data_2OBL # _model_server_result.job_id XrIPLcgJrmCY28G9bDgFOQ _model_server_result.datetime_utc '2025-04-08 15:40:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2obl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1295}' # _entry.id 2OBL # _exptl.entry_id 2OBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OBL _cell.length_a 84.382 _cell.length_b 77.609 _cell.length_c 52.901 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 229 A ASN 328 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc2 A OD1 ASN 229 A ASN 328 2_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A OD1 ASP 234 A ASP 333 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc4 A OD2 ASP 234 A ASP 333 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc5 A OD1 ASP 234 A ASP 333 2_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 A OD2 ASP 234 A ASP 333 2_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc7 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc8 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1297 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 179 n y N1 C5 IMD sing 180 n y N1 HN1 IMD sing 181 n n C2 N3 IMD doub 182 n y C2 H2 IMD sing 183 n n N3 C4 IMD sing 184 n y N3 HN3 IMD sing 185 n n C4 C5 IMD doub 186 n y C4 H4 IMD sing 187 n n C5 H5 IMD sing 188 n n # _atom_sites.entry_id 2OBL _atom_sites.fract_transf_matrix[1][1] 0.011851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1001 1 CA CA . C 3 ACT A 1 1201 201 ACT ACT . D 4 IMD A 1 1295 295 IMD IMD . E 5 HOH A 1 1296 1 HOH HOH . E 5 HOH A 2 1297 2 HOH HOH . E 5 HOH A 3 1298 3 HOH HOH . E 5 HOH A 4 1299 4 HOH HOH . E 5 HOH A 5 1300 5 HOH HOH . E 5 HOH A 6 1301 6 HOH HOH . E 5 HOH A 7 1302 7 HOH HOH . E 5 HOH A 8 1303 8 HOH HOH . E 5 HOH A 9 1304 9 HOH HOH . E 5 HOH A 10 1305 10 HOH HOH . E 5 HOH A 11 1306 11 HOH HOH . E 5 HOH A 12 1307 12 HOH HOH . E 5 HOH A 13 1308 13 HOH HOH . E 5 HOH A 14 1309 14 HOH HOH . E 5 HOH A 15 1310 15 HOH HOH . E 5 HOH A 16 1311 16 HOH HOH . E 5 HOH A 17 1312 17 HOH HOH . E 5 HOH A 18 1313 18 HOH HOH . E 5 HOH A 19 1314 19 HOH HOH . E 5 HOH A 20 1315 20 HOH HOH . E 5 HOH A 21 1316 21 HOH HOH . E 5 HOH A 22 1317 22 HOH HOH . E 5 HOH A 23 1318 23 HOH HOH . E 5 HOH A 24 1319 24 HOH HOH . E 5 HOH A 25 1320 25 HOH HOH . E 5 HOH A 26 1321 26 HOH HOH . E 5 HOH A 27 1322 27 HOH HOH . E 5 HOH A 28 1323 28 HOH HOH . E 5 HOH A 29 1324 29 HOH HOH . E 5 HOH A 30 1325 30 HOH HOH . E 5 HOH A 31 1326 31 HOH HOH . E 5 HOH A 32 1327 32 HOH HOH . E 5 HOH A 33 1328 33 HOH HOH . E 5 HOH A 34 1329 34 HOH HOH . E 5 HOH A 35 1330 35 HOH HOH . E 5 HOH A 36 1331 36 HOH HOH . E 5 HOH A 37 1332 37 HOH HOH . E 5 HOH A 38 1333 38 HOH HOH . E 5 HOH A 39 1334 39 HOH HOH . E 5 HOH A 40 1335 40 HOH HOH . E 5 HOH A 41 1336 41 HOH HOH . E 5 HOH A 42 1337 42 HOH HOH . E 5 HOH A 43 1338 43 HOH HOH . E 5 HOH A 44 1339 44 HOH HOH . E 5 HOH A 45 1340 45 HOH HOH . E 5 HOH A 46 1341 46 HOH HOH . E 5 HOH A 47 1342 47 HOH HOH . E 5 HOH A 48 1343 48 HOH HOH . E 5 HOH A 49 1344 49 HOH HOH . E 5 HOH A 50 1345 50 HOH HOH . E 5 HOH A 51 1346 51 HOH HOH . E 5 HOH A 52 1347 52 HOH HOH . E 5 HOH A 53 1348 54 HOH HOH . E 5 HOH A 54 1349 55 HOH HOH . E 5 HOH A 55 1350 56 HOH HOH . E 5 HOH A 56 1351 57 HOH HOH . E 5 HOH A 57 1352 58 HOH HOH . E 5 HOH A 58 1353 59 HOH HOH . E 5 HOH A 59 1354 60 HOH HOH . E 5 HOH A 60 1355 61 HOH HOH . E 5 HOH A 61 1356 62 HOH HOH . E 5 HOH A 62 1357 63 HOH HOH . E 5 HOH A 63 1358 64 HOH HOH . E 5 HOH A 64 1359 65 HOH HOH . E 5 HOH A 65 1360 66 HOH HOH . E 5 HOH A 66 1361 67 HOH HOH . E 5 HOH A 67 1362 68 HOH HOH . E 5 HOH A 68 1363 69 HOH HOH . E 5 HOH A 69 1364 70 HOH HOH . E 5 HOH A 70 1365 71 HOH HOH . E 5 HOH A 71 1366 72 HOH HOH . E 5 HOH A 72 1367 73 HOH HOH . E 5 HOH A 73 1368 74 HOH HOH . E 5 HOH A 74 1369 75 HOH HOH . E 5 HOH A 75 1370 76 HOH HOH . E 5 HOH A 76 1371 77 HOH HOH . E 5 HOH A 77 1372 78 HOH HOH . E 5 HOH A 78 1373 79 HOH HOH . E 5 HOH A 79 1374 80 HOH HOH . E 5 HOH A 80 1375 81 HOH HOH . E 5 HOH A 81 1376 82 HOH HOH . E 5 HOH A 82 1377 83 HOH HOH . E 5 HOH A 83 1378 84 HOH HOH . E 5 HOH A 84 1379 85 HOH HOH . E 5 HOH A 85 1380 86 HOH HOH . E 5 HOH A 86 1381 87 HOH HOH . E 5 HOH A 87 1382 88 HOH HOH . E 5 HOH A 88 1383 89 HOH HOH . E 5 HOH A 89 1384 90 HOH HOH . E 5 HOH A 90 1385 91 HOH HOH . E 5 HOH A 91 1386 92 HOH HOH . E 5 HOH A 92 1387 93 HOH HOH . E 5 HOH A 93 1388 94 HOH HOH . E 5 HOH A 94 1389 95 HOH HOH . E 5 HOH A 95 1390 96 HOH HOH . E 5 HOH A 96 1391 97 HOH HOH . E 5 HOH A 97 1392 98 HOH HOH . E 5 HOH A 98 1393 100 HOH HOH . E 5 HOH A 99 1394 102 HOH HOH . E 5 HOH A 100 1395 103 HOH HOH . E 5 HOH A 101 1396 104 HOH HOH . E 5 HOH A 102 1397 105 HOH HOH . E 5 HOH A 103 1398 106 HOH HOH . E 5 HOH A 104 1399 107 HOH HOH . E 5 HOH A 105 1400 108 HOH HOH . E 5 HOH A 106 1401 109 HOH HOH . E 5 HOH A 107 1402 110 HOH HOH . E 5 HOH A 108 1403 111 HOH HOH . E 5 HOH A 109 1404 112 HOH HOH . E 5 HOH A 110 1405 113 HOH HOH . E 5 HOH A 111 1406 114 HOH HOH . E 5 HOH A 112 1407 115 HOH HOH . E 5 HOH A 113 1408 116 HOH HOH . E 5 HOH A 114 1409 117 HOH HOH . E 5 HOH A 115 1410 118 HOH HOH . E 5 HOH A 116 1411 119 HOH HOH . E 5 HOH A 117 1412 120 HOH HOH . E 5 HOH A 118 1413 122 HOH HOH . E 5 HOH A 119 1414 123 HOH HOH . E 5 HOH A 120 1415 124 HOH HOH . E 5 HOH A 121 1416 125 HOH HOH . E 5 HOH A 122 1417 126 HOH HOH . E 5 HOH A 123 1418 127 HOH HOH . E 5 HOH A 124 1419 128 HOH HOH . E 5 HOH A 125 1420 129 HOH HOH . E 5 HOH A 126 1421 130 HOH HOH . E 5 HOH A 127 1422 131 HOH HOH . E 5 HOH A 128 1423 132 HOH HOH . E 5 HOH A 129 1424 133 HOH HOH . E 5 HOH A 130 1425 134 HOH HOH . E 5 HOH A 131 1426 135 HOH HOH . E 5 HOH A 132 1427 136 HOH HOH . E 5 HOH A 133 1428 137 HOH HOH . E 5 HOH A 134 1429 138 HOH HOH . E 5 HOH A 135 1430 139 HOH HOH . E 5 HOH A 136 1431 140 HOH HOH . E 5 HOH A 137 1432 141 HOH HOH . E 5 HOH A 138 1433 142 HOH HOH . E 5 HOH A 139 1434 143 HOH HOH . E 5 HOH A 140 1435 144 HOH HOH . E 5 HOH A 141 1436 145 HOH HOH . E 5 HOH A 142 1437 146 HOH HOH . E 5 HOH A 143 1438 147 HOH HOH . E 5 HOH A 144 1439 148 HOH HOH . E 5 HOH A 145 1440 149 HOH HOH . E 5 HOH A 146 1441 150 HOH HOH . E 5 HOH A 147 1442 151 HOH HOH . E 5 HOH A 148 1443 152 HOH HOH . E 5 HOH A 149 1444 154 HOH HOH . E 5 HOH A 150 1445 155 HOH HOH . E 5 HOH A 151 1446 156 HOH HOH . E 5 HOH A 152 1447 157 HOH HOH . E 5 HOH A 153 1448 158 HOH HOH . E 5 HOH A 154 1449 159 HOH HOH . E 5 HOH A 155 1450 160 HOH HOH . E 5 HOH A 156 1451 161 HOH HOH . E 5 HOH A 157 1452 163 HOH HOH . E 5 HOH A 158 1453 164 HOH HOH . E 5 HOH A 159 1454 165 HOH HOH . E 5 HOH A 160 1455 166 HOH HOH . E 5 HOH A 161 1456 167 HOH HOH . E 5 HOH A 162 1457 168 HOH HOH . E 5 HOH A 163 1458 169 HOH HOH . E 5 HOH A 164 1459 171 HOH HOH . E 5 HOH A 165 1460 172 HOH HOH . E 5 HOH A 166 1461 173 HOH HOH . E 5 HOH A 167 1462 174 HOH HOH . E 5 HOH A 168 1463 175 HOH HOH . E 5 HOH A 169 1464 176 HOH HOH . E 5 HOH A 170 1465 177 HOH HOH . E 5 HOH A 171 1466 178 HOH HOH . E 5 HOH A 172 1467 179 HOH HOH . E 5 HOH A 173 1468 180 HOH HOH . E 5 HOH A 174 1469 181 HOH HOH . E 5 HOH A 175 1470 182 HOH HOH . E 5 HOH A 176 1471 183 HOH HOH . E 5 HOH A 177 1472 185 HOH HOH . E 5 HOH A 178 1473 186 HOH HOH . E 5 HOH A 179 1474 187 HOH HOH . E 5 HOH A 180 1475 188 HOH HOH . E 5 HOH A 181 1476 191 HOH HOH . E 5 HOH A 182 1477 193 HOH HOH . E 5 HOH A 183 1478 194 HOH HOH . E 5 HOH A 184 1479 195 HOH HOH . E 5 HOH A 185 1480 196 HOH HOH . E 5 HOH A 186 1481 197 HOH HOH . E 5 HOH A 187 1482 198 HOH HOH . E 5 HOH A 188 1483 199 HOH HOH . E 5 HOH A 189 1484 200 HOH HOH . E 5 HOH A 190 1485 203 HOH HOH . E 5 HOH A 191 1486 205 HOH HOH . E 5 HOH A 192 1487 206 HOH HOH . E 5 HOH A 193 1488 207 HOH HOH . E 5 HOH A 194 1489 208 HOH HOH . E 5 HOH A 195 1490 209 HOH HOH . E 5 HOH A 196 1491 210 HOH HOH . E 5 HOH A 197 1492 211 HOH HOH . E 5 HOH A 198 1493 212 HOH HOH . E 5 HOH A 199 1494 213 HOH HOH . E 5 HOH A 200 1495 214 HOH HOH . E 5 HOH A 201 1496 215 HOH HOH . E 5 HOH A 202 1497 217 HOH HOH . E 5 HOH A 203 1498 218 HOH HOH . E 5 HOH A 204 1499 219 HOH HOH . E 5 HOH A 205 1500 220 HOH HOH . E 5 HOH A 206 1501 229 HOH HOH . E 5 HOH A 207 1502 231 HOH HOH . E 5 HOH A 208 1503 232 HOH HOH . E 5 HOH A 209 1504 236 HOH HOH . E 5 HOH A 210 1505 237 HOH HOH . E 5 HOH A 211 1506 238 HOH HOH . E 5 HOH A 212 1507 239 HOH HOH . E 5 HOH A 213 1508 240 HOH HOH . E 5 HOH A 214 1509 242 HOH HOH . E 5 HOH A 215 1510 243 HOH HOH . E 5 HOH A 216 1511 245 HOH HOH . E 5 HOH A 217 1512 246 HOH HOH . E 5 HOH A 218 1513 247 HOH HOH . E 5 HOH A 219 1514 248 HOH HOH . E 5 HOH A 220 1515 250 HOH HOH . E 5 HOH A 221 1516 252 HOH HOH . E 5 HOH A 222 1517 253 HOH HOH . E 5 HOH A 223 1518 254 HOH HOH . E 5 HOH A 224 1519 255 HOH HOH . E 5 HOH A 225 1520 257 HOH HOH . E 5 HOH A 226 1521 258 HOH HOH . E 5 HOH A 227 1522 259 HOH HOH . E 5 HOH A 228 1523 260 HOH HOH . E 5 HOH A 229 1524 261 HOH HOH . E 5 HOH A 230 1525 262 HOH HOH . E 5 HOH A 231 1526 263 HOH HOH . E 5 HOH A 232 1527 265 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 4 23.119 2.761 1.526 1 29.33 ? N1 IMD 1295 A 1 HETATM 2 C C2 IMD . . . D 4 21.987 2.715 2.262 1 28.24 ? C2 IMD 1295 A 1 HETATM 3 N N3 IMD . . . D 4 21.713 3.978 2.679 1 29.78 ? N3 IMD 1295 A 1 HETATM 4 C C4 IMD . . . D 4 22.672 4.816 2.208 1 29.18 ? C4 IMD 1295 A 1 HETATM 5 C C5 IMD . . . D 4 23.566 4.043 1.483 1 29.06 ? C5 IMD 1295 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #