data_2OD0 # _model_server_result.job_id 6hlqdIIZTzWfXs6cC_P0hg _model_server_result.datetime_utc '2024-11-28 08:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2od0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":406}' # _entry.id 2OD0 # _exptl.entry_id 2OD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OD0 _cell.length_a 42.458 _cell.length_b 42.876 _cell.length_c 157.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 9 A SER 9 1_555 A N MSE 10 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 10 A MSE 10 1_555 A N LYS 11 A LYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C SER 23 A SER 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 24 A MSE 24 1_555 A N PHE 25 A PHE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale5 A C THR 35 A THR 35 1_555 A N MSE 36 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 36 A MSE 36 1_555 A N PHE 37 A PHE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale7 B C SER 9 B SER 9 1_555 B N MSE 10 B MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 10 B MSE 10 1_555 B N LYS 11 B LYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C SER 23 B SER 23 1_555 B N MSE 24 B MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 B C MSE 24 B MSE 24 1_555 B N PHE 25 B PHE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C THR 35 B THR 35 1_555 B N MSE 36 B MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 36 B MSE 36 1_555 B N PHE 37 B PHE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? metalc ? metalc1 A NE2 GLN 51 A GLN 51 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc2 N O HOH . A HOH 414 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 296 n n S O2 SO4 doub 297 n n S O3 SO4 sing 298 n n S O4 SO4 sing 299 n n # _atom_sites.entry_id 2OD0 _atom_sites.fract_transf_matrix[1][1] 0.023553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 302 2 MG MG . D 3 SO4 A 1 404 4 SO4 SO4 . E 3 SO4 A 1 405 5 SO4 SO4 . F 3 SO4 A 1 409 9 SO4 SO4 . G 2 MG B 1 301 1 MG MG . H 3 SO4 B 1 401 1 SO4 SO4 . I 3 SO4 B 1 402 2 SO4 SO4 . J 3 SO4 B 1 403 3 SO4 SO4 . K 3 SO4 B 1 406 6 SO4 SO4 . L 3 SO4 B 1 407 7 SO4 SO4 . M 3 SO4 B 1 408 8 SO4 SO4 . N 4 HOH A 1 410 2 HOH HOH . N 4 HOH A 2 411 3 HOH HOH . N 4 HOH A 3 412 4 HOH HOH . N 4 HOH A 4 413 5 HOH HOH . N 4 HOH A 5 414 9 HOH HOH . N 4 HOH A 6 415 12 HOH HOH . N 4 HOH A 7 416 13 HOH HOH . N 4 HOH A 8 417 18 HOH HOH . N 4 HOH A 9 418 20 HOH HOH . N 4 HOH A 10 419 21 HOH HOH . N 4 HOH A 11 420 22 HOH HOH . N 4 HOH A 12 421 23 HOH HOH . N 4 HOH A 13 422 24 HOH HOH . N 4 HOH A 14 423 25 HOH HOH . N 4 HOH A 15 424 26 HOH HOH . N 4 HOH A 16 425 27 HOH HOH . N 4 HOH A 17 426 28 HOH HOH . N 4 HOH A 18 427 29 HOH HOH . N 4 HOH A 19 428 30 HOH HOH . N 4 HOH A 20 429 34 HOH HOH . N 4 HOH A 21 430 39 HOH HOH . N 4 HOH A 22 431 40 HOH HOH . N 4 HOH A 23 432 41 HOH HOH . N 4 HOH A 24 433 44 HOH HOH . N 4 HOH A 25 434 45 HOH HOH . N 4 HOH A 26 435 47 HOH HOH . N 4 HOH A 27 436 48 HOH HOH . N 4 HOH A 28 437 50 HOH HOH . N 4 HOH A 29 438 51 HOH HOH . N 4 HOH A 30 439 53 HOH HOH . N 4 HOH A 31 440 54 HOH HOH . N 4 HOH A 32 441 55 HOH HOH . N 4 HOH A 33 442 56 HOH HOH . N 4 HOH A 34 443 57 HOH HOH . N 4 HOH A 35 444 58 HOH HOH . N 4 HOH A 36 445 59 HOH HOH . N 4 HOH A 37 446 60 HOH HOH . N 4 HOH A 38 447 61 HOH HOH . N 4 HOH A 39 448 64 HOH HOH . N 4 HOH A 40 449 65 HOH HOH . N 4 HOH A 41 450 66 HOH HOH . N 4 HOH A 42 451 67 HOH HOH . N 4 HOH A 43 452 70 HOH HOH . N 4 HOH A 44 453 80 HOH HOH . N 4 HOH A 45 454 81 HOH HOH . N 4 HOH A 46 455 82 HOH HOH . N 4 HOH A 47 456 85 HOH HOH . N 4 HOH A 48 457 86 HOH HOH . N 4 HOH A 49 458 87 HOH HOH . N 4 HOH A 50 459 89 HOH HOH . N 4 HOH A 51 460 92 HOH HOH . N 4 HOH A 52 461 93 HOH HOH . N 4 HOH A 53 462 94 HOH HOH . N 4 HOH A 54 463 96 HOH HOH . N 4 HOH A 55 464 97 HOH HOH . N 4 HOH A 56 465 98 HOH HOH . N 4 HOH A 57 466 99 HOH HOH . N 4 HOH A 58 467 100 HOH HOH . N 4 HOH A 59 468 101 HOH HOH . N 4 HOH A 60 469 106 HOH HOH . N 4 HOH A 61 470 108 HOH HOH . N 4 HOH A 62 471 109 HOH HOH . N 4 HOH A 63 472 114 HOH HOH . N 4 HOH A 64 473 115 HOH HOH . N 4 HOH A 65 474 116 HOH HOH . N 4 HOH A 66 475 120 HOH HOH . N 4 HOH A 67 476 121 HOH HOH . N 4 HOH A 68 477 124 HOH HOH . N 4 HOH A 69 478 125 HOH HOH . N 4 HOH A 70 479 128 HOH HOH . N 4 HOH A 71 480 132 HOH HOH . N 4 HOH A 72 481 134 HOH HOH . N 4 HOH A 73 482 135 HOH HOH . N 4 HOH A 74 483 137 HOH HOH . N 4 HOH A 75 484 139 HOH HOH . N 4 HOH A 76 485 144 HOH HOH . N 4 HOH A 77 486 145 HOH HOH . N 4 HOH A 78 487 146 HOH HOH . N 4 HOH A 79 488 147 HOH HOH . N 4 HOH A 80 489 148 HOH HOH . N 4 HOH A 81 490 150 HOH HOH . N 4 HOH A 82 491 151 HOH HOH . N 4 HOH A 83 492 153 HOH HOH . N 4 HOH A 84 493 154 HOH HOH . N 4 HOH A 85 494 155 HOH HOH . N 4 HOH A 86 495 156 HOH HOH . N 4 HOH A 87 496 157 HOH HOH . N 4 HOH A 88 497 159 HOH HOH . N 4 HOH A 89 498 160 HOH HOH . N 4 HOH A 90 499 162 HOH HOH . N 4 HOH A 91 500 163 HOH HOH . N 4 HOH A 92 501 164 HOH HOH . N 4 HOH A 93 502 168 HOH HOH . N 4 HOH A 94 503 169 HOH HOH . N 4 HOH A 95 504 171 HOH HOH . N 4 HOH A 96 505 172 HOH HOH . N 4 HOH A 97 506 173 HOH HOH . N 4 HOH A 98 507 176 HOH HOH . N 4 HOH A 99 508 180 HOH HOH . N 4 HOH A 100 509 181 HOH HOH . N 4 HOH A 101 510 183 HOH HOH . N 4 HOH A 102 511 185 HOH HOH . N 4 HOH A 103 512 186 HOH HOH . N 4 HOH A 104 513 187 HOH HOH . N 4 HOH A 105 514 189 HOH HOH . N 4 HOH A 106 515 190 HOH HOH . N 4 HOH A 107 516 196 HOH HOH . N 4 HOH A 108 517 198 HOH HOH . N 4 HOH A 109 518 200 HOH HOH . N 4 HOH A 110 519 201 HOH HOH . N 4 HOH A 111 520 203 HOH HOH . N 4 HOH A 112 521 204 HOH HOH . N 4 HOH A 113 522 206 HOH HOH . N 4 HOH A 114 523 209 HOH HOH . N 4 HOH A 115 524 210 HOH HOH . N 4 HOH A 116 525 212 HOH HOH . N 4 HOH A 117 526 214 HOH HOH . N 4 HOH A 118 527 215 HOH HOH . O 4 HOH B 1 409 6 HOH HOH . O 4 HOH B 2 410 7 HOH HOH . O 4 HOH B 3 411 8 HOH HOH . O 4 HOH B 4 412 10 HOH HOH . O 4 HOH B 5 413 14 HOH HOH . O 4 HOH B 6 414 15 HOH HOH . O 4 HOH B 7 415 16 HOH HOH . O 4 HOH B 8 416 17 HOH HOH . O 4 HOH B 9 417 19 HOH HOH . O 4 HOH B 10 418 31 HOH HOH . O 4 HOH B 11 419 32 HOH HOH . O 4 HOH B 12 420 33 HOH HOH . O 4 HOH B 13 421 35 HOH HOH . O 4 HOH B 14 422 37 HOH HOH . O 4 HOH B 15 423 38 HOH HOH . O 4 HOH B 16 424 42 HOH HOH . O 4 HOH B 17 425 43 HOH HOH . O 4 HOH B 18 426 46 HOH HOH . O 4 HOH B 19 427 49 HOH HOH . O 4 HOH B 20 428 52 HOH HOH . O 4 HOH B 21 429 62 HOH HOH . O 4 HOH B 22 430 63 HOH HOH . O 4 HOH B 23 431 68 HOH HOH . O 4 HOH B 24 432 69 HOH HOH . O 4 HOH B 25 433 71 HOH HOH . O 4 HOH B 26 434 72 HOH HOH . O 4 HOH B 27 435 73 HOH HOH . O 4 HOH B 28 436 74 HOH HOH . O 4 HOH B 29 437 75 HOH HOH . O 4 HOH B 30 438 76 HOH HOH . O 4 HOH B 31 439 77 HOH HOH . O 4 HOH B 32 440 78 HOH HOH . O 4 HOH B 33 441 79 HOH HOH . O 4 HOH B 34 442 83 HOH HOH . O 4 HOH B 35 443 84 HOH HOH . O 4 HOH B 36 444 88 HOH HOH . O 4 HOH B 37 445 90 HOH HOH . O 4 HOH B 38 446 91 HOH HOH . O 4 HOH B 39 447 95 HOH HOH . O 4 HOH B 40 448 102 HOH HOH . O 4 HOH B 41 449 103 HOH HOH . O 4 HOH B 42 450 104 HOH HOH . O 4 HOH B 43 451 105 HOH HOH . O 4 HOH B 44 452 107 HOH HOH . O 4 HOH B 45 453 110 HOH HOH . O 4 HOH B 46 454 111 HOH HOH . O 4 HOH B 47 455 112 HOH HOH . O 4 HOH B 48 456 113 HOH HOH . O 4 HOH B 49 457 117 HOH HOH . O 4 HOH B 50 458 118 HOH HOH . O 4 HOH B 51 459 119 HOH HOH . O 4 HOH B 52 460 122 HOH HOH . O 4 HOH B 53 461 123 HOH HOH . O 4 HOH B 54 462 126 HOH HOH . O 4 HOH B 55 463 127 HOH HOH . O 4 HOH B 56 464 129 HOH HOH . O 4 HOH B 57 465 130 HOH HOH . O 4 HOH B 58 466 131 HOH HOH . O 4 HOH B 59 467 133 HOH HOH . O 4 HOH B 60 468 136 HOH HOH . O 4 HOH B 61 469 138 HOH HOH . O 4 HOH B 62 470 142 HOH HOH . O 4 HOH B 63 471 143 HOH HOH . O 4 HOH B 64 472 152 HOH HOH . O 4 HOH B 65 473 158 HOH HOH . O 4 HOH B 66 474 161 HOH HOH . O 4 HOH B 67 475 165 HOH HOH . O 4 HOH B 68 476 166 HOH HOH . O 4 HOH B 69 477 167 HOH HOH . O 4 HOH B 70 478 170 HOH HOH . O 4 HOH B 71 479 174 HOH HOH . O 4 HOH B 72 480 175 HOH HOH . O 4 HOH B 73 481 178 HOH HOH . O 4 HOH B 74 482 179 HOH HOH . O 4 HOH B 75 483 182 HOH HOH . O 4 HOH B 76 484 184 HOH HOH . O 4 HOH B 77 485 188 HOH HOH . O 4 HOH B 78 486 191 HOH HOH . O 4 HOH B 79 487 192 HOH HOH . O 4 HOH B 80 488 193 HOH HOH . O 4 HOH B 81 489 194 HOH HOH . O 4 HOH B 82 490 195 HOH HOH . O 4 HOH B 83 491 197 HOH HOH . O 4 HOH B 84 492 199 HOH HOH . O 4 HOH B 85 493 202 HOH HOH . O 4 HOH B 86 494 205 HOH HOH . O 4 HOH B 87 495 207 HOH HOH . O 4 HOH B 88 496 208 HOH HOH . O 4 HOH B 89 497 211 HOH HOH . O 4 HOH B 90 498 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . K 3 24.749 0.629 52.897 1 66.3 ? S SO4 406 B 1 HETATM 2 O O1 SO4 . . . K 3 25.855 1.523 52.585 1 65.18 ? O1 SO4 406 B 1 HETATM 3 O O2 SO4 . . . K 3 24.083 0.323 51.617 1 66.32 ? O2 SO4 406 B 1 HETATM 4 O O3 SO4 . . . K 3 25.285 -0.569 53.572 1 65.61 ? O3 SO4 406 B 1 HETATM 5 O O4 SO4 . . . K 3 23.799 1.286 53.806 1 65.34 ? O4 SO4 406 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #