data_2OBY
#
_model_server_result.job_id            44PueOuHfx_vWHX53QtthA 
_model_server_result.datetime_utc      '2025-02-16 22:03:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2oby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1403}' 
#
_entry.id    2OBY 
#
_exptl.entry_id    2OBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OBY 
_cell.length_a            68.354 
_cell.length_b            184.359 
_cell.length_c            318.047 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,K 1 1 
C,H,L 2 1,2 
D,I 3 1,3 
E,J,M 4 1,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -159.0235 
4 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 68.354 0 -159.0235 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     2OBY 
_atom_sites.fract_transf_matrix[1][1]    0.01463 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005424 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003144 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NAP A 1 1400 400 NAP NAP . 
G 2 NAP B 1 1401 400 NAP NAP . 
H 2 NAP C 1 1402 400 NAP NAP . 
I 2 NAP D 1 1403 400 NAP NAP . 
J 2 NAP E 1 1404 400 NAP NAP . 
K 3 HOH A 1 401 401 HOH HOH . 
L 3 HOH C 1 402 402 HOH HOH . 
M 3 HOH E 1 403 403 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . I 2 -16.542 31.925 -61.834 1 49.33 ? PA NAP 1403 D 1 
HETATM 2 O O1A NAP . . . I 2 -16.141 31.221 -60.598 1 49.37 ? O1A NAP 1403 D 1 
HETATM 3 O O2A NAP . . . I 2 -17.472 33.038 -61.533 1 49.23 ? O2A NAP 1403 D 1 
HETATM 4 O O5B NAP . . . I 2 -17.216 30.862 -62.837 1 48.93 ? O5B NAP 1403 D 1 
HETATM 5 C C5B NAP . . . I 2 -16.472 30.191 -63.828 1 48.65 ? C5B NAP 1403 D 1 
HETATM 6 C C4B NAP . . . I 2 -17.449 29.642 -64.851 1 48.51 ? C4B NAP 1403 D 1 
HETATM 7 O O4B NAP . . . I 2 -16.753 29.036 -65.917 1 48.33 ? O4B NAP 1403 D 1 
HETATM 8 C C3B NAP . . . I 2 -18.367 28.581 -64.265 1 48.67 ? C3B NAP 1403 D 1 
HETATM 9 O O3B NAP . . . I 2 -19.564 29.139 -63.765 1 48.76 ? O3B NAP 1403 D 1 
HETATM 10 C C2B NAP . . . I 2 -18.61 27.64 -65.429 1 48.57 ? C2B NAP 1403 D 1 
HETATM 11 O O2B NAP . . . I 2 -19.864 27.907 -66.014 1 48.23 ? O2B NAP 1403 D 1 
HETATM 12 C C1B NAP . . . I 2 -17.47 27.92 -66.405 1 48.53 ? C1B NAP 1403 D 1 
HETATM 13 N N9A NAP . . . I 2 -16.562 26.764 -66.496 1 48.57 ? N9A NAP 1403 D 1 
HETATM 14 C C8A NAP . . . I 2 -15.849 26.212 -65.463 1 48.68 ? C8A NAP 1403 D 1 
HETATM 15 N N7A NAP . . . I 2 -15.13 25.168 -65.938 1 48.66 ? N7A NAP 1403 D 1 
HETATM 16 C C5A NAP . . . I 2 -15.378 25.049 -67.258 1 48.63 ? C5A NAP 1403 D 1 
HETATM 17 C C6A NAP . . . I 2 -14.909 24.159 -68.21 1 48.57 ? C6A NAP 1403 D 1 
HETATM 18 N N6A NAP . . . I 2 -14.05 23.21 -67.856 1 48.55 ? N6A NAP 1403 D 1 
HETATM 19 N N1A NAP . . . I 2 -15.343 24.273 -69.518 1 48.61 ? N1A NAP 1403 D 1 
HETATM 20 C C2A NAP . . . I 2 -16.237 25.269 -69.869 1 48.53 ? C2A NAP 1403 D 1 
HETATM 21 N N3A NAP . . . I 2 -16.699 26.153 -68.912 1 48.46 ? N3A NAP 1403 D 1 
HETATM 22 C C4A NAP . . . I 2 -16.276 26.045 -67.627 1 48.56 ? C4A NAP 1403 D 1 
HETATM 23 O O3 NAP . . . I 2 -15.241 32.473 -62.603 1 48.44 ? O3 NAP 1403 D 1 
HETATM 24 P PN NAP . . . I 2 -14.364 33.79 -62.343 1 48.57 ? PN NAP 1403 D 1 
HETATM 25 O O1N NAP . . . I 2 -13.914 33.749 -60.937 1 48.8 ? O1N NAP 1403 D 1 
HETATM 26 O O2N NAP . . . I 2 -15.1 34.983 -62.82 1 48.64 ? O2N NAP 1403 D 1 
HETATM 27 O O5D NAP . . . I 2 -13.082 33.562 -63.294 1 48.65 ? O5D NAP 1403 D 1 
HETATM 28 C C5D NAP . . . I 2 -13.194 32.921 -64.547 1 48.53 ? C5D NAP 1403 D 1 
HETATM 29 C C4D NAP . . . I 2 -11.804 32.677 -65.117 1 48.67 ? C4D NAP 1403 D 1 
HETATM 30 O O4D NAP . . . I 2 -11.129 33.909 -65.273 1 48.82 ? O4D NAP 1403 D 1 
HETATM 31 C C3D NAP . . . I 2 -10.949 31.818 -64.193 1 48.96 ? C3D NAP 1403 D 1 
HETATM 32 O O3D NAP . . . I 2 -10.373 30.736 -64.893 1 49.25 ? O3D NAP 1403 D 1 
HETATM 33 C C2D NAP . . . I 2 -9.883 32.76 -63.662 1 48.97 ? C2D NAP 1403 D 1 
HETATM 34 O O2D NAP . . . I 2 -8.63 32.139 -63.464 1 49.24 ? O2D NAP 1403 D 1 
HETATM 35 C C1D NAP . . . I 2 -9.811 33.796 -64.765 1 49.07 ? C1D NAP 1403 D 1 
HETATM 36 N N1N NAP . . . I 2 -9.287 35.09 -64.287 1 49.3 ? N1N NAP 1403 D 1 
HETATM 37 C C2N NAP . . . I 2 -8.001 35.429 -64.612 1 49.22 ? C2N NAP 1403 D 1 
HETATM 38 C C3N NAP . . . I 2 -7.472 36.647 -64.196 1 49.36 ? C3N NAP 1403 D 1 
HETATM 39 C C7N NAP . . . I 2 -6.216 37.163 -64.838 1 49.35 ? C7N NAP 1403 D 1 
HETATM 40 O O7N NAP . . . I 2 -5.473 38.171 -64.188 1 49.84 ? O7N NAP 1403 D 1 
HETATM 41 N N7N NAP . . . I 2 -5.825 36.666 -66.011 1 49 ? N7N NAP 1403 D 1 
HETATM 42 C C4N NAP . . . I 2 -8.257 37.508 -63.431 1 49.29 ? C4N NAP 1403 D 1 
HETATM 43 C C5N NAP . . . I 2 -9.561 37.149 -63.1 1 49.32 ? C5N NAP 1403 D 1 
HETATM 44 C C6N NAP . . . I 2 -10.071 35.928 -63.537 1 49.4 ? C6N NAP 1403 D 1 
HETATM 45 P P2B NAP . . . I 2 -20.525 26.913 -67.088 1 48.02 ? P2B NAP 1403 D 1 
HETATM 46 O O1X NAP . . . I 2 -19.564 25.789 -67.392 1 48.09 ? O1X NAP 1403 D 1 
HETATM 47 O O2X NAP . . . I 2 -21.818 26.368 -66.53 1 48.1 ? O2X NAP 1403 D 1 
HETATM 48 O O3X NAP . . . I 2 -20.803 27.688 -68.351 1 48.26 ? O3X NAP 1403 D 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#