data_2OCV # _model_server_result.job_id dLuBBgwd2dyf0q84x7_T7w _model_server_result.datetime_utc '2024-12-27 16:11:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ocv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2OCV # _exptl.entry_id 2OCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.54 _cell.angle_gamma 90 _cell.entry_id 2OCV _cell.length_a 136.77 _cell.length_b 47.51 _cell.length_c 43.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 301 NAG 3 n C NAG 2 C 2 NAG C 302 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 C C1 NAG . C NAG 1 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 193 B ASN 186 1_555 G C1 NAG . B NAG 304 1_555 A ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2OCV _atom_sites.fract_transf_matrix[1][1] 0.007312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000709 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG B 1 301 303 NAG NAG . E 4 NAG B 1 302 304 NAG NAG . F 4 NAG B 1 303 305 NAG NAG . G 4 NAG B 1 304 306 NAG NAG . H 5 HOH A 1 101 107 HOH HOH . H 5 HOH A 2 102 125 HOH HOH . H 5 HOH A 3 103 73 HOH HOH . H 5 HOH A 4 104 19 HOH HOH . H 5 HOH A 5 105 76 HOH HOH . H 5 HOH A 6 106 47 HOH HOH . H 5 HOH A 7 107 1 HOH HOH . H 5 HOH A 8 108 101 HOH HOH . H 5 HOH A 9 109 35 HOH HOH . H 5 HOH A 10 110 113 HOH HOH . H 5 HOH A 11 111 130 HOH HOH . H 5 HOH A 12 112 53 HOH HOH . H 5 HOH A 13 113 58 HOH HOH . H 5 HOH A 14 114 115 HOH HOH . H 5 HOH A 15 115 118 HOH HOH . H 5 HOH A 16 116 146 HOH HOH . H 5 HOH A 17 117 131 HOH HOH . H 5 HOH A 18 118 134 HOH HOH . I 5 HOH B 1 401 84 HOH HOH . I 5 HOH B 2 402 64 HOH HOH . I 5 HOH B 3 403 94 HOH HOH . I 5 HOH B 4 404 140 HOH HOH . I 5 HOH B 5 405 66 HOH HOH . I 5 HOH B 6 406 23 HOH HOH . I 5 HOH B 7 407 24 HOH HOH . I 5 HOH B 8 408 85 HOH HOH . I 5 HOH B 9 409 89 HOH HOH . I 5 HOH B 10 410 153 HOH HOH . I 5 HOH B 11 411 87 HOH HOH . I 5 HOH B 12 412 152 HOH HOH . I 5 HOH B 13 413 28 HOH HOH . I 5 HOH B 14 414 65 HOH HOH . I 5 HOH B 15 415 78 HOH HOH . I 5 HOH B 16 416 13 HOH HOH . I 5 HOH B 17 417 25 HOH HOH . I 5 HOH B 18 418 60 HOH HOH . I 5 HOH B 19 419 112 HOH HOH . I 5 HOH B 20 420 7 HOH HOH . I 5 HOH B 21 421 90 HOH HOH . I 5 HOH B 22 422 51 HOH HOH . I 5 HOH B 23 423 5 HOH HOH . I 5 HOH B 24 424 154 HOH HOH . I 5 HOH B 25 425 38 HOH HOH . I 5 HOH B 26 426 27 HOH HOH . I 5 HOH B 27 427 98 HOH HOH . I 5 HOH B 28 428 22 HOH HOH . I 5 HOH B 29 429 95 HOH HOH . I 5 HOH B 30 430 55 HOH HOH . I 5 HOH B 31 431 44 HOH HOH . I 5 HOH B 32 432 126 HOH HOH . I 5 HOH B 33 433 86 HOH HOH . I 5 HOH B 34 434 40 HOH HOH . I 5 HOH B 35 435 104 HOH HOH . I 5 HOH B 36 436 77 HOH HOH . I 5 HOH B 37 437 2 HOH HOH . I 5 HOH B 38 438 133 HOH HOH . I 5 HOH B 39 439 39 HOH HOH . I 5 HOH B 40 440 9 HOH HOH . I 5 HOH B 41 441 62 HOH HOH . I 5 HOH B 42 442 29 HOH HOH . I 5 HOH B 43 443 71 HOH HOH . I 5 HOH B 44 444 15 HOH HOH . I 5 HOH B 45 445 83 HOH HOH . I 5 HOH B 46 446 143 HOH HOH . I 5 HOH B 47 447 6 HOH HOH . I 5 HOH B 48 448 103 HOH HOH . I 5 HOH B 49 449 26 HOH HOH . I 5 HOH B 50 450 20 HOH HOH . I 5 HOH B 51 451 138 HOH HOH . I 5 HOH B 52 452 67 HOH HOH . I 5 HOH B 53 453 34 HOH HOH . I 5 HOH B 54 454 72 HOH HOH . I 5 HOH B 55 455 59 HOH HOH . I 5 HOH B 56 456 4 HOH HOH . I 5 HOH B 57 457 56 HOH HOH . I 5 HOH B 58 458 121 HOH HOH . I 5 HOH B 59 459 63 HOH HOH . I 5 HOH B 60 460 37 HOH HOH . I 5 HOH B 61 461 3 HOH HOH . I 5 HOH B 62 462 17 HOH HOH . I 5 HOH B 63 463 16 HOH HOH . I 5 HOH B 64 464 97 HOH HOH . I 5 HOH B 65 465 50 HOH HOH . I 5 HOH B 66 466 12 HOH HOH . I 5 HOH B 67 467 10 HOH HOH . I 5 HOH B 68 468 81 HOH HOH . I 5 HOH B 69 469 49 HOH HOH . I 5 HOH B 70 470 32 HOH HOH . I 5 HOH B 71 471 74 HOH HOH . I 5 HOH B 72 472 52 HOH HOH . I 5 HOH B 73 473 8 HOH HOH . I 5 HOH B 74 474 33 HOH HOH . I 5 HOH B 75 475 75 HOH HOH . I 5 HOH B 76 476 102 HOH HOH . I 5 HOH B 77 477 30 HOH HOH . I 5 HOH B 78 478 157 HOH HOH . I 5 HOH B 79 479 124 HOH HOH . I 5 HOH B 80 480 105 HOH HOH . I 5 HOH B 81 481 100 HOH HOH . I 5 HOH B 82 482 111 HOH HOH . I 5 HOH B 83 483 99 HOH HOH . I 5 HOH B 84 484 36 HOH HOH . I 5 HOH B 85 485 142 HOH HOH . I 5 HOH B 86 486 114 HOH HOH . I 5 HOH B 87 487 122 HOH HOH . I 5 HOH B 88 488 145 HOH HOH . I 5 HOH B 89 489 14 HOH HOH . I 5 HOH B 90 490 137 HOH HOH . I 5 HOH B 91 491 132 HOH HOH . I 5 HOH B 92 492 61 HOH HOH . I 5 HOH B 93 493 147 HOH HOH . I 5 HOH B 94 494 80 HOH HOH . I 5 HOH B 95 495 45 HOH HOH . I 5 HOH B 96 496 93 HOH HOH . I 5 HOH B 97 497 88 HOH HOH . I 5 HOH B 98 498 57 HOH HOH . I 5 HOH B 99 499 150 HOH HOH . I 5 HOH B 100 500 41 HOH HOH . I 5 HOH B 101 501 109 HOH HOH . I 5 HOH B 102 502 11 HOH HOH . I 5 HOH B 103 503 117 HOH HOH . I 5 HOH B 104 504 106 HOH HOH . I 5 HOH B 105 505 91 HOH HOH . I 5 HOH B 106 506 119 HOH HOH . I 5 HOH B 107 507 156 HOH HOH . I 5 HOH B 108 508 135 HOH HOH . I 5 HOH B 109 509 18 HOH HOH . I 5 HOH B 110 510 96 HOH HOH . I 5 HOH B 111 511 42 HOH HOH . I 5 HOH B 112 512 48 HOH HOH . I 5 HOH B 113 513 69 HOH HOH . I 5 HOH B 114 514 141 HOH HOH . I 5 HOH B 115 515 116 HOH HOH . I 5 HOH B 116 516 46 HOH HOH . I 5 HOH B 117 517 108 HOH HOH . I 5 HOH B 118 518 43 HOH HOH . I 5 HOH B 119 519 148 HOH HOH . I 5 HOH B 120 520 79 HOH HOH . I 5 HOH B 121 521 139 HOH HOH . I 5 HOH B 122 522 120 HOH HOH . I 5 HOH B 123 523 92 HOH HOH . I 5 HOH B 124 524 155 HOH HOH . I 5 HOH B 125 525 123 HOH HOH . I 5 HOH B 126 526 54 HOH HOH . I 5 HOH B 127 527 149 HOH HOH . I 5 HOH B 128 528 31 HOH HOH . I 5 HOH B 129 529 110 HOH HOH . I 5 HOH B 130 530 70 HOH HOH . I 5 HOH B 131 531 128 HOH HOH . I 5 HOH B 132 532 21 HOH HOH . I 5 HOH B 133 533 82 HOH HOH . I 5 HOH B 134 534 127 HOH HOH . I 5 HOH B 135 535 68 HOH HOH . I 5 HOH B 136 536 151 HOH HOH . I 5 HOH B 137 537 144 HOH HOH . I 5 HOH B 138 538 136 HOH HOH . I 5 HOH B 139 539 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 55.078 -22.51 -15.816 1 99.87 ? C1 NAG 301 B 1 HETATM 2 C C2 NAG . . . D 4 55.899 -22.784 -17.176 1 99.87 ? C2 NAG 301 B 1 HETATM 3 C C3 NAG . . . D 4 55.507 -21.617 -18.129 1 99.87 ? C3 NAG 301 B 1 HETATM 4 C C4 NAG . . . D 4 54.019 -21.665 -18.348 1 99.6 ? C4 NAG 301 B 1 HETATM 5 C C5 NAG . . . D 4 53.2 -21.514 -16.998 1 99.81 ? C5 NAG 301 B 1 HETATM 6 C C6 NAG . . . D 4 51.747 -21.583 -17.252 1 99.87 ? C6 NAG 301 B 1 HETATM 7 C C7 NAG . . . D 4 58.221 -22.658 -15.958 1 99.87 ? C7 NAG 301 B 1 HETATM 8 C C8 NAG . . . D 4 59.628 -22.447 -16.29 1 96.35 ? C8 NAG 301 B 1 HETATM 9 N N2 NAG . . . D 4 57.381 -22.638 -17.05 1 99.87 ? N2 NAG 301 B 1 HETATM 10 O O3 NAG . . . D 4 56.193 -21.787 -19.4 1 99.87 ? O3 NAG 301 B 1 HETATM 11 O O4 NAG . . . D 4 53.673 -20.593 -19.218 1 94.9 ? O4 NAG 301 B 1 HETATM 12 O O5 NAG . . . D 4 53.643 -22.631 -16.072 1 99.87 ? O5 NAG 301 B 1 HETATM 13 O O6 NAG . . . D 4 51.223 -22.859 -17.675 1 99.87 ? O6 NAG 301 B 1 HETATM 14 O O7 NAG . . . D 4 57.883 -22.807 -14.874 1 99.78 ? O7 NAG 301 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #