data_2OC2 # _model_server_result.job_id Ip8cWGtKMPtCSk8smo1idw _model_server_result.datetime_utc '2025-02-27 16:51:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":680}' # _entry.id 2OC2 # _exptl.entry_id 2OC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 617.629 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-({(1S,2R)-2-[(S)-[(1R)-1-{[(BENZYLOXY)CARBONYL]AMINO}-2-PHENYLETHYL](HYDROXY)PHOSPHORYL]CYCLOPENTYL}CARBONYL)-L-TRYPT OPHAN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OC2 _cell.length_a 56.514 _cell.length_b 84.763 _cell.length_c 133.483 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 152 1_555 A SG CYS 122 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 316 A CYS 352 1_555 A SG CYS 334 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 502 A CYS 538 1_555 A SG CYS 514 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A NE2 HIS 347 A HIS 383 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A NE2 HIS 351 A HIS 387 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 A OE1 GLU 375 A GLU 411 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc4 E O3 RX3 . A RX3 680 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc5 E O4 RX3 . A RX3 680 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'C33 H36 N3 O7 P' _chem_comp.formula_weight 617.629 _chem_comp.id RX3 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-({(1S,2R)-2-[(S)-[(1R)-1-{[(BENZYLOXY)CARBONYL]AMINO}-2-PHENYLETHYL](HYDROXY)PHOSPHORYL]CYCLOPENTYL}CARBONYL)-L-TRYPT OPHAN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RXPA380 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C24 RX3 sing 277 n n OXT HOXT RX3 sing 278 n n C24 O6 RX3 doub 279 n n C24 C23 RX3 sing 280 n n C23 C25 RX3 sing 281 n n C23 N2 RX3 sing 282 n n C23 H23 RX3 sing 283 n n C25 C26 RX3 sing 284 n n C25 H251 RX3 sing 285 n n C25 H252 RX3 sing 286 n n C26 C27 RX3 doub 287 n y C26 C28 RX3 sing 288 n y C28 C29 RX3 sing 289 n y C28 C30 RX3 doub 290 n y C30 C32 RX3 sing 291 n y C30 H30 RX3 sing 292 n n C32 C33 RX3 doub 293 n y C32 H32 RX3 sing 294 n n C33 C31 RX3 sing 295 n y C33 H33 RX3 sing 296 n n C31 C29 RX3 doub 297 n y C31 H31 RX3 sing 298 n n C29 N3 RX3 sing 299 n y N3 C27 RX3 sing 300 n y N3 HN3 RX3 sing 301 n n C27 H27 RX3 sing 302 n n N2 C19 RX3 sing 303 n n N2 HN2 RX3 sing 304 n n C19 O5 RX3 doub 305 n n C19 C18 RX3 sing 306 n n C18 C20 RX3 sing 307 n n C18 C17 RX3 sing 308 n n C18 H18 RX3 sing 309 n n C20 C21 RX3 sing 310 n n C20 H201 RX3 sing 311 n n C20 H202 RX3 sing 312 n n C21 C22 RX3 sing 313 n n C21 H211 RX3 sing 314 n n C21 H212 RX3 sing 315 n n C22 C17 RX3 sing 316 n n C22 H221 RX3 sing 317 n n C22 H222 RX3 sing 318 n n C17 P1 RX3 sing 319 n n C17 H17 RX3 sing 320 n n P1 O3 RX3 doub 321 n n P1 O4 RX3 sing 322 n n P1 C9 RX3 sing 323 n n O4 HO4 RX3 sing 324 n n C9 C10 RX3 sing 325 n n C9 N1 RX3 sing 326 n n C9 H9 RX3 sing 327 n n C10 C11 RX3 sing 328 n n C10 H101 RX3 sing 329 n n C10 H102 RX3 sing 330 n n C11 C12 RX3 doub 331 n y C11 C13 RX3 sing 332 n y C13 C15 RX3 doub 333 n y C13 H13 RX3 sing 334 n n C15 C16 RX3 sing 335 n y C15 H15 RX3 sing 336 n n C16 C14 RX3 doub 337 n y C16 H16 RX3 sing 338 n n C14 C12 RX3 sing 339 n y C14 H14 RX3 sing 340 n n C12 H12 RX3 sing 341 n n N1 C1 RX3 sing 342 n n N1 HN1 RX3 sing 343 n n C1 O2 RX3 doub 344 n n C1 O1 RX3 sing 345 n n O1 C2 RX3 sing 346 n n C2 C3 RX3 sing 347 n n C2 H21 RX3 sing 348 n n C2 H22 RX3 sing 349 n n C3 C4 RX3 sing 350 n y C3 C5 RX3 doub 351 n y C4 C6 RX3 doub 352 n y C4 H4 RX3 sing 353 n n C5 C7 RX3 sing 354 n y C5 H5 RX3 sing 355 n n C7 C8 RX3 doub 356 n y C7 H7 RX3 sing 357 n n C8 C6 RX3 sing 358 n y C8 H8 RX3 sing 359 n n C6 H6 RX3 sing 360 n n # _atom_sites.entry_id 2OC2 _atom_sites.fract_transf_matrix[1][1] 0.017695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 701 ZN ZN . C 3 CL A 1 703 703 CL CL . D 3 CL A 1 704 704 CL CL . E 4 RX3 A 1 680 680 RX3 RX3 . F 5 HOH A 1 705 1 HOH HOH . F 5 HOH A 2 706 2 HOH HOH . F 5 HOH A 3 707 3 HOH HOH . F 5 HOH A 4 708 4 HOH HOH . F 5 HOH A 5 709 5 HOH HOH . F 5 HOH A 6 710 6 HOH HOH . F 5 HOH A 7 711 7 HOH HOH . F 5 HOH A 8 712 8 HOH HOH . F 5 HOH A 9 713 9 HOH HOH . F 5 HOH A 10 714 10 HOH HOH . F 5 HOH A 11 715 11 HOH HOH . F 5 HOH A 12 716 12 HOH HOH . F 5 HOH A 13 717 13 HOH HOH . F 5 HOH A 14 718 14 HOH HOH . F 5 HOH A 15 719 15 HOH HOH . F 5 HOH A 16 720 16 HOH HOH . F 5 HOH A 17 721 17 HOH HOH . F 5 HOH A 18 722 18 HOH HOH . F 5 HOH A 19 723 19 HOH HOH . F 5 HOH A 20 724 20 HOH HOH . F 5 HOH A 21 725 21 HOH HOH . F 5 HOH A 22 726 22 HOH HOH . F 5 HOH A 23 727 23 HOH HOH . F 5 HOH A 24 728 24 HOH HOH . F 5 HOH A 25 729 25 HOH HOH . F 5 HOH A 26 730 26 HOH HOH . F 5 HOH A 27 731 27 HOH HOH . F 5 HOH A 28 732 28 HOH HOH . F 5 HOH A 29 733 29 HOH HOH . F 5 HOH A 30 734 30 HOH HOH . F 5 HOH A 31 735 31 HOH HOH . F 5 HOH A 32 736 32 HOH HOH . F 5 HOH A 33 737 33 HOH HOH . F 5 HOH A 34 738 34 HOH HOH . F 5 HOH A 35 739 35 HOH HOH . F 5 HOH A 36 740 36 HOH HOH . F 5 HOH A 37 741 37 HOH HOH . F 5 HOH A 38 742 38 HOH HOH . F 5 HOH A 39 743 39 HOH HOH . F 5 HOH A 40 744 40 HOH HOH . F 5 HOH A 41 745 41 HOH HOH . F 5 HOH A 42 746 42 HOH HOH . F 5 HOH A 43 747 43 HOH HOH . F 5 HOH A 44 748 44 HOH HOH . F 5 HOH A 45 749 45 HOH HOH . F 5 HOH A 46 750 46 HOH HOH . F 5 HOH A 47 751 47 HOH HOH . F 5 HOH A 48 752 48 HOH HOH . F 5 HOH A 49 753 49 HOH HOH . F 5 HOH A 50 754 50 HOH HOH . F 5 HOH A 51 755 51 HOH HOH . F 5 HOH A 52 756 52 HOH HOH . F 5 HOH A 53 757 53 HOH HOH . F 5 HOH A 54 758 54 HOH HOH . F 5 HOH A 55 759 55 HOH HOH . F 5 HOH A 56 760 56 HOH HOH . F 5 HOH A 57 761 57 HOH HOH . F 5 HOH A 58 762 58 HOH HOH . F 5 HOH A 59 763 59 HOH HOH . F 5 HOH A 60 764 60 HOH HOH . F 5 HOH A 61 765 61 HOH HOH . F 5 HOH A 62 766 62 HOH HOH . F 5 HOH A 63 767 63 HOH HOH . F 5 HOH A 64 768 64 HOH HOH . F 5 HOH A 65 769 65 HOH HOH . F 5 HOH A 66 770 66 HOH HOH . F 5 HOH A 67 771 67 HOH HOH . F 5 HOH A 68 772 68 HOH HOH . F 5 HOH A 69 773 69 HOH HOH . F 5 HOH A 70 774 70 HOH HOH . F 5 HOH A 71 775 71 HOH HOH . F 5 HOH A 72 776 72 HOH HOH . F 5 HOH A 73 777 73 HOH HOH . F 5 HOH A 74 778 74 HOH HOH . F 5 HOH A 75 779 75 HOH HOH . F 5 HOH A 76 780 76 HOH HOH . F 5 HOH A 77 781 77 HOH HOH . F 5 HOH A 78 782 78 HOH HOH . F 5 HOH A 79 783 79 HOH HOH . F 5 HOH A 80 784 80 HOH HOH . F 5 HOH A 81 785 81 HOH HOH . F 5 HOH A 82 786 82 HOH HOH . F 5 HOH A 83 787 83 HOH HOH . F 5 HOH A 84 788 84 HOH HOH . F 5 HOH A 85 789 85 HOH HOH . F 5 HOH A 86 790 86 HOH HOH . F 5 HOH A 87 791 87 HOH HOH . F 5 HOH A 88 792 88 HOH HOH . F 5 HOH A 89 793 89 HOH HOH . F 5 HOH A 90 794 90 HOH HOH . F 5 HOH A 91 795 91 HOH HOH . F 5 HOH A 92 796 92 HOH HOH . F 5 HOH A 93 797 93 HOH HOH . F 5 HOH A 94 798 94 HOH HOH . F 5 HOH A 95 799 95 HOH HOH . F 5 HOH A 96 800 96 HOH HOH . F 5 HOH A 97 801 98 HOH HOH . F 5 HOH A 98 802 99 HOH HOH . F 5 HOH A 99 803 100 HOH HOH . F 5 HOH A 100 804 101 HOH HOH . F 5 HOH A 101 805 102 HOH HOH . F 5 HOH A 102 806 103 HOH HOH . F 5 HOH A 103 807 104 HOH HOH . F 5 HOH A 104 808 105 HOH HOH . F 5 HOH A 105 809 106 HOH HOH . F 5 HOH A 106 810 107 HOH HOH . F 5 HOH A 107 811 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RX3 . . . E 4 42.182 37.673 50.817 1 17.55 ? C1 RX3 680 A 1 HETATM 2 O O2 RX3 . . . E 4 43.056 36.897 51.157 1 18.64 ? O2 RX3 680 A 1 HETATM 3 O O1 RX3 . . . E 4 42.113 38.941 51.509 1 16.93 ? O1 RX3 680 A 1 HETATM 4 C C2 RX3 . . . E 4 43.288 39.68 51.835 1 15.82 ? C2 RX3 680 A 1 HETATM 5 C C3 RX3 . . . E 4 42.922 41.112 52.177 1 15.38 ? C3 RX3 680 A 1 HETATM 6 C C4 RX3 . . . E 4 42.859 42.081 51.176 1 13.99 ? C4 RX3 680 A 1 HETATM 7 C C6 RX3 . . . E 4 42.527 43.398 51.504 1 14.99 ? C6 RX3 680 A 1 HETATM 8 C C8 RX3 . . . E 4 42.251 43.754 52.83 1 14.46 ? C8 RX3 680 A 1 HETATM 9 C C7 RX3 . . . E 4 42.313 42.788 53.83 1 14.6 ? C7 RX3 680 A 1 HETATM 10 C C5 RX3 . . . E 4 42.646 41.47 53.503 1 15.48 ? C5 RX3 680 A 1 HETATM 11 O O3 RX3 . . . E 4 42.002 37.28 46.842 1 16.36 ? O3 RX3 680 A 1 HETATM 12 P P1 RX3 . . . E 4 42.353 36.188 47.836 1 17.3 ? P1 RX3 680 A 1 HETATM 13 O O4 RX3 . . . E 4 43.722 36.349 48.429 1 17.21 ? O4 RX3 680 A 1 HETATM 14 C C9 RX3 . . . E 4 41.144 36.38 49.067 1 16.49 ? C9 RX3 680 A 1 HETATM 15 N N1 RX3 . . . E 4 41.276 37.444 49.865 1 16.97 ? N1 RX3 680 A 1 HETATM 16 C C10 RX3 . . . E 4 39.885 35.528 49.181 1 15.95 ? C10 RX3 680 A 1 HETATM 17 C C11 RX3 . . . E 4 38.957 35.869 50.343 1 16.81 ? C11 RX3 680 A 1 HETATM 18 C C12 RX3 . . . E 4 38.361 37.132 50.472 1 16.61 ? C12 RX3 680 A 1 HETATM 19 C C14 RX3 . . . E 4 37.52 37.427 51.551 1 16.77 ? C14 RX3 680 A 1 HETATM 20 C C16 RX3 . . . E 4 37.248 36.449 52.512 1 16.81 ? C16 RX3 680 A 1 HETATM 21 C C15 RX3 . . . E 4 37.831 35.182 52.391 1 16.42 ? C15 RX3 680 A 1 HETATM 22 C C13 RX3 . . . E 4 38.677 34.897 51.311 1 16.36 ? C13 RX3 680 A 1 HETATM 23 C C19 RX3 . . . E 4 41.24 34.676 44.729 1 16.82 ? C19 RX3 680 A 1 HETATM 24 O O5 RX3 . . . E 4 40.157 34.602 45.317 1 16.19 ? O5 RX3 680 A 1 HETATM 25 C C18 RX3 . . . E 4 42.557 34.671 45.465 1 15.61 ? C18 RX3 680 A 1 HETATM 26 C C20 RX3 . . . E 4 43.323 33.378 45.202 1 14.25 ? C20 RX3 680 A 1 HETATM 27 C C21 RX3 . . . E 4 43.246 32.527 46.471 1 15.13 ? C21 RX3 680 A 1 HETATM 28 C C22 RX3 . . . E 4 42.601 33.353 47.587 1 16.09 ? C22 RX3 680 A 1 HETATM 29 C C17 RX3 . . . E 4 42.455 34.711 46.962 1 16.01 ? C17 RX3 680 A 1 HETATM 30 N N2 RX3 . . . E 4 41.374 34.765 43.405 1 16.12 ? N2 RX3 680 A 1 HETATM 31 C C23 RX3 . . . E 4 40.256 34.763 42.47 1 18.76 ? C23 RX3 680 A 1 HETATM 32 C C24 RX3 . . . E 4 39.555 33.421 42.39 1 18.67 ? C24 RX3 680 A 1 HETATM 33 O O6 RX3 . . . E 4 38.463 33.336 41.784 1 18.36 ? O6 RX3 680 A 1 HETATM 34 C C25 RX3 . . . E 4 40.831 35.196 41.111 1 19.87 ? C25 RX3 680 A 1 HETATM 35 C C26 RX3 . . . E 4 41.969 34.346 40.583 1 21.03 ? C26 RX3 680 A 1 HETATM 36 C C27 RX3 . . . E 4 41.857 33.256 39.727 1 21.38 ? C27 RX3 680 A 1 HETATM 37 C C28 RX3 . . . E 4 43.33 34.51 40.824 1 22.01 ? C28 RX3 680 A 1 HETATM 38 N N3 RX3 . . . E 4 43.097 32.765 39.465 1 22.3 ? N3 RX3 680 A 1 HETATM 39 C C29 RX3 . . . E 4 44.018 33.514 40.124 1 23.42 ? C29 RX3 680 A 1 HETATM 40 C C30 RX3 . . . E 4 44.011 35.451 41.605 1 21.17 ? C30 RX3 680 A 1 HETATM 41 C C31 RX3 . . . E 4 45.422 33.454 40.213 1 22.87 ? C31 RX3 680 A 1 HETATM 42 C C32 RX3 . . . E 4 45.405 35.383 41.683 1 21.18 ? C32 RX3 680 A 1 HETATM 43 C C33 RX3 . . . E 4 46.108 34.393 40.993 1 21.64 ? C33 RX3 680 A 1 HETATM 44 O OXT RX3 . . . E 4 40.074 32.424 42.935 1 19.17 ? OXT RX3 680 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #