data_2OCB
#
_model_server_result.job_id            FANO8DSorzOT16VgJ4AXUw 
_model_server_result.datetime_utc      '2024-10-19 16:36:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ocb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    2OCB 
#
_exptl.entry_id    2OCB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2OCB 
_cell.length_a            70.43 
_cell.length_b            70.43 
_cell.length_c            97.715 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OCB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 21 A SER 21 1_555 B MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc2 A OG1 THR 39 A THR 39 1_555 B MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc3 C O2G GNP . A GNP 201 1_555 B MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc4 C O2B GNP . A GNP 201 1_555 B MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc5 B MG MG . A MG 202 1_555 K O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc6 B MG MG . A MG 202 1_555 K O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     2OCB 
_atom_sites.fract_transf_matrix[1][1]    0.0142 
_atom_sites.fract_transf_matrix[1][2]    0.0082 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01023 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 202 202 MG MG . 
C 3 GNP A 1 201 201 GNP GNP . 
D 4 UNX A 1 1001 1001 UNX UNX . 
E 4 UNX A 1 1002 1002 UNX UNX . 
F 4 UNX A 1 1003 1003 UNX UNX . 
G 4 UNX A 1 1004 1004 UNX UNX . 
H 4 UNX A 1 1005 1005 UNX UNX . 
I 4 UNX A 1 1006 1006 UNX UNX . 
J 4 UNX A 1 1007 1007 UNX UNX . 
K 5 HOH A 1 301 301 HOH HOH . 
K 5 HOH A 2 302 302 HOH HOH . 
K 5 HOH A 3 303 303 HOH HOH . 
K 5 HOH A 4 304 304 HOH HOH . 
K 5 HOH A 5 305 305 HOH HOH . 
K 5 HOH A 6 306 306 HOH HOH . 
K 5 HOH A 7 307 307 HOH HOH . 
K 5 HOH A 8 308 308 HOH HOH . 
K 5 HOH A 9 309 309 HOH HOH . 
K 5 HOH A 10 310 310 HOH HOH . 
K 5 HOH A 11 311 311 HOH HOH . 
K 5 HOH A 12 312 312 HOH HOH . 
K 5 HOH A 13 313 313 HOH HOH . 
K 5 HOH A 14 314 314 HOH HOH . 
K 5 HOH A 15 315 315 HOH HOH . 
K 5 HOH A 16 316 316 HOH HOH . 
K 5 HOH A 17 317 317 HOH HOH . 
K 5 HOH A 18 318 318 HOH HOH . 
K 5 HOH A 19 319 319 HOH HOH . 
K 5 HOH A 20 320 320 HOH HOH . 
K 5 HOH A 21 321 321 HOH HOH . 
K 5 HOH A 22 322 322 HOH HOH . 
K 5 HOH A 23 323 323 HOH HOH . 
K 5 HOH A 24 324 324 HOH HOH . 
K 5 HOH A 25 325 325 HOH HOH . 
K 5 HOH A 26 326 326 HOH HOH . 
K 5 HOH A 27 327 327 HOH HOH . 
K 5 HOH A 28 328 328 HOH HOH . 
K 5 HOH A 29 329 329 HOH HOH . 
K 5 HOH A 30 330 330 HOH HOH . 
K 5 HOH A 31 331 331 HOH HOH . 
K 5 HOH A 32 332 332 HOH HOH . 
K 5 HOH A 33 333 333 HOH HOH . 
K 5 HOH A 34 334 334 HOH HOH . 
K 5 HOH A 35 335 335 HOH HOH . 
K 5 HOH A 36 336 336 HOH HOH . 
K 5 HOH A 37 337 337 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 -37.157 15.119 24.101 1 31.82 ? PG GNP 201 A 1 
HETATM 2 O O1G GNP . . . C 3 -38.129 14.365 24.969 1 32.33 ? O1G GNP 201 A 1 
HETATM 3 O O2G GNP . . . C 3 -36.051 15.707 24.848 1 30.23 ? O2G GNP 201 A 1 
HETATM 4 O O3G GNP . . . C 3 -38.084 16.092 23.376 1 35.86 ? O3G GNP 201 A 1 
HETATM 5 N N3B GNP . . . C 3 -36.495 14.047 23.075 1 34.23 ? N3B GNP 201 A 1 
HETATM 6 P PB GNP . . . C 3 -35.553 14.283 21.793 1 32.7 ? PB GNP 201 A 1 
HETATM 7 O O1B GNP . . . C 3 -36.477 14.682 20.701 1 26.76 ? O1B GNP 201 A 1 
HETATM 8 O O2B GNP . . . C 3 -34.479 15.241 22.097 1 20.27 ? O2B GNP 201 A 1 
HETATM 9 O O3A GNP . . . C 3 -34.87 12.93 21.402 1 27.83 ? O3A GNP 201 A 1 
HETATM 10 P PA GNP . . . C 3 -33.469 12.369 21.752 1 34.93 ? PA GNP 201 A 1 
HETATM 11 O O1A GNP . . . C 3 -32.335 13.055 21.112 1 32.33 ? O1A GNP 201 A 1 
HETATM 12 O O2A GNP . . . C 3 -33.307 12.264 23.232 1 41.25 ? O2A GNP 201 A 1 
HETATM 13 O O5' GNP . . . C 3 -33.406 10.937 21.183 1 33.54 ? O5' GNP 201 A 1 
HETATM 14 C C5' GNP . . . C 3 -34.39 9.939 21.523 1 36.26 ? C5' GNP 201 A 1 
HETATM 15 C C4' GNP . . . C 3 -33.853 8.521 21.299 1 37.77 ? C4' GNP 201 A 1 
HETATM 16 O O4' GNP . . . C 3 -33.717 8.282 19.868 1 36.5 ? O4' GNP 201 A 1 
HETATM 17 C C3' GNP . . . C 3 -32.469 8.174 21.897 1 40.85 ? C3' GNP 201 A 1 
HETATM 18 O O3' GNP . . . C 3 -32.385 6.785 22.346 1 43.29 ? O3' GNP 201 A 1 
HETATM 19 C C2' GNP . . . C 3 -31.499 8.411 20.747 1 40.13 ? C2' GNP 201 A 1 
HETATM 20 O O2' GNP . . . C 3 -30.319 7.61 20.839 1 40.54 ? O2' GNP 201 A 1 
HETATM 21 C C1' GNP . . . C 3 -32.369 8.015 19.552 1 40.2 ? C1' GNP 201 A 1 
HETATM 22 N N9 GNP . . . C 3 -32.06 8.738 18.304 1 42.47 ? N9 GNP 201 A 1 
HETATM 23 C C8 GNP . . . C 3 -31.89 10.1 18.075 1 41.86 ? C8 GNP 201 A 1 
HETATM 24 N N7 GNP . . . C 3 -31.634 10.38 16.82 1 42.84 ? N7 GNP 201 A 1 
HETATM 25 C C5 GNP . . . C 3 -31.631 9.131 16.184 1 43.16 ? C5 GNP 201 A 1 
HETATM 26 C C6 GNP . . . C 3 -31.415 8.75 14.824 1 41.36 ? C6 GNP 201 A 1 
HETATM 27 O O6 GNP . . . C 3 -31.151 9.464 13.863 1 38.79 ? O6 GNP 201 A 1 
HETATM 28 N N1 GNP . . . C 3 -31.521 7.368 14.627 1 42.43 ? N1 GNP 201 A 1 
HETATM 29 C C2 GNP . . . C 3 -31.796 6.431 15.617 1 43.42 ? C2 GNP 201 A 1 
HETATM 30 N N2 GNP . . . C 3 -31.874 5.131 15.252 1 41.18 ? N2 GNP 201 A 1 
HETATM 31 N N3 GNP . . . C 3 -32.008 6.77 16.883 1 44.2 ? N3 GNP 201 A 1 
HETATM 32 C C4 GNP . . . C 3 -31.905 8.121 17.089 1 43.98 ? C4 GNP 201 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           80 
_model_server_stats.create_model_time_ms    75 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#