data_2OC4 # _model_server_result.job_id 65LCXpPMpAdseZvsiDeWyg _model_server_result.datetime_utc '2024-11-07 16:43:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2OC4 # _exptl.entry_id 2OC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OC4 _cell.length_a 142.974 _cell.length_b 142.974 _cell.length_c 168.55 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id IMH _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Forodesine;Immucillin H' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' IMH sing 173 n n O5' "HO'5" IMH sing 174 n n C5' C4' IMH sing 175 n n C5' "H5'1" IMH sing 176 n n C5' "H5'2" IMH sing 177 n n C4' N4' IMH sing 178 n n C4' C3' IMH sing 179 n n C4' H4' IMH sing 180 n n N4' C1' IMH sing 181 n n N4' "HN'4" IMH sing 182 n n C3' O3' IMH sing 183 n n C3' C2' IMH sing 184 n n C3' H3' IMH sing 185 n n O3' "HO'3" IMH sing 186 n n C2' O2' IMH sing 187 n n C2' C1' IMH sing 188 n n C2' H2' IMH sing 189 n n O2' "HO'2" IMH sing 190 n n C1' C9 IMH sing 191 n n C1' H1' IMH sing 192 n n C9 C8 IMH doub 193 n y C9 C4 IMH sing 194 n y C8 N7 IMH sing 195 n y C8 H8 IMH sing 196 n n N7 C5 IMH sing 197 n y N7 HN7 IMH sing 198 n n C5 C6 IMH sing 199 n n C5 C4 IMH doub 200 n y C6 O6 IMH doub 201 n n C6 N1 IMH sing 202 n n N1 C2 IMH sing 203 n n C2 N3 IMH doub 204 n n C2 H2 IMH sing 205 n n N3 C4 IMH sing 206 n n N1 H1 IMH sing 207 n n # _atom_sites.entry_id 2OC4 _atom_sites.fract_transf_matrix[1][1] 0.006994 _atom_sites.fract_transf_matrix[1][2] 0.004038 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 401 PO4 PO4 . C 3 IMH A 1 300 300 IMH IMH . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 503 503 HOH HOH . D 4 HOH A 3 504 504 HOH HOH . D 4 HOH A 4 507 507 HOH HOH . D 4 HOH A 5 508 508 HOH HOH . D 4 HOH A 6 509 509 HOH HOH . D 4 HOH A 7 510 510 HOH HOH . D 4 HOH A 8 515 515 HOH HOH . D 4 HOH A 9 516 516 HOH HOH . D 4 HOH A 10 518 518 HOH HOH . D 4 HOH A 11 520 520 HOH HOH . D 4 HOH A 12 521 521 HOH HOH . D 4 HOH A 13 522 522 HOH HOH . D 4 HOH A 14 523 523 HOH HOH . D 4 HOH A 15 524 524 HOH HOH . D 4 HOH A 16 525 525 HOH HOH . D 4 HOH A 17 530 530 HOH HOH . D 4 HOH A 18 531 531 HOH HOH . D 4 HOH A 19 532 532 HOH HOH . D 4 HOH A 20 533 533 HOH HOH . D 4 HOH A 21 534 534 HOH HOH . D 4 HOH A 22 535 535 HOH HOH . D 4 HOH A 23 538 538 HOH HOH . D 4 HOH A 24 540 540 HOH HOH . D 4 HOH A 25 542 542 HOH HOH . D 4 HOH A 26 543 543 HOH HOH . D 4 HOH A 27 544 544 HOH HOH . D 4 HOH A 28 545 545 HOH HOH . D 4 HOH A 29 546 546 HOH HOH . D 4 HOH A 30 547 547 HOH HOH . D 4 HOH A 31 548 548 HOH HOH . D 4 HOH A 32 549 549 HOH HOH . D 4 HOH A 33 550 550 HOH HOH . D 4 HOH A 34 551 551 HOH HOH . D 4 HOH A 35 552 552 HOH HOH . D 4 HOH A 36 553 553 HOH HOH . D 4 HOH A 37 555 555 HOH HOH . D 4 HOH A 38 556 556 HOH HOH . D 4 HOH A 39 557 557 HOH HOH . D 4 HOH A 40 561 561 HOH HOH . D 4 HOH A 41 562 562 HOH HOH . D 4 HOH A 42 563 563 HOH HOH . D 4 HOH A 43 564 564 HOH HOH . D 4 HOH A 44 565 565 HOH HOH . D 4 HOH A 45 567 567 HOH HOH . D 4 HOH A 46 568 568 HOH HOH . D 4 HOH A 47 569 569 HOH HOH . D 4 HOH A 48 570 570 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' IMH . . . C 3 17.307 11.467 60.049 1 60.41 ? O5' IMH 300 A 1 HETATM 2 C C5' IMH . . . C 3 16.591 11.655 61.276 1 60.08 ? C5' IMH 300 A 1 HETATM 3 C C4' IMH . . . C 3 15.51 12.712 61.151 1 61.59 ? C4' IMH 300 A 1 HETATM 4 N N4' IMH . . . C 3 15.233 13.253 59.807 1 62.04 ? N4' IMH 300 A 1 HETATM 5 C C3' IMH . . . C 3 14.204 12.073 61.593 1 62.05 ? C3' IMH 300 A 1 HETATM 6 O O3' IMH . . . C 3 13.744 12.791 62.777 1 63.63 ? O3' IMH 300 A 1 HETATM 7 C C2' IMH . . . C 3 13.268 12.068 60.356 1 61.64 ? C2' IMH 300 A 1 HETATM 8 O O2' IMH . . . C 3 11.958 12.547 60.663 1 61.17 ? O2' IMH 300 A 1 HETATM 9 C C1' IMH . . . C 3 13.9 12.926 59.227 1 60.6 ? C1' IMH 300 A 1 HETATM 10 C C9 IMH . . . C 3 14.198 12.204 57.956 1 59.63 ? C9 IMH 300 A 1 HETATM 11 C C8 IMH . . . C 3 15.163 12.687 57.088 1 59 ? C8 IMH 300 A 1 HETATM 12 N N7 IMH . . . C 3 15.261 11.785 56.051 1 59.4 ? N7 IMH 300 A 1 HETATM 13 C C5 IMH . . . C 3 14.448 10.721 56.22 1 59.17 ? C5 IMH 300 A 1 HETATM 14 C C6 IMH . . . C 3 14.155 9.479 55.506 1 59.15 ? C6 IMH 300 A 1 HETATM 15 O O6 IMH . . . C 3 14.805 9.251 54.356 1 59.53 ? O6 IMH 300 A 1 HETATM 16 N N1 IMH . . . C 3 13.236 8.61 55.998 1 59.28 ? N1 IMH 300 A 1 HETATM 17 C C2 IMH . . . C 3 12.579 8.86 57.134 1 59.18 ? C2 IMH 300 A 1 HETATM 18 N N3 IMH . . . C 3 12.804 9.971 57.863 1 59.66 ? N3 IMH 300 A 1 HETATM 19 C C4 IMH . . . C 3 13.707 10.895 57.46 1 59.3 ? C4 IMH 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #