data_2OBJ # _model_server_result.job_id sbeOeKZ27j_mZyKkhgruvQ _model_server_result.datetime_utc '2024-12-26 17:20:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2obj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 2OBJ # _exptl.entry_id 2OBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(5-BROMO-2-HYDROXYPHENYL)-2-OXO-4-PHENYL-1,2-DIHYDROPYRIDINE-3-CARBONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OBJ _cell.length_a 97.264 _cell.length_b 97.264 _cell.length_c 80.827 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 280 A SER 260 1_555 A N SEP 281 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C SEP 281 A SEP 261 1_555 A N GLU 282 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C18 H11 Br N2 O2' _chem_comp.formula_weight 367.196 _chem_comp.id VRV _chem_comp.mon_nstd_flag . _chem_comp.name 6-(5-BROMO-2-HYDROXYPHENYL)-2-OXO-4-PHENYL-1,2-DIHYDROPYRIDINE-3-CARBONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 VRV sing 394 n y C1 C2 VRV doub 395 n y C1 H1 VRV sing 396 n n C2 C3 VRV sing 397 n y C2 H2 VRV sing 398 n n C3 C4 VRV doub 399 n y C3 O22 VRV sing 400 n n C4 C5 VRV sing 401 n y C4 C7 VRV sing 402 n y C5 C6 VRV doub 403 n y C5 H5 VRV sing 404 n n C6 BR23 VRV sing 405 n n C7 C12 VRV doub 406 n y C7 N8 VRV sing 407 n y N8 C9 VRV sing 408 n y N8 HN8 VRV sing 409 n n C9 C10 VRV sing 410 n y C9 O21 VRV doub 411 n n C10 C11 VRV doub 412 n y C10 C19 VRV sing 413 n n C11 C13 VRV sing 414 n y C11 C12 VRV sing 415 n y C12 H12 VRV sing 416 n n C13 C18 VRV doub 417 n y C13 C14 VRV sing 418 n y C14 C15 VRV doub 419 n y C14 H14 VRV sing 420 n n C15 C16 VRV sing 421 n y C15 H15 VRV sing 422 n n C16 C17 VRV doub 423 n y C16 H16 VRV sing 424 n n C17 C18 VRV sing 425 n y C17 H17 VRV sing 426 n n C18 H18 VRV sing 427 n n C19 N20 VRV trip 428 n n O22 HO22 VRV sing 429 n n # _atom_sites.entry_id 2OBJ _atom_sites.fract_transf_matrix[1][1] 0.010281 _atom_sites.fract_transf_matrix[1][2] 0.005936 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VRV A 1 400 400 VRV VRV . C 3 HOH A 1 401 1 HOH TIP . C 3 HOH A 2 402 2 HOH TIP . C 3 HOH A 3 403 3 HOH TIP . C 3 HOH A 4 404 4 HOH TIP . C 3 HOH A 5 405 5 HOH TIP . C 3 HOH A 6 406 6 HOH TIP . C 3 HOH A 7 407 7 HOH TIP . C 3 HOH A 8 408 8 HOH TIP . C 3 HOH A 9 409 9 HOH TIP . C 3 HOH A 10 410 10 HOH TIP . C 3 HOH A 11 411 11 HOH TIP . C 3 HOH A 12 412 12 HOH TIP . C 3 HOH A 13 413 13 HOH TIP . C 3 HOH A 14 414 14 HOH TIP . C 3 HOH A 15 415 15 HOH TIP . C 3 HOH A 16 416 16 HOH TIP . C 3 HOH A 17 417 17 HOH TIP . C 3 HOH A 18 418 18 HOH TIP . C 3 HOH A 19 419 19 HOH TIP . C 3 HOH A 20 420 20 HOH TIP . C 3 HOH A 21 421 21 HOH TIP . C 3 HOH A 22 422 22 HOH TIP . C 3 HOH A 23 423 23 HOH TIP . C 3 HOH A 24 424 24 HOH TIP . C 3 HOH A 25 425 25 HOH TIP . C 3 HOH A 26 426 26 HOH TIP . C 3 HOH A 27 427 27 HOH TIP . C 3 HOH A 28 428 28 HOH TIP . C 3 HOH A 29 429 29 HOH TIP . C 3 HOH A 30 430 30 HOH TIP . C 3 HOH A 31 431 31 HOH TIP . C 3 HOH A 32 432 32 HOH TIP . C 3 HOH A 33 433 33 HOH TIP . C 3 HOH A 34 434 34 HOH TIP . C 3 HOH A 35 435 35 HOH TIP . C 3 HOH A 36 436 36 HOH TIP . C 3 HOH A 37 437 37 HOH TIP . C 3 HOH A 38 438 38 HOH TIP . C 3 HOH A 39 439 39 HOH TIP . C 3 HOH A 40 440 40 HOH TIP . C 3 HOH A 41 441 41 HOH TIP . C 3 HOH A 42 442 42 HOH TIP . C 3 HOH A 43 443 43 HOH TIP . C 3 HOH A 44 444 44 HOH TIP . C 3 HOH A 45 445 45 HOH TIP . C 3 HOH A 46 446 46 HOH TIP . C 3 HOH A 47 447 47 HOH TIP . C 3 HOH A 48 448 48 HOH TIP . C 3 HOH A 49 449 49 HOH TIP . C 3 HOH A 50 450 50 HOH TIP . C 3 HOH A 51 451 51 HOH TIP . C 3 HOH A 52 452 52 HOH TIP . C 3 HOH A 53 453 53 HOH TIP . C 3 HOH A 54 454 54 HOH TIP . C 3 HOH A 55 455 55 HOH TIP . C 3 HOH A 56 456 56 HOH TIP . C 3 HOH A 57 457 57 HOH TIP . C 3 HOH A 58 458 58 HOH TIP . C 3 HOH A 59 459 59 HOH TIP . C 3 HOH A 60 460 60 HOH TIP . C 3 HOH A 61 461 61 HOH TIP . C 3 HOH A 62 462 62 HOH TIP . C 3 HOH A 63 463 63 HOH TIP . C 3 HOH A 64 464 64 HOH TIP . C 3 HOH A 65 465 65 HOH TIP . C 3 HOH A 66 466 66 HOH TIP . C 3 HOH A 67 467 67 HOH TIP . C 3 HOH A 68 468 68 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VRV . . . B 2 -20.805 38.962 1.947 1 81.59 ? C1 VRV 400 A 1 HETATM 2 C C2 VRV . . . B 2 -19.995 38.263 2.86 1 78.39 ? C2 VRV 400 A 1 HETATM 3 C C3 VRV . . . B 2 -19.12 37.249 2.399 1 77.12 ? C3 VRV 400 A 1 HETATM 4 C C4 VRV . . . B 2 -19.036 36.897 0.982 1 75.6 ? C4 VRV 400 A 1 HETATM 5 C C5 VRV . . . B 2 -19.889 37.648 0.106 1 80.02 ? C5 VRV 400 A 1 HETATM 6 C C6 VRV . . . B 2 -20.747 38.651 0.573 1 83.61 ? C6 VRV 400 A 1 HETATM 7 C C7 VRV . . . B 2 -18.171 35.886 0.471 1 73.46 ? C7 VRV 400 A 1 HETATM 8 N N8 VRV . . . B 2 -17.396 35.17 1.314 1 71.3 ? N8 VRV 400 A 1 HETATM 9 C C9 VRV . . . B 2 -16.557 34.213 0.963 1 70.15 ? C9 VRV 400 A 1 HETATM 10 C C10 VRV . . . B 2 -16.398 33.841 -0.414 1 71.06 ? C10 VRV 400 A 1 HETATM 11 C C11 VRV . . . B 2 -17.191 34.556 -1.423 1 71.37 ? C11 VRV 400 A 1 HETATM 12 C C12 VRV . . . B 2 -18.07 35.574 -0.94 1 71.72 ? C12 VRV 400 A 1 HETATM 13 C C13 VRV . . . B 2 -17.146 34.312 -2.814 1 72.66 ? C13 VRV 400 A 1 HETATM 14 C C14 VRV . . . B 2 -17.888 33.228 -3.418 1 73.31 ? C14 VRV 400 A 1 HETATM 15 C C15 VRV . . . B 2 -17.831 32.988 -4.816 1 73.1 ? C15 VRV 400 A 1 HETATM 16 C C16 VRV . . . B 2 -17.04 33.821 -5.642 1 73.67 ? C16 VRV 400 A 1 HETATM 17 C C17 VRV . . . B 2 -16.298 34.896 -5.086 1 74.23 ? C17 VRV 400 A 1 HETATM 18 C C18 VRV . . . B 2 -16.348 35.142 -3.692 1 73.26 ? C18 VRV 400 A 1 HETATM 19 C C19 VRV . . . B 2 -15.464 32.787 -0.721 1 71.97 ? C19 VRV 400 A 1 HETATM 20 N N20 VRV . . . B 2 -14.724 31.937 -0.986 1 72.96 ? N20 VRV 400 A 1 HETATM 21 O O21 VRV . . . B 2 -15.885 33.637 2.014 1 68.37 ? O21 VRV 400 A 1 HETATM 22 O O22 VRV . . . B 2 -18.375 36.64 3.378 1 77.82 ? O22 VRV 400 A 1 HETATM 23 BR BR23 VRV . . . B 2 -21.825 39.596 -0.691 1 98.43 ? BR23 VRV 400 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #