH . E 3 HOH A 10 311 26 HOH HOH . E 3 HOH A 11 312 27 HOH HOH . E 3 HOH A 12 313 29 HOH HOH . E 3 HOH A 13 314 31 HOH HOH . E 3 HOH A 14 315 32 HOH HOH . E 3 HOH A 15 316 35 HOH HOH . E 3 HOH A 16 317 39 HOH HOH . E 3 HOH A 17 318 40 HOH HOH . E 3 HOH A 18 319 42 HOH HOH . E 3 HOH A 19 320 43 HOH HOH . E 3 HOH A 20 321 46 HOH HOH . E 3 HOH A 21 322 47 HOH HOH . E 3 HOH A 22 323 48 HOH HOH . E 3 HOH A 23 324 49 HOH HOH . E 3 HOH A 24 325 50 HOH HOH . E 3 HOH A 25 326 53 HOH HOH . E 3 HOH A 26 327 55 HOH HOH . E 3 HOH A 27 328 56 HOH HOH . E 3 HOH A 28 329 58 HOH HOH . E 3 HOH A 29 330 59 HOH HOH . E 3 HOH A 30 331 62 HOH HOH . E 3 HOH A 31 332 63 HOH HOH . E 3 HOH A 32 333 64 HOH HOH . E 3 HOH A 33 334 68 HOH HOH . E 3 HOH A 34 335 69 HOH HOH . E 3 HOH A 35 336 77 HOH HOH . E 3 HOH A 36 337 78 HOH HOH . E 3 HOH A 37 338 79 HOH HOH . E 3 HOH A 38 339 86 HOH HOH . E 3 HOH A 39 340 87 HOH HOH . E 3 HOH A 40 341 89 HOH HOH . E 3 HOH A 41 342 91 HOH HOH . E 3 HOH A 42 343 95 HOH HOH . E 3 HOH A 43 344 97 HOH HOH . E 3 HOH A 44 345 98 HOH HOH . E 3 HOH A 45 346 99 HOH HOH . E 3 HOH A 46 347 100 HOH HOH . E 3 HOH A 47 348 102 HOH HOH . E 3 HOH A 48 349 105 HOH HOH . E 3 HOH A 49 350 107 HOH HOH . E 3 HOH A 50 351 108 HOH HOH . E 3 HOH A 51 352 110 HOH HOH . E 3 HOH A 52 353 111 HOH HOH . E 3 HOH A 53 354 114 HOH HOH . E 3 HOH A 54 355 115 HOH HOH . E 3 HOH A 55 356 117 HOH HOH . E 3 HOH A 56 357 118 HOH HOH . E 3 HOH A 57 358 121 HOH HOH . E 3 HOH A 58 359 124 HOH HOH . E 3 HOH A 59 360 127 HOH HOH . E 3 HOH A 60 361 131 HOH HOH . E 3 HOH A 61 362 132 HOH HOH . E 3 HOH A 62 363 133 HOH HOH . E 3 HOH A 63 364 134 HOH HOH . E 3 HOH A 64 365 136 HOH HOH . E 3 HOH A 65 366 137 HOH HOH . E 3 HOH A 66 367 139 HOH HOH . E 3 HOH A 67 368 142 HOH HOH . E 3 HOH A 68 369 144 HOH HOH . E 3 HOH A 69 370 147 HOH HOH . E 3 HOH A 70 371 149 HOH HOH . E 3 HOH A 71 372 151 HOH HOH . E 3 HOH A 72 373 154 HOH HOH . E 3 HOH A 73 374 158 HOH HOH . E 3 HOH A 74 375 163 HOH HOH . E 3 HOH A 75 376 166 HOH HOH . E 3 HOH A 76 377 167 HOH HOH . E 3 HOH A 77 378 168 HOH HOH . E 3 HOH A 78 379 169 HOH HOH . E 3 HOH A 79 380 170 HOH HOH . E 3 HOH A 80 381 174 HOH HOH . E 3 HOH A 81 382 175 HOH HOH . E 3 HOH A 82 383 178 HOH HOH . E 3 HOH A 83 384 179 HOH HOH . F 3 HOH B 1 303 2 HOH HOH . F 3 HOH B 2 304 3 HOH HOH . F 3 HOH B 3 305 5 HOH HOH . F 3 HOH B 4 306 7 HOH HOH . F 3 HOH B 5 307 10 HOH HOH . F 3 HOH B 6 308 12 HOH HOH . F 3 HOH B 7 309 14 HOH HOH . F 3 HOH B 8 310 15 HOH HOH . F 3 HOH B 9 311 16 HOH HOH . F 3 HOH B 10 312 17 HOH HOH . F 3 HOH B 11 313 19 HOH HOH . F 3 HOH B 12 314 20 HOH HOH . F 3 HOH B 13 315 21 HOH HOH . F 3 HOH B 14 316 22 HOH HOH . F 3 HOH B 15 317 24 HOH HOH . F 3 HOH B 16 318 25 HOH HOH . F 3 HOH B 17 319 28 HOH HOH . F 3 HOH B 18 320 30 HOH HOH . F 3 HOH B 19 321 33 HOH HOH . F 3 HOH B 20 322 34 HOH HOH . F 3 HOH B 21 323 36 HOH HOH . F 3 HOH B 22 324 37 HOH HOH . F 3 HOH B 23 325 38 HOH HOH . F 3 HOH B 24 326 41 HOH HOH . F 3 HOH B 25 327 44 HOH HOH . F 3 HOH B 26 328 45 HOH HOH . F 3 HOH B 27 329 51 HOH HOH . F 3 HOH B 28 330 52 HOH HOH . F 3 HOH B 29 331 54 HOH HOH . F 3 HOH B 30 332 57 HOH HOH . F 3 HOH B 31 333 60 HOH HOH . F 3 HOH B 32 334 61 HOH HOH . F 3 HOH B 33 335 65 HOH HOH . F 3 HOH B 34 336 66 HOH HOH . F 3 HOH B 35 337 67 HOH HOH . F 3 HOH B 36 338 70 HOH HOH . F 3 HOH B 37 339 71 HOH HOH . F 3 HOH B 38 340 72 HOH HOH . F 3 HOH B 39 341 73 HOH HOH . F 3 HOH B 40 342 74 HOH HOH . F 3 HOH B 41 343 75 HOH HOH . F 3 HOH B 42 344 76 HOH HOH . F 3 HOH B 43 345 80 HOH HOH . F 3 HOH B 44 346 81 HOH HOH . F 3 HOH B 45 347 82 HOH HOH . F 3 HOH B 46 348 83 HOH HOH . F 3 HOH B 47 349 84 HOH HOH . F 3 HOH B 48 350 85 HOH HOH . F 3 HOH B 49 351 88 HOH HOH . F 3 HOH B 50 352 90 HOH HOH . F 3 HOH B 51 353 92 HOH HOH . F 3 HOH B 52 354 93 HOH HOH . F 3 HOH B 53 355 94 HOH HOH . F 3 HOH B 54 356 96 HOH HOH . F 3 HOH B 55 357 101 HOH HOH . F 3 HOH B 56 358 103 HOH HOH . F 3 HOH B 57 359 104 HOH HOH . F 3 HOH B 58 360 106 HOH HOH . F 3 HOH B 59 361 109 HOH HOH . F 3 HOH B 60 362 112 HOH HOH . F 3 HOH B 61 363 113 HOH HOH . F 3 HOH B 62 364 116 HOH HOH . F 3 HOH B 63 365 119 HOH HOH . F 3 HOH B 64 366 120 HOH HOH . F 3 HOH B 65 367 122 HOH HOH . F 3 HOH B 66 368 123 HOH HOH . F 3 HOH B 67 369 125 HOH HOH . F 3 HOH B 68 370 126 HOH HOH . F 3 HOH B 69 371 128 HOH HOH . F 3 HOH B 70 372 129 HOH HOH . F 3 HOH B 71 373 130 HOH HOH . F 3 HOH B 72 374 135 HOH HOH . F 3 HOH B 73 375 138 HOH HOH . F 3 HOH B 74 376 140 HOH HOH . F 3 HOH B 75 377 141 HOH HOH . F 3 HOH B 76 378 143 HOH HOH . F 3 HOH B 77 379 145 HOH HOH . F 3 HOH B 78 380 146 HOH HOH . F 3 HOH B 79 381 148 HOH HOH . F 3 HOH B 80 382 150 HOH HOH . F 3 HOH B 81 383 152 HOH HOH . F 3 HOH B 82 384 153 HOH HOH . F 3 HOH B 83 385 155 HOH HOH . F 3 HOH B 84 386 156 HOH HOH . F 3 HOH B 85 387 157 HOH HOH . F 3 HOH B 86 388 159 HOH HOH . F 3 HOH B 87 389 160 HOH HOH . F 3 HOH B 88 390 161 HOH HOH . F 3 HOH B 89 391 162 HOH HOH . F 3 HOH B 90 392 164 HOH HOH . F 3 HOH B 91 393 165 HOH HOH . F 3 HOH B 92 394 171 HOH HOH . F 3 HOH B 93 395 172 HOH HOH . F 3 HOH B 94 396 173 HOH HOH . F 3 HOH B 95 397 176 HOH HOH . F 3 HOH B 96 398 177 HOH HOH . F 3 HOH B 97 399 180 HOH HOH . F 3 HOH B 98 400 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GTB . . . D 2 20.536 -4.019 -16.847 1 15.84 ? N1 GTB 302 B 1 HETATM 2 C CA1 GTB . . . D 2 20.486 -5.436 -16.69 1 20.34 ? CA1 GTB 302 B 1 HETATM 3 C C1 GTB . . . D 2 20.491 -5.5 -15.145 1 18.19 ? C1 GTB 302 B 1 HETATM 4 O O11 GTB . . . D 2 20.899 -4.53 -14.488 1 17.06 ? O11 GTB 302 B 1 HETATM 5 O O12 GTB . . . D 2 20.078 -6.538 -14.576 1 18.68 ? O12 GTB 302 B 1 HETATM 6 C CB1 GTB . . . D 2 21.724 -6.064 -17.299 1 20.61 ? CB1 GTB 302 B 1 HETATM 7 C CG1 GTB . . . D 2 21.672 -7.598 -17.204 1 21.44 ? CG1 GTB 302 B 1 HETATM 8 C CD1 GTB . . . D 2 22.862 -8.336 -17.823 1 20.99 ? CD1 GTB 302 B 1 HETATM 9 O OE1 GTB . . . D 2 23.807 -7.749 -18.347 1 22.09 ? OE1 GTB 302 B 1 HETATM 10 N N2 GTB . . . D 2 22.681 -9.672 -17.715 1 20.76 ? N2 GTB 302 B 1 HETATM 11 C CA2 GTB . . . D 2 23.602 -10.707 -18.235 1 19.83 ? CA2 GTB 302 B 1 HETATM 12 C C2 GTB . . . D 2 22.858 -11.757 -19.061 1 19.99 ? C2 GTB 302 B 1 HETATM 13 O O2 GTB . . . D 2 21.732 -12.12 -18.654 1 18.94 ? O2 GTB 302 B 1 HETATM 14 C CB2 GTB . . . D 2 24.293 -11.433 -17.09 1 18.79 ? CB2 GTB 302 B 1 HETATM 15 S SG2 GTB . . . D 2 25.297 -10.352 -16.028 1 22.69 ? SG2 GTB 302 B 1 HETATM 16 N N3 GTB . . . D 2 23.447 -12.253 -20.175 1 17.56 ? N3 GTB 302 B 1 HETATM 17 C CA3 GTB . . . D 2 22.784 -13.278 -20.994 1 16.79 ? CA3 GTB 302 B 1 HETATM 18 C C3 GTB . . . D 2 22.197 -12.725 -22.283 1 17.46 ? C3 GTB 302 B 1 HETATM 19 O O31 GTB . . . D 2 21.794 -13.54 -23.117 1 19.04 ? O31 GTB 302 B 1 HETATM 20 O O32 GTB . . . D 2 22.141 -11.504 -22.439 1 16.45 ? O32 GTB 302 B 1 HETATM 21 C C' GTB . . . D 2 26.86 -10.501 -16.969 1 22.28 ? C' GTB 302 B 1 HETATM 22 C C1' GTB . . . D 2 27.284 -11.962 -17.136 1 27.43 ? C1' GTB 302 B 1 HETATM 23 C C2' GTB . . . D 2 27.486 -12.753 -15.972 1 27.64 ? C2' GTB 302 B 1 HETATM 24 C C3' GTB . . . D 2 27.859 -14.102 -16.084 1 30.15 ? C3' GTB 302 B 1 HETATM 25 C C4' GTB . . . D 2 28.059 -14.688 -17.368 1 32.53 ? C4' GTB 302 B 1 HETATM 26 N N41 GTB . . . D 2 28.454 -16.144 -17.469 1 34.35 ? N41 GTB 302 B 1 HETATM 27 O O41 GTB . . . D 2 28.618 -16.836 -16.468 1 34.97 ? O41 GTB 302 B 1 HETATM 28 O O42 GTB . . . D 2 28.619 -16.645 -18.56 1 37.86 ? O42 GTB 302 B 1 HETATM 29 C C5' GTB . . . D 2 27.856 -13.886 -18.548 1 32.95 ? C5' GTB 302 B 1 HETATM 30 C C6' GTB . . . D 2 27.477 -12.526 -18.431 1 27.9 ? C6' GTB 302 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #