data_2OCP # _model_server_result.job_id t0cqMwSh2Az6qTLwtlIi7w _model_server_result.datetime_utc '2024-11-13 05:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ocp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 2OCP # _exptl.entry_id 2OCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.68 _cell.angle_gamma 90 _cell.entry_id 2OCP _cell.length_a 68.18 _cell.length_b 120.03 _cell.length_c 154.35 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,R 1 1 C,D,K,L,S,T 2 1 E,F,M,N,U,V 3 1 G,H,O,P,W,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 2OCP _atom_sites.fract_transf_matrix[1][1] 0.014667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000174 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 DTP A 1 301 301 DTP DTP . J 2 DTP B 1 301 301 DTP DTP . K 2 DTP C 1 301 301 DTP DTP . L 2 DTP D 1 301 301 DTP DTP . M 2 DTP E 1 301 301 DTP DTP . N 2 DTP F 1 301 301 DTP DTP . O 2 DTP G 1 301 301 DTP DTP . P 2 DTP H 1 301 301 DTP DTP . Q 3 HOH A 1 302 103 HOH HOH . Q 3 HOH A 2 303 104 HOH HOH . Q 3 HOH A 3 304 105 HOH HOH . Q 3 HOH A 4 305 106 HOH HOH . Q 3 HOH A 5 306 107 HOH HOH . Q 3 HOH A 6 307 108 HOH HOH . Q 3 HOH A 7 308 109 HOH HOH . Q 3 HOH A 8 309 110 HOH HOH . Q 3 HOH A 9 310 111 HOH HOH . Q 3 HOH A 10 311 112 HOH HOH . Q 3 HOH A 11 312 113 HOH HOH . Q 3 HOH A 12 313 114 HOH HOH . Q 3 HOH A 13 314 115 HOH HOH . Q 3 HOH A 14 315 116 HOH HOH . Q 3 HOH A 15 316 117 HOH HOH . Q 3 HOH A 16 317 118 HOH HOH . Q 3 HOH A 17 318 119 HOH HOH . Q 3 HOH A 18 319 120 HOH HOH . Q 3 HOH A 19 320 121 HOH HOH . Q 3 HOH A 20 321 122 HOH HOH . Q 3 HOH A 21 322 123 HOH HOH . Q 3 HOH A 22 323 124 HOH HOH . Q 3 HOH A 23 324 125 HOH HOH . Q 3 HOH A 24 325 201 HOH HOH . Q 3 HOH A 25 326 202 HOH HOH . R 3 HOH B 1 302 101 HOH HOH . R 3 HOH B 2 303 102 HOH HOH . R 3 HOH B 3 304 203 HOH HOH . R 3 HOH B 4 305 204 HOH HOH . R 3 HOH B 5 306 205 HOH HOH . R 3 HOH B 6 307 206 HOH HOH . R 3 HOH B 7 308 207 HOH HOH . R 3 HOH B 8 309 208 HOH HOH . R 3 HOH B 9 310 209 HOH HOH . R 3 HOH B 10 311 210 HOH HOH . R 3 HOH B 11 312 211 HOH HOH . R 3 HOH B 12 313 212 HOH HOH . R 3 HOH B 13 314 213 HOH HOH . R 3 HOH B 14 315 214 HOH HOH . R 3 HOH B 15 316 215 HOH HOH . R 3 HOH B 16 317 216 HOH HOH . R 3 HOH B 17 318 217 HOH HOH . R 3 HOH B 18 319 218 HOH HOH . R 3 HOH B 19 320 219 HOH HOH . R 3 HOH B 20 321 220 HOH HOH . R 3 HOH B 21 322 221 HOH HOH . R 3 HOH B 22 323 222 HOH HOH . R 3 HOH B 23 324 223 HOH HOH . R 3 HOH B 24 325 224 HOH HOH . R 3 HOH B 25 326 225 HOH HOH . S 3 HOH C 1 303 303 HOH HOH . S 3 HOH C 2 304 304 HOH HOH . S 3 HOH C 3 305 305 HOH HOH . S 3 HOH C 4 306 306 HOH HOH . S 3 HOH C 5 307 307 HOH HOH . S 3 HOH C 6 308 308 HOH HOH . S 3 HOH C 7 309 309 HOH HOH . S 3 HOH C 8 310 310 HOH HOH . S 3 HOH C 9 311 311 HOH HOH . S 3 HOH C 10 312 312 HOH HOH . S 3 HOH C 11 313 313 HOH HOH . S 3 HOH C 12 314 314 HOH HOH . S 3 HOH C 13 315 315 HOH HOH . S 3 HOH C 14 316 316 HOH HOH . S 3 HOH C 15 317 317 HOH HOH . S 3 HOH C 16 318 318 HOH HOH . S 3 HOH C 17 319 319 HOH HOH . S 3 HOH C 18 320 320 HOH HOH . S 3 HOH C 19 321 321 HOH HOH . S 3 HOH C 20 322 322 HOH HOH . S 3 HOH C 21 323 323 HOH HOH . S 3 HOH C 22 324 324 HOH HOH . S 3 HOH C 23 325 325 HOH HOH . S 3 HOH C 24 401 401 HOH HOH . S 3 HOH C 25 402 402 HOH HOH . T 3 HOH D 1 302 301 HOH HOH . T 3 HOH D 2 303 302 HOH HOH . T 3 HOH D 3 304 403 HOH HOH . T 3 HOH D 4 305 404 HOH HOH . T 3 HOH D 5 306 405 HOH HOH . T 3 HOH D 6 307 406 HOH HOH . T 3 HOH D 7 308 407 HOH HOH . T 3 HOH D 8 309 408 HOH HOH . T 3 HOH D 9 310 409 HOH HOH . T 3 HOH D 10 311 410 HOH HOH . T 3 HOH D 11 312 411 HOH HOH . T 3 HOH D 12 313 412 HOH HOH . T 3 HOH D 13 314 413 HOH HOH . T 3 HOH D 14 315 414 HOH HOH . T 3 HOH D 15 316 415 HOH HOH . T 3 HOH D 16 317 416 HOH HOH . T 3 HOH D 17 318 417 HOH HOH . T 3 HOH D 18 319 418 HOH HOH . T 3 HOH D 19 320 419 HOH HOH . T 3 HOH D 20 321 420 HOH HOH . T 3 HOH D 21 322 421 HOH HOH . T 3 HOH D 22 323 422 HOH HOH . T 3 HOH D 23 324 423 HOH HOH . T 3 HOH D 24 325 424 HOH HOH . T 3 HOH D 25 326 425 HOH HOH . U 3 HOH E 1 503 503 HOH HOH . U 3 HOH E 2 504 504 HOH HOH . U 3 HOH E 3 505 505 HOH HOH . U 3 HOH E 4 506 506 HOH HOH . U 3 HOH E 5 507 507 HOH HOH . U 3 HOH E 6 508 508 HOH HOH . U 3 HOH E 7 509 509 HOH HOH . U 3 HOH E 8 510 510 HOH HOH . U 3 HOH E 9 511 511 HOH HOH . U 3 HOH E 10 512 512 HOH HOH . U 3 HOH E 11 513 513 HOH HOH . U 3 HOH E 12 514 514 HOH HOH . U 3 HOH E 13 515 515 HOH HOH . U 3 HOH E 14 516 516 HOH HOH . U 3 HOH E 15 517 517 HOH HOH . U 3 HOH E 16 518 518 HOH HOH . U 3 HOH E 17 519 519 HOH HOH . U 3 HOH E 18 520 520 HOH HOH . U 3 HOH E 19 521 521 HOH HOH . U 3 HOH E 20 522 522 HOH HOH . U 3 HOH E 21 523 523 HOH HOH . U 3 HOH E 22 524 524 HOH HOH . U 3 HOH E 23 525 525 HOH HOH . U 3 HOH E 24 601 601 HOH HOH . U 3 HOH E 25 602 602 HOH HOH . V 3 HOH F 1 501 501 HOH HOH . V 3 HOH F 2 502 502 HOH HOH . V 3 HOH F 3 603 603 HOH HOH . V 3 HOH F 4 604 604 HOH HOH . V 3 HOH F 5 605 605 HOH HOH . V 3 HOH F 6 606 606 HOH HOH . V 3 HOH F 7 607 607 HOH HOH . V 3 HOH F 8 608 608 HOH HOH . V 3 HOH F 9 609 609 HOH HOH . V 3 HOH F 10 610 610 HOH HOH . V 3 HOH F 11 611 611 HOH HOH . V 3 HOH F 12 612 612 HOH HOH . V 3 HOH F 13 613 613 HOH HOH . V 3 HOH F 14 614 614 HOH HOH . V 3 HOH F 15 615 615 HOH HOH . V 3 HOH F 16 616 616 HOH HOH . V 3 HOH F 17 617 617 HOH HOH . V 3 HOH F 18 618 618 HOH HOH . V 3 HOH F 19 619 619 HOH HOH . V 3 HOH F 20 620 620 HOH HOH . V 3 HOH F 21 621 621 HOH HOH . V 3 HOH F 22 622 622 HOH HOH . V 3 HOH F 23 623 623 HOH HOH . V 3 HOH F 24 624 624 HOH HOH . V 3 HOH F 25 625 625 HOH HOH . W 3 HOH G 1 703 703 HOH HOH . W 3 HOH G 2 704 704 HOH HOH . W 3 HOH G 3 705 705 HOH HOH . W 3 HOH G 4 706 706 HOH HOH . W 3 HOH G 5 707 707 HOH HOH . W 3 HOH G 6 708 708 HOH HOH . W 3 HOH G 7 709 709 HOH HOH . W 3 HOH G 8 710 710 HOH HOH . W 3 HOH G 9 711 711 HOH HOH . W 3 HOH G 10 712 712 HOH HOH . W 3 HOH G 11 713 713 HOH HOH . W 3 HOH G 12 714 714 HOH HOH . W 3 HOH G 13 715 715 HOH HOH . W 3 HOH G 14 716 716 HOH HOH . W 3 HOH G 15 717 717 HOH HOH . W 3 HOH G 16 718 718 HOH HOH . W 3 HOH G 17 719 719 HOH HOH . W 3 HOH G 18 720 720 HOH HOH . W 3 HOH G 19 721 721 HOH HOH . W 3 HOH G 20 722 722 HOH HOH . W 3 HOH G 21 723 723 HOH HOH . W 3 HOH G 22 724 724 HOH HOH . W 3 HOH G 23 725 725 HOH HOH . W 3 HOH G 24 801 801 HOH HOH . W 3 HOH G 25 802 802 HOH HOH . X 3 HOH H 1 701 701 HOH HOH . X 3 HOH H 2 702 702 HOH HOH . X 3 HOH H 3 803 803 HOH HOH . X 3 HOH H 4 804 804 HOH HOH . X 3 HOH H 5 805 805 HOH HOH . X 3 HOH H 6 806 806 HOH HOH . X 3 HOH H 7 807 807 HOH HOH . X 3 HOH H 8 808 808 HOH HOH . X 3 HOH H 9 809 809 HOH HOH . X 3 HOH H 10 810 810 HOH HOH . X 3 HOH H 11 811 811 HOH HOH . X 3 HOH H 12 812 812 HOH HOH . X 3 HOH H 13 813 813 HOH HOH . X 3 HOH H 14 814 814 HOH HOH . X 3 HOH H 15 815 815 HOH HOH . X 3 HOH H 16 816 816 HOH HOH . X 3 HOH H 17 817 817 HOH HOH . X 3 HOH H 18 818 818 HOH HOH . X 3 HOH H 19 819 819 HOH HOH . X 3 HOH H 20 820 820 HOH HOH . X 3 HOH H 21 821 821 HOH HOH . X 3 HOH H 22 822 822 HOH HOH . X 3 HOH H 23 823 823 HOH HOH . X 3 HOH H 24 824 824 HOH HOH . X 3 HOH H 25 825 825 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . L 2 68.592 67.799 143.312 1 48.44 ? PG DTP 301 D 1 HETATM 2 O O1G DTP . . . L 2 68.299 66.35 143.327 1 48.53 ? O1G DTP 301 D 1 HETATM 3 O O2G DTP . . . L 2 70.167 68.067 143.323 1 48.6 ? O2G DTP 301 D 1 HETATM 4 O O3G DTP . . . L 2 67.941 68.425 142.003 1 47.48 ? O3G DTP 301 D 1 HETATM 5 P PB DTP . . . L 2 66.649 69.279 144.939 1 49.84 ? PB DTP 301 D 1 HETATM 6 O O1B DTP . . . L 2 66.317 69.331 146.368 1 50.17 ? O1B DTP 301 D 1 HETATM 7 O O2B DTP . . . L 2 65.401 68.855 144.034 1 50.97 ? O2B DTP 301 D 1 HETATM 8 O O3B DTP . . . L 2 67.971 68.454 144.631 1 49.65 ? O3B DTP 301 D 1 HETATM 9 P PA DTP . . . L 2 68.062 71.417 143.544 1 54.64 ? PA DTP 301 D 1 HETATM 10 O O1A DTP . . . L 2 67.518 71.71 142.196 1 54.97 ? O1A DTP 301 D 1 HETATM 11 O O2A DTP . . . L 2 69.538 70.776 143.575 1 55.86 ? O2A DTP 301 D 1 HETATM 12 O O3A DTP . . . L 2 67.044 70.74 144.572 1 51.27 ? O3A DTP 301 D 1 HETATM 13 O O5' DTP . . . L 2 68.176 72.847 144.198 1 50.88 ? O5' DTP 301 D 1 HETATM 14 C C5' DTP . . . L 2 67.659 72.88 145.504 1 43.24 ? C5' DTP 301 D 1 HETATM 15 C C4' DTP . . . L 2 68.059 73.993 146.415 1 37.74 ? C4' DTP 301 D 1 HETATM 16 O O4' DTP . . . L 2 67.381 75.175 145.942 1 34.68 ? O4' DTP 301 D 1 HETATM 17 C C3' DTP . . . L 2 67.218 73.392 147.55 1 35.73 ? C3' DTP 301 D 1 HETATM 18 O O3' DTP . . . L 2 67.692 73.613 148.864 1 34.7 ? O3' DTP 301 D 1 HETATM 19 C C2' DTP . . . L 2 65.795 73.872 147.208 1 34.16 ? C2' DTP 301 D 1 HETATM 20 C C1' DTP . . . L 2 66.081 75.221 146.544 1 30.03 ? C1' DTP 301 D 1 HETATM 21 N N9 DTP . . . L 2 65.113 75.739 145.581 1 26.44 ? N9 DTP 301 D 1 HETATM 22 C C8 DTP . . . L 2 64.841 75.282 144.333 1 25.08 ? C8 DTP 301 D 1 HETATM 23 N N7 DTP . . . L 2 63.944 76.033 143.776 1 24.05 ? N7 DTP 301 D 1 HETATM 24 C C5 DTP . . . L 2 63.609 77.025 144.63 1 23.03 ? C5 DTP 301 D 1 HETATM 25 C C6 DTP . . . L 2 62.729 78.109 144.589 1 22.29 ? C6 DTP 301 D 1 HETATM 26 N N6 DTP . . . L 2 61.966 78.319 143.454 1 22.01 ? N6 DTP 301 D 1 HETATM 27 N N1 DTP . . . L 2 62.646 78.911 145.649 1 22.05 ? N1 DTP 301 D 1 HETATM 28 C C2 DTP . . . L 2 63.373 78.712 146.727 1 22.51 ? C2 DTP 301 D 1 HETATM 29 N N3 DTP . . . L 2 64.207 77.708 146.798 1 23.32 ? N3 DTP 301 D 1 HETATM 30 C C4 DTP . . . L 2 64.352 76.852 145.788 1 24.09 ? C4 DTP 301 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #