data_2OD2 # _model_server_result.job_id g5NH3fRCotoMvs1z55k6Bg _model_server_result.datetime_utc '2024-11-15 01:15:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2od2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1989}' # _entry.id 2OD2 # _exptl.entry_id 2OD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OD2 _cell.length_a 106.639 _cell.length_b 106.639 _cell.length_c 67.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 184.704166 22.573333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 4 B ALA 15 1_555 B N ALY 5 B ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C ALY 5 B ALY 16 1_555 B N ARG 6 B ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 157 A CYS 143 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc2 A SG CYS 160 A CYS 146 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 A SG CYS 184 A CYS 170 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc4 A SG CYS 187 A CYS 173 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 235 n n C1 C2 GOL sing 236 n n C1 H11 GOL sing 237 n n C1 H12 GOL sing 238 n n O1 HO1 GOL sing 239 n n C2 O2 GOL sing 240 n n C2 C3 GOL sing 241 n n C2 H2 GOL sing 242 n n O2 HO2 GOL sing 243 n n C3 O3 GOL sing 244 n n C3 H31 GOL sing 245 n n C3 H32 GOL sing 246 n n O3 HO3 GOL sing 247 n n # _atom_sites.entry_id 2OD2 _atom_sites.fract_transf_matrix[1][1] 0.009377 _atom_sites.fract_transf_matrix[1][2] 0.005414 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 701 ZN ZN . D 4 CNA A 1 1001 1001 CNA CNA . E 5 GOL A 1 1989 1989 GOL GOL . F 5 GOL A 1 1990 1990 GOL GOL . G 5 GOL A 1 1991 1991 GOL GOL . H 5 GOL A 1 1992 1992 GOL GOL . I 6 HOH A 1 1993 1 HOH HOH . I 6 HOH A 2 1994 2 HOH HOH . I 6 HOH A 3 1995 3 HOH HOH . I 6 HOH A 4 1996 4 HOH HOH . I 6 HOH A 5 1997 5 HOH HOH . I 6 HOH A 6 1998 6 HOH HOH . I 6 HOH A 7 1999 7 HOH HOH . I 6 HOH A 8 2000 8 HOH HOH . I 6 HOH A 9 2001 9 HOH HOH . I 6 HOH A 10 2002 10 HOH HOH . I 6 HOH A 11 2003 11 HOH HOH . I 6 HOH A 12 2004 12 HOH HOH . I 6 HOH A 13 2005 13 HOH HOH . I 6 HOH A 14 2006 14 HOH HOH . I 6 HOH A 15 2007 15 HOH HOH . I 6 HOH A 16 2008 16 HOH HOH . I 6 HOH A 17 2009 17 HOH HOH . I 6 HOH A 18 2010 18 HOH HOH . I 6 HOH A 19 2011 19 HOH HOH . I 6 HOH A 20 2012 20 HOH HOH . I 6 HOH A 21 2013 21 HOH HOH . I 6 HOH A 22 2014 22 HOH HOH . I 6 HOH A 23 2015 23 HOH HOH . I 6 HOH A 24 2016 24 HOH HOH . I 6 HOH A 25 2017 25 HOH HOH . I 6 HOH A 26 2018 26 HOH HOH . I 6 HOH A 27 2019 28 HOH HOH . I 6 HOH A 28 2020 29 HOH HOH . I 6 HOH A 29 2021 30 HOH HOH . I 6 HOH A 30 2022 31 HOH HOH . I 6 HOH A 31 2023 32 HOH HOH . I 6 HOH A 32 2024 33 HOH HOH . I 6 HOH A 33 2025 34 HOH HOH . I 6 HOH A 34 2026 35 HOH HOH . I 6 HOH A 35 2027 36 HOH HOH . I 6 HOH A 36 2028 37 HOH HOH . I 6 HOH A 37 2029 38 HOH HOH . I 6 HOH A 38 2030 39 HOH HOH . I 6 HOH A 39 2031 40 HOH HOH . I 6 HOH A 40 2032 41 HOH HOH . I 6 HOH A 41 2033 42 HOH HOH . I 6 HOH A 42 2034 43 HOH HOH . I 6 HOH A 43 2035 44 HOH HOH . I 6 HOH A 44 2036 45 HOH HOH . I 6 HOH A 45 2037 46 HOH HOH . I 6 HOH A 46 2038 47 HOH HOH . I 6 HOH A 47 2039 48 HOH HOH . I 6 HOH A 48 2040 50 HOH HOH . I 6 HOH A 49 2041 51 HOH HOH . I 6 HOH A 50 2042 52 HOH HOH . I 6 HOH A 51 2043 53 HOH HOH . I 6 HOH A 52 2044 54 HOH HOH . I 6 HOH A 53 2045 55 HOH HOH . I 6 HOH A 54 2046 56 HOH HOH . I 6 HOH A 55 2047 57 HOH HOH . I 6 HOH A 56 2048 58 HOH HOH . I 6 HOH A 57 2049 59 HOH HOH . I 6 HOH A 58 2050 60 HOH HOH . I 6 HOH A 59 2051 61 HOH HOH . I 6 HOH A 60 2052 62 HOH HOH . I 6 HOH A 61 2053 63 HOH HOH . I 6 HOH A 62 2054 64 HOH HOH . I 6 HOH A 63 2055 65 HOH HOH . I 6 HOH A 64 2056 66 HOH HOH . I 6 HOH A 65 2057 67 HOH HOH . I 6 HOH A 66 2058 68 HOH HOH . I 6 HOH A 67 2059 69 HOH HOH . I 6 HOH A 68 2060 71 HOH HOH . I 6 HOH A 69 2061 72 HOH HOH . I 6 HOH A 70 2062 73 HOH HOH . I 6 HOH A 71 2063 74 HOH HOH . I 6 HOH A 72 2064 75 HOH HOH . I 6 HOH A 73 2065 77 HOH HOH . I 6 HOH A 74 2066 78 HOH HOH . I 6 HOH A 75 2067 79 HOH HOH . I 6 HOH A 76 2068 80 HOH HOH . I 6 HOH A 77 2069 81 HOH HOH . I 6 HOH A 78 2070 82 HOH HOH . I 6 HOH A 79 2071 83 HOH HOH . I 6 HOH A 80 2072 84 HOH HOH . I 6 HOH A 81 2073 85 HOH HOH . I 6 HOH A 82 2074 86 HOH HOH . I 6 HOH A 83 2075 87 HOH HOH . I 6 HOH A 84 2076 88 HOH HOH . I 6 HOH A 85 2077 89 HOH HOH . I 6 HOH A 86 2078 90 HOH HOH . I 6 HOH A 87 2079 91 HOH HOH . I 6 HOH A 88 2080 92 HOH HOH . I 6 HOH A 89 2081 93 HOH HOH . I 6 HOH A 90 2082 94 HOH HOH . I 6 HOH A 91 2083 95 HOH HOH . I 6 HOH A 92 2084 96 HOH HOH . I 6 HOH A 93 2085 98 HOH HOH . I 6 HOH A 94 2086 99 HOH HOH . I 6 HOH A 95 2087 100 HOH HOH . I 6 HOH A 96 2088 101 HOH HOH . I 6 HOH A 97 2089 103 HOH HOH . I 6 HOH A 98 2090 104 HOH HOH . I 6 HOH A 99 2091 105 HOH HOH . I 6 HOH A 100 2092 106 HOH HOH . I 6 HOH A 101 2093 107 HOH HOH . I 6 HOH A 102 2094 108 HOH HOH . I 6 HOH A 103 2095 109 HOH HOH . I 6 HOH A 104 2096 110 HOH HOH . I 6 HOH A 105 2097 111 HOH HOH . I 6 HOH A 106 2098 112 HOH HOH . I 6 HOH A 107 2099 113 HOH HOH . I 6 HOH A 108 2100 114 HOH HOH . I 6 HOH A 109 2101 115 HOH HOH . I 6 HOH A 110 2102 116 HOH HOH . I 6 HOH A 111 2103 117 HOH HOH . I 6 HOH A 112 2104 119 HOH HOH . I 6 HOH A 113 2105 120 HOH HOH . I 6 HOH A 114 2106 121 HOH HOH . I 6 HOH A 115 2107 122 HOH HOH . I 6 HOH A 116 2108 123 HOH HOH . I 6 HOH A 117 2109 124 HOH HOH . I 6 HOH A 118 2110 126 HOH HOH . I 6 HOH A 119 2111 127 HOH HOH . I 6 HOH A 120 2112 128 HOH HOH . I 6 HOH A 121 2113 130 HOH HOH . I 6 HOH A 122 2114 132 HOH HOH . I 6 HOH A 123 2115 133 HOH HOH . I 6 HOH A 124 2116 134 HOH HOH . I 6 HOH A 125 2117 135 HOH HOH . I 6 HOH A 126 2118 136 HOH HOH . I 6 HOH A 127 2119 137 HOH HOH . I 6 HOH A 128 2120 138 HOH HOH . I 6 HOH A 129 2121 139 HOH HOH . I 6 HOH A 130 2122 140 HOH HOH . I 6 HOH A 131 2123 141 HOH HOH . I 6 HOH A 132 2124 142 HOH HOH . I 6 HOH A 133 2125 143 HOH HOH . I 6 HOH A 134 2126 144 HOH HOH . I 6 HOH A 135 2127 145 HOH HOH . I 6 HOH A 136 2128 146 HOH HOH . I 6 HOH A 137 2129 147 HOH HOH . I 6 HOH A 138 2130 148 HOH HOH . I 6 HOH A 139 2131 149 HOH HOH . I 6 HOH A 140 2132 150 HOH HOH . I 6 HOH A 141 2133 151 HOH HOH . I 6 HOH A 142 2134 152 HOH HOH . I 6 HOH A 143 2135 154 HOH HOH . I 6 HOH A 144 2136 155 HOH HOH . I 6 HOH A 145 2137 156 HOH HOH . I 6 HOH A 146 2138 157 HOH HOH . I 6 HOH A 147 2139 159 HOH HOH . I 6 HOH A 148 2140 163 HOH HOH . I 6 HOH A 149 2141 165 HOH HOH . I 6 HOH A 150 2142 167 HOH HOH . I 6 HOH A 151 2143 168 HOH HOH . I 6 HOH A 152 2144 170 HOH HOH . I 6 HOH A 153 2145 172 HOH HOH . I 6 HOH A 154 2146 173 HOH HOH . I 6 HOH A 155 2147 175 HOH HOH . I 6 HOH A 156 2148 176 HOH HOH . I 6 HOH A 157 2149 177 HOH HOH . I 6 HOH A 158 2150 178 HOH HOH . I 6 HOH A 159 2151 179 HOH HOH . I 6 HOH A 160 2152 180 HOH HOH . J 6 HOH B 1 49 49 HOH HOH . J 6 HOH B 2 70 70 HOH HOH . J 6 HOH B 3 76 76 HOH HOH . J 6 HOH B 4 118 118 HOH HOH . J 6 HOH B 5 158 158 HOH HOH . J 6 HOH B 6 171 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 29.219 67.479 9.347 1 42.41 ? C1 GOL 1989 A 1 HETATM 2 O O1 GOL . . . E 5 28.61 66.215 9.232 1 42.45 ? O1 GOL 1989 A 1 HETATM 3 C C2 GOL . . . E 5 30.598 67.615 9.146 1 47.16 ? C2 GOL 1989 A 1 HETATM 4 O O2 GOL . . . E 5 30.977 67.05 7.987 1 42.12 ? O2 GOL 1989 A 1 HETATM 5 C C3 GOL . . . E 5 30.881 68.223 10.162 1 48.38 ? C3 GOL 1989 A 1 HETATM 6 O O3 GOL . . . E 5 32.059 68.804 10.835 1 51.15 ? O3 GOL 1989 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #