data_2OAY
#
_model_server_result.job_id            AQ33pHt-fSH0oukaELsqkQ 
_model_server_result.datetime_utc      '2024-12-26 12:38:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2oay 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    2OAY 
#
_exptl.entry_id    2OAY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2OAY 
_cell.length_a            98.903 
_cell.length_b            98.903 
_cell.length_c            94.684 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OAY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 A CYS 101 1_555 A SG CYS 318 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 A SG CYS 20 A CYS 108 1_555 A SG CYS 95 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
covale ? covale1 A ND2 ASN 128 A ASN 216 1_555 B C1 NAG . A NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2OAY 
_atom_sites.fract_transf_matrix[1][1]    0.010111 
_atom_sites.fract_transf_matrix[1][2]    0.005838 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 500 500 NAG NAG . 
C 3 GOL A 1 5001 5001 GOL GOL . 
D 3 GOL A 1 5002 5002 GOL GOL . 
E 3 GOL A 1 5003 5003 GOL GOL . 
F 4 HOH A 1 1 1 HOH HOH . 
F 4 HOH A 2 2 2 HOH HOH . 
F 4 HOH A 3 3 3 HOH HOH . 
F 4 HOH A 4 4 4 HOH HOH . 
F 4 HOH A 5 5 5 HOH HOH . 
F 4 HOH A 6 6 6 HOH HOH . 
F 4 HOH A 7 7 7 HOH HOH . 
F 4 HOH A 8 8 8 HOH HOH . 
F 4 HOH A 9 9 9 HOH HOH . 
F 4 HOH A 10 10 10 HOH HOH . 
F 4 HOH A 11 11 11 HOH HOH . 
F 4 HOH A 12 12 12 HOH HOH . 
F 4 HOH A 13 13 13 HOH HOH . 
F 4 HOH A 14 14 14 HOH HOH . 
F 4 HOH A 15 15 15 HOH HOH . 
F 4 HOH A 16 16 16 HOH HOH . 
F 4 HOH A 17 17 17 HOH HOH . 
F 4 HOH A 18 18 18 HOH HOH . 
F 4 HOH A 19 19 19 HOH HOH . 
F 4 HOH A 20 20 20 HOH HOH . 
F 4 HOH A 21 21 21 HOH HOH . 
F 4 HOH A 22 22 22 HOH HOH . 
F 4 HOH A 23 23 23 HOH HOH . 
F 4 HOH A 24 24 24 HOH HOH . 
F 4 HOH A 25 25 25 HOH HOH . 
F 4 HOH A 26 26 26 HOH HOH . 
F 4 HOH A 27 27 27 HOH HOH . 
F 4 HOH A 28 28 28 HOH HOH . 
F 4 HOH A 29 29 29 HOH HOH . 
F 4 HOH A 30 30 30 HOH HOH . 
F 4 HOH A 31 31 31 HOH HOH . 
F 4 HOH A 32 32 32 HOH HOH . 
F 4 HOH A 33 33 33 HOH HOH . 
F 4 HOH A 34 34 34 HOH HOH . 
F 4 HOH A 35 35 35 HOH HOH . 
F 4 HOH A 36 36 36 HOH HOH . 
F 4 HOH A 37 37 37 HOH HOH . 
F 4 HOH A 38 38 38 HOH HOH . 
F 4 HOH A 39 39 39 HOH HOH . 
F 4 HOH A 40 40 40 HOH HOH . 
F 4 HOH A 41 41 41 HOH HOH . 
F 4 HOH A 42 42 42 HOH HOH . 
F 4 HOH A 43 43 43 HOH HOH . 
F 4 HOH A 44 44 44 HOH HOH . 
F 4 HOH A 45 45 45 HOH HOH . 
F 4 HOH A 46 46 46 HOH HOH . 
F 4 HOH A 47 47 47 HOH HOH . 
F 4 HOH A 48 48 48 HOH HOH . 
F 4 HOH A 49 49 49 HOH HOH . 
F 4 HOH A 50 50 50 HOH HOH . 
F 4 HOH A 51 51 51 HOH HOH . 
F 4 HOH A 52 52 52 HOH HOH . 
F 4 HOH A 53 53 53 HOH HOH . 
F 4 HOH A 54 54 54 HOH HOH . 
F 4 HOH A 55 55 55 HOH HOH . 
F 4 HOH A 56 56 56 HOH HOH . 
F 4 HOH A 57 57 57 HOH HOH . 
F 4 HOH A 58 58 58 HOH HOH . 
F 4 HOH A 59 59 59 HOH HOH . 
F 4 HOH A 60 60 60 HOH HOH . 
F 4 HOH A 61 61 61 HOH HOH . 
F 4 HOH A 62 62 62 HOH HOH . 
F 4 HOH A 63 63 63 HOH HOH . 
F 4 HOH A 64 64 64 HOH HOH . 
F 4 HOH A 65 65 65 HOH HOH . 
F 4 HOH A 66 66 66 HOH HOH . 
F 4 HOH A 67 67 67 HOH HOH . 
F 4 HOH A 68 68 68 HOH HOH . 
F 4 HOH A 69 69 69 HOH HOH . 
F 4 HOH A 70 70 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 -17.075 101.469 8.925 1 62.56 ? C1 NAG 500 A 1 
HETATM 2 C C2 NAG . . . B 2 -16.121 102.564 9.4 1 66.75 ? C2 NAG 500 A 1 
HETATM 3 C C3 NAG . . . B 2 -16.849 103.849 9.802 1 67.09 ? C3 NAG 500 A 1 
HETATM 4 C C4 NAG . . . B 2 -18.004 104.211 8.869 1 66.81 ? C4 NAG 500 A 1 
HETATM 5 C C5 NAG . . . B 2 -18.896 103.013 8.54 1 67.08 ? C5 NAG 500 A 1 
HETATM 6 C C6 NAG . . . B 2 -19.913 103.374 7.442 1 67.31 ? C6 NAG 500 A 1 
HETATM 7 C C7 NAG . . . B 2 -13.995 102.051 10.533 1 71.78 ? C7 NAG 500 A 1 
HETATM 8 C C8 NAG . . . B 2 -13.284 102.63 11.737 1 72.56 ? C8 NAG 500 A 1 
HETATM 9 N N2 NAG . . . B 2 -15.338 102.072 10.527 1 69.28 ? N2 NAG 500 A 1 
HETATM 10 O O3 NAG . . . B 2 -15.918 104.905 9.782 1 66.52 ? O3 NAG 500 A 1 
HETATM 11 O O4 NAG . . . B 2 -18.777 105.221 9.46 1 65.74 ? O4 NAG 500 A 1 
HETATM 12 O O5 NAG . . . B 2 -18.071 101.973 8.057 1 64.12 ? O5 NAG 500 A 1 
HETATM 13 O O6 NAG . . . B 2 -21.133 102.665 7.565 1 66.54 ? O6 NAG 500 A 1 
HETATM 14 O O7 NAG . . . B 2 -13.331 101.581 9.607 1 71.81 ? O7 NAG 500 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#