data_2OBM
#
_model_server_result.job_id            wuhEFidZeqrJldZDWXsZ9Q 
_model_server_result.datetime_utc      '2025-04-12 02:32:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2obm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":600}' 
#
_entry.id    2OBM 
#
_exptl.entry_id    2OBM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OBM 
_cell.length_a            84.131 
_cell.length_b            78.69 
_cell.length_c            53.07 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 229 A ASN 328 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc2 A OD1 ASN 229 A ASN 328 2_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc3 A OD1 ASP 234 A ASP 333 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc4 A OD1 ASP 234 A ASP 333 2_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc5 B CA CA . A CA 1001 1_555 D O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc6 B CA CA . A CA 1001 1_555 D O HOH . A HOH 1003 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2OBM 
_atom_sites.fract_transf_matrix[1][1]    0.011886 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1001 1001 CA CA . 
C 3 ADP A 1 600 600 ADP ADP . 
D 4 HOH A 1 1002 1 HOH HOH . 
D 4 HOH A 2 1003 2 HOH HOH . 
D 4 HOH A 3 1004 3 HOH HOH . 
D 4 HOH A 4 1005 4 HOH HOH . 
D 4 HOH A 5 1006 5 HOH HOH . 
D 4 HOH A 6 1007 7 HOH HOH . 
D 4 HOH A 7 1008 8 HOH HOH . 
D 4 HOH A 8 1009 9 HOH HOH . 
D 4 HOH A 9 1010 10 HOH HOH . 
D 4 HOH A 10 1011 11 HOH HOH . 
D 4 HOH A 11 1012 12 HOH HOH . 
D 4 HOH A 12 1013 14 HOH HOH . 
D 4 HOH A 13 1014 15 HOH HOH . 
D 4 HOH A 14 1015 16 HOH HOH . 
D 4 HOH A 15 1016 19 HOH HOH . 
D 4 HOH A 16 1017 20 HOH HOH . 
D 4 HOH A 17 1018 21 HOH HOH . 
D 4 HOH A 18 1019 22 HOH HOH . 
D 4 HOH A 19 1020 23 HOH HOH . 
D 4 HOH A 20 1021 24 HOH HOH . 
D 4 HOH A 21 1022 26 HOH HOH . 
D 4 HOH A 22 1023 29 HOH HOH . 
D 4 HOH A 23 1024 31 HOH HOH . 
D 4 HOH A 24 1025 34 HOH HOH . 
D 4 HOH A 25 1026 35 HOH HOH . 
D 4 HOH A 26 1027 36 HOH HOH . 
D 4 HOH A 27 1028 37 HOH HOH . 
D 4 HOH A 28 1029 38 HOH HOH . 
D 4 HOH A 29 1030 39 HOH HOH . 
D 4 HOH A 30 1031 41 HOH HOH . 
D 4 HOH A 31 1032 42 HOH HOH . 
D 4 HOH A 32 1033 43 HOH HOH . 
D 4 HOH A 33 1034 44 HOH HOH . 
D 4 HOH A 34 1035 45 HOH HOH . 
D 4 HOH A 35 1036 46 HOH HOH . 
D 4 HOH A 36 1037 51 HOH HOH . 
D 4 HOH A 37 1038 54 HOH HOH . 
D 4 HOH A 38 1039 57 HOH HOH . 
D 4 HOH A 39 1040 62 HOH HOH . 
D 4 HOH A 40 1041 65 HOH HOH . 
D 4 HOH A 41 1042 68 HOH HOH . 
D 4 HOH A 42 1043 72 HOH HOH . 
D 4 HOH A 43 1044 77 HOH HOH . 
D 4 HOH A 44 1045 80 HOH HOH . 
D 4 HOH A 45 1046 81 HOH HOH . 
D 4 HOH A 46 1047 84 HOH HOH . 
D 4 HOH A 47 1048 86 HOH HOH . 
D 4 HOH A 48 1049 87 HOH HOH . 
D 4 HOH A 49 1050 88 HOH HOH . 
D 4 HOH A 50 1051 91 HOH HOH . 
D 4 HOH A 51 1052 95 HOH HOH . 
D 4 HOH A 52 1053 109 HOH HOH . 
D 4 HOH A 53 1054 112 HOH HOH . 
D 4 HOH A 54 1055 114 HOH HOH . 
D 4 HOH A 55 1056 117 HOH HOH . 
D 4 HOH A 56 1057 142 HOH HOH . 
D 4 HOH A 57 1058 147 HOH HOH . 
D 4 HOH A 58 1059 155 HOH HOH . 
D 4 HOH A 59 1060 156 HOH HOH . 
D 4 HOH A 60 1061 157 HOH HOH . 
D 4 HOH A 61 1062 158 HOH HOH . 
D 4 HOH A 62 1063 163 HOH HOH . 
D 4 HOH A 63 1064 172 HOH HOH . 
D 4 HOH A 64 1065 173 HOH HOH . 
D 4 HOH A 65 1066 174 HOH HOH . 
D 4 HOH A 66 1067 175 HOH HOH . 
D 4 HOH A 67 1068 176 HOH HOH . 
D 4 HOH A 68 1069 186 HOH HOH . 
D 4 HOH A 69 1070 188 HOH HOH . 
D 4 HOH A 70 1071 197 HOH HOH . 
D 4 HOH A 71 1072 203 HOH HOH . 
D 4 HOH A 72 1073 212 HOH HOH . 
D 4 HOH A 73 1074 229 HOH HOH . 
D 4 HOH A 74 1075 242 HOH HOH . 
D 4 HOH A 75 1076 243 HOH HOH . 
D 4 HOH A 76 1077 245 HOH HOH . 
D 4 HOH A 77 1078 247 HOH HOH . 
D 4 HOH A 78 1079 248 HOH HOH . 
D 4 HOH A 79 1080 250 HOH HOH . 
D 4 HOH A 80 1081 251 HOH HOH . 
D 4 HOH A 81 1082 252 HOH HOH . 
D 4 HOH A 82 1083 254 HOH HOH . 
D 4 HOH A 83 1084 256 HOH HOH . 
D 4 HOH A 84 1085 260 HOH HOH . 
D 4 HOH A 85 1086 261 HOH HOH . 
D 4 HOH A 86 1087 262 HOH HOH . 
D 4 HOH A 87 1088 266 HOH HOH . 
D 4 HOH A 88 1089 267 HOH HOH . 
D 4 HOH A 89 1090 268 HOH HOH . 
D 4 HOH A 90 1091 269 HOH HOH . 
D 4 HOH A 91 1092 270 HOH HOH . 
D 4 HOH A 92 1093 271 HOH HOH . 
D 4 HOH A 93 1094 273 HOH HOH . 
D 4 HOH A 94 1095 274 HOH HOH . 
D 4 HOH A 95 1096 275 HOH HOH . 
D 4 HOH A 96 1097 276 HOH HOH . 
D 4 HOH A 97 1098 278 HOH HOH . 
D 4 HOH A 98 1099 279 HOH HOH . 
D 4 HOH A 99 1100 280 HOH HOH . 
D 4 HOH A 100 1101 281 HOH HOH . 
D 4 HOH A 101 1102 282 HOH HOH . 
D 4 HOH A 102 1103 283 HOH HOH . 
D 4 HOH A 103 1104 284 HOH HOH . 
D 4 HOH A 104 1105 286 HOH HOH . 
D 4 HOH A 105 1106 287 HOH HOH . 
D 4 HOH A 106 1107 288 HOH HOH . 
D 4 HOH A 107 1108 291 HOH HOH . 
D 4 HOH A 108 1109 292 HOH HOH . 
D 4 HOH A 109 1110 293 HOH HOH . 
D 4 HOH A 110 1111 294 HOH HOH . 
D 4 HOH A 111 1112 295 HOH HOH . 
D 4 HOH A 112 1113 296 HOH HOH . 
D 4 HOH A 113 1114 297 HOH HOH . 
D 4 HOH A 114 1115 298 HOH HOH . 
D 4 HOH A 115 1116 299 HOH HOH . 
D 4 HOH A 116 1117 300 HOH HOH . 
D 4 HOH A 117 1118 305 HOH HOH . 
D 4 HOH A 118 1119 306 HOH HOH . 
D 4 HOH A 119 1120 308 HOH HOH . 
D 4 HOH A 120 1121 309 HOH HOH . 
D 4 HOH A 121 1122 310 HOH HOH . 
D 4 HOH A 122 1123 311 HOH HOH . 
D 4 HOH A 123 1124 312 HOH HOH . 
D 4 HOH A 124 1125 313 HOH HOH . 
D 4 HOH A 125 1126 314 HOH HOH . 
D 4 HOH A 126 1127 315 HOH HOH . 
D 4 HOH A 127 1128 317 HOH HOH . 
D 4 HOH A 128 1129 319 HOH HOH . 
D 4 HOH A 129 1130 320 HOH HOH . 
D 4 HOH A 130 1131 321 HOH HOH . 
D 4 HOH A 131 1132 322 HOH HOH . 
D 4 HOH A 132 1133 323 HOH HOH . 
D 4 HOH A 133 1134 325 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 18.542 12.029 0.11 1 65.77 ? PB ADP 600 A 1 
HETATM 2 O O1B ADP . . . C 3 18.102 12.118 -1.337 0.75 65.84 ? O1B ADP 600 A 1 
HETATM 3 O O2B ADP . . . C 3 17.708 11.258 1.108 0.75 65.17 ? O2B ADP 600 A 1 
HETATM 4 O O3B ADP . . . C 3 20.029 11.399 0.137 0.75 65.6 ? O3B ADP 600 A 1 
HETATM 5 P PA ADP . . . C 3 19.992 14.062 1.5 1 63.56 ? PA ADP 600 A 1 
HETATM 6 O O1A ADP . . . C 3 19.853 13.555 2.911 0.75 63.79 ? O1A ADP 600 A 1 
HETATM 7 O O2A ADP . . . C 3 21.278 13.818 0.744 0.75 63.99 ? O2A ADP 600 A 1 
HETATM 8 O O3A ADP . . . C 3 18.734 13.548 0.625 0.75 64.64 ? O3A ADP 600 A 1 
HETATM 9 O O5' ADP . . . C 3 19.72 15.647 1.501 0.75 63.22 ? O5' ADP 600 A 1 
HETATM 10 C C5' ADP . . . C 3 19.407 16.306 0.275 0.75 62.2 ? C5' ADP 600 A 1 
HETATM 11 C C4' ADP . . . C 3 20.114 17.654 0.227 0.75 61.47 ? C4' ADP 600 A 1 
HETATM 12 O O4' ADP . . . C 3 19.195 18.668 0.634 0.75 60.87 ? O4' ADP 600 A 1 
HETATM 13 C C3' ADP . . . C 3 21.298 17.723 1.184 0.75 61.2 ? C3' ADP 600 A 1 
HETATM 14 O O3' ADP . . . C 3 22.545 17.518 0.514 0.75 61.37 ? O3' ADP 600 A 1 
HETATM 15 C C2' ADP . . . C 3 21.21 19.105 1.8 0.75 61.12 ? C2' ADP 600 A 1 
HETATM 16 O O2' ADP . . . C 3 21.973 20.079 1.074 0.75 61.31 ? O2' ADP 600 A 1 
HETATM 17 C C1' ADP . . . C 3 19.733 19.443 1.712 0.75 60.52 ? C1' ADP 600 A 1 
HETATM 18 N N9 ADP . . . C 3 19.12 19.073 3.015 1 60.15 ? N9 ADP 600 A 1 
HETATM 19 C C8 ADP . . . C 3 18.353 17.996 3.275 1 60.02 ? C8 ADP 600 A 1 
HETATM 20 N N7 ADP . . . C 3 17.975 17.978 4.578 1 60.03 ? N7 ADP 600 A 1 
HETATM 21 C C5 ADP . . . C 3 18.512 19.059 5.18 1 60.03 ? C5 ADP 600 A 1 
HETATM 22 C C6 ADP . . . C 3 18.515 19.645 6.545 1 60.05 ? C6 ADP 600 A 1 
HETATM 23 N N6 ADP . . . C 3 17.856 19.065 7.578 1 60.01 ? N6 ADP 600 A 1 
HETATM 24 N N1 ADP . . . C 3 19.204 20.79 6.73 1 60.19 ? N1 ADP 600 A 1 
HETATM 25 C C2 ADP . . . C 3 19.874 21.39 5.729 1 60.19 ? C2 ADP 600 A 1 
HETATM 26 N N3 ADP . . . C 3 19.913 20.914 4.471 1 60.12 ? N3 ADP 600 A 1 
HETATM 27 C C4 ADP . . . C 3 19.265 19.773 4.14 1 59.95 ? C4 ADP 600 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#