data_2OC8 # _model_server_result.job_id bLSBmmWhfy0qMI-FMKc_nA _model_server_result.datetime_utc '2024-11-24 01:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 2OC8 # _exptl.entry_id 2OC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 'ketoamide covalently linked to Ser139 of Chain A' _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OC8 _cell.length_a 223.871 _cell.length_b 223.871 _cell.length_c 74.962 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 16 1_555 F S2 BME . A BME 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale2 A OG SER 150 A SER 139 1_555 G C03 U5G . A U5G 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A SG CYS 108 A CYS 97 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A SG CYS 110 A CYS 99 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A SG CYS 156 A CYS 145 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc4 C SG CYS 108 C CYS 97 1_555 H ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 C SG CYS 110 C CYS 99 1_555 H ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 C SG CYS 156 C CYS 145 1_555 H ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 H ZN ZN . C ZN 902 1_555 K O HOH . C HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 2OC8 _atom_sites.fract_transf_matrix[1][1] 0.004467 _atom_sites.fract_transf_matrix[1][2] 0.002579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 901 901 ZN ZN . F 4 BME A 1 801 801 BME BME . G 5 U5G A 1 999 999 U5G INH . H 3 ZN C 1 902 902 ZN ZN . I 6 HOH A 1 1000 3 HOH HOH . I 6 HOH A 2 1001 5 HOH HOH . I 6 HOH A 3 1002 6 HOH HOH . I 6 HOH A 4 1003 8 HOH HOH . I 6 HOH A 5 1004 9 HOH HOH . I 6 HOH A 6 1005 10 HOH HOH . I 6 HOH A 7 1006 11 HOH HOH . I 6 HOH A 8 1007 13 HOH HOH . I 6 HOH A 9 1008 14 HOH HOH . I 6 HOH A 10 1009 15 HOH HOH . I 6 HOH A 11 1010 17 HOH HOH . I 6 HOH A 12 1011 19 HOH HOH . I 6 HOH A 13 1012 20 HOH HOH . I 6 HOH A 14 1013 21 HOH HOH . I 6 HOH A 15 1014 22 HOH HOH . I 6 HOH A 16 1015 23 HOH HOH . I 6 HOH A 17 1016 24 HOH HOH . I 6 HOH A 18 1017 25 HOH HOH . I 6 HOH A 19 1018 26 HOH HOH . I 6 HOH A 20 1019 28 HOH HOH . I 6 HOH A 21 1020 30 HOH HOH . I 6 HOH A 22 1021 32 HOH HOH . I 6 HOH A 23 1022 33 HOH HOH . I 6 HOH A 24 1023 34 HOH HOH . I 6 HOH A 25 1024 35 HOH HOH . I 6 HOH A 26 1025 36 HOH HOH . I 6 HOH A 27 1026 37 HOH HOH . I 6 HOH A 28 1027 38 HOH HOH . I 6 HOH A 29 1028 39 HOH HOH . I 6 HOH A 30 1029 40 HOH HOH . I 6 HOH A 31 1030 41 HOH HOH . I 6 HOH A 32 1031 42 HOH HOH . I 6 HOH A 33 1032 43 HOH HOH . I 6 HOH A 34 1033 44 HOH HOH . I 6 HOH A 35 1034 46 HOH HOH . I 6 HOH A 36 1035 47 HOH HOH . I 6 HOH A 37 1036 49 HOH HOH . I 6 HOH A 38 1037 50 HOH HOH . I 6 HOH A 39 1038 51 HOH HOH . I 6 HOH A 40 1039 52 HOH HOH . I 6 HOH A 41 1040 53 HOH HOH . I 6 HOH A 42 1041 56 HOH HOH . I 6 HOH A 43 1042 57 HOH HOH . I 6 HOH A 44 1043 58 HOH HOH . I 6 HOH A 45 1044 59 HOH HOH . I 6 HOH A 46 1045 60 HOH HOH . I 6 HOH A 47 1046 63 HOH HOH . I 6 HOH A 48 1047 65 HOH HOH . I 6 HOH A 49 1048 71 HOH HOH . I 6 HOH A 50 1049 74 HOH HOH . I 6 HOH A 51 1050 76 HOH HOH . I 6 HOH A 52 1051 77 HOH HOH . I 6 HOH A 53 1052 93 HOH HOH . I 6 HOH A 54 1053 95 HOH HOH . I 6 HOH A 55 1054 96 HOH HOH . I 6 HOH A 56 1055 97 HOH HOH . I 6 HOH A 57 1056 98 HOH HOH . I 6 HOH A 58 1057 99 HOH HOH . I 6 HOH A 59 1058 100 HOH HOH . I 6 HOH A 60 1059 102 HOH HOH . I 6 HOH A 61 1060 103 HOH HOH . I 6 HOH A 62 1061 105 HOH HOH . I 6 HOH A 63 1062 106 HOH HOH . I 6 HOH A 64 1063 107 HOH HOH . I 6 HOH A 65 1064 108 HOH HOH . I 6 HOH A 66 1065 109 HOH HOH . I 6 HOH A 67 1066 112 HOH HOH . I 6 HOH A 68 1067 115 HOH HOH . I 6 HOH A 69 1068 119 HOH HOH . I 6 HOH A 70 1069 120 HOH HOH . I 6 HOH A 71 1070 122 HOH HOH . I 6 HOH A 72 1071 123 HOH HOH . I 6 HOH A 73 1072 124 HOH HOH . I 6 HOH A 74 1073 125 HOH HOH . I 6 HOH A 75 1074 127 HOH HOH . I 6 HOH A 76 1075 128 HOH HOH . I 6 HOH A 77 1076 129 HOH HOH . I 6 HOH A 78 1077 130 HOH HOH . I 6 HOH A 79 1078 131 HOH HOH . I 6 HOH A 80 1079 132 HOH HOH . I 6 HOH A 81 1080 133 HOH HOH . I 6 HOH A 82 1081 136 HOH HOH . J 6 HOH B 1 42 4 HOH HOH . J 6 HOH B 2 43 12 HOH HOH . J 6 HOH B 3 44 16 HOH HOH . J 6 HOH B 4 45 18 HOH HOH . J 6 HOH B 5 46 29 HOH HOH . J 6 HOH B 6 47 48 HOH HOH . J 6 HOH B 7 48 54 HOH HOH . J 6 HOH B 8 49 94 HOH HOH . J 6 HOH B 9 50 121 HOH HOH . K 6 HOH C 1 903 1 HOH HOH . K 6 HOH C 2 904 7 HOH HOH . K 6 HOH C 3 905 27 HOH HOH . K 6 HOH C 4 906 31 HOH HOH . K 6 HOH C 5 907 45 HOH HOH . K 6 HOH C 6 908 55 HOH HOH . K 6 HOH C 7 909 61 HOH HOH . K 6 HOH C 8 910 62 HOH HOH . K 6 HOH C 9 911 64 HOH HOH . K 6 HOH C 10 912 66 HOH HOH . K 6 HOH C 11 913 68 HOH HOH . K 6 HOH C 12 914 69 HOH HOH . K 6 HOH C 13 915 70 HOH HOH . K 6 HOH C 14 916 72 HOH HOH . K 6 HOH C 15 917 75 HOH HOH . K 6 HOH C 16 918 78 HOH HOH . K 6 HOH C 17 919 79 HOH HOH . K 6 HOH C 18 920 80 HOH HOH . K 6 HOH C 19 921 81 HOH HOH . K 6 HOH C 20 922 82 HOH HOH . K 6 HOH C 21 923 83 HOH HOH . K 6 HOH C 22 924 84 HOH HOH . K 6 HOH C 23 925 85 HOH HOH . K 6 HOH C 24 926 86 HOH HOH . K 6 HOH C 25 927 87 HOH HOH . K 6 HOH C 26 928 88 HOH HOH . K 6 HOH C 27 929 89 HOH HOH . K 6 HOH C 28 930 91 HOH HOH . K 6 HOH C 29 931 92 HOH HOH . K 6 HOH C 30 932 101 HOH HOH . K 6 HOH C 31 933 104 HOH HOH . K 6 HOH C 32 934 110 HOH HOH . K 6 HOH C 33 935 111 HOH HOH . K 6 HOH C 34 936 113 HOH HOH . K 6 HOH C 35 937 114 HOH HOH . K 6 HOH C 36 938 116 HOH HOH . K 6 HOH C 37 939 117 HOH HOH . K 6 HOH C 38 940 118 HOH HOH . K 6 HOH C 39 941 134 HOH HOH . K 6 HOH C 40 942 135 HOH HOH . K 6 HOH C 41 943 137 HOH HOH . K 6 HOH C 42 944 138 HOH HOH . L 6 HOH D 1 2 2 HOH HOH . L 6 HOH D 2 67 67 HOH HOH . L 6 HOH D 3 73 73 HOH HOH . L 6 HOH D 4 90 90 HOH HOH . L 6 HOH D 5 126 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 4 213.333 -1.815 52.28 1 61.82 ? C1 BME 801 A 1 HETATM 2 C C2 BME . . . F 4 212.535 -1.074 53.342 1 55.6 ? C2 BME 801 A 1 HETATM 3 O O1 BME . . . F 4 214.574 -1.183 51.986 1 68.99 ? O1 BME 801 A 1 HETATM 4 S S2 BME . . . F 4 213.285 -0.926 54.999 1 49.78 ? S2 BME 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #