data_2OD5 # _model_server_result.job_id XS4CmQprkR8s0wZMV7CIIw _model_server_result.datetime_utc '2025-01-15 07:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2od5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":122}' # _entry.id 2OD5 # _exptl.entry_id 2OD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OD5 _cell.length_a 64.406 _cell.length_b 64.406 _cell.length_c 133.246 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 64.406 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 64.406 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 10 A SER 9 1_555 A N MSE 11 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 11 A MSE 10 1_555 A N LYS 12 A LYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C THR 41 A THR 40 1_555 A N MSE 42 A MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 42 A MSE 41 1_555 A N ARG 43 A ARG 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 2OD5 _atom_sites.fract_transf_matrix[1][1] 0.01553 _atom_sites.fract_transf_matrix[1][2] 0.00896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 116 1 CL CL . C 3 IMD A 1 117 2 IMD IMD . D 4 EDO A 1 118 3 EDO EDO . E 4 EDO A 1 119 4 EDO EDO . F 4 EDO A 1 120 5 EDO EDO . G 5 1PE A 1 121 6 1PE 1PE . H 5 1PE A 1 122 7 1PE 1PE . I 6 HOH A 1 123 8 HOH HOH . I 6 HOH A 2 124 9 HOH HOH . I 6 HOH A 3 125 10 HOH HOH . I 6 HOH A 4 126 11 HOH HOH . I 6 HOH A 5 127 12 HOH HOH . I 6 HOH A 6 128 13 HOH HOH . I 6 HOH A 7 129 14 HOH HOH . I 6 HOH A 8 130 15 HOH HOH . I 6 HOH A 9 131 16 HOH HOH . I 6 HOH A 10 132 17 HOH HOH . I 6 HOH A 11 133 18 HOH HOH . I 6 HOH A 12 134 19 HOH HOH . I 6 HOH A 13 135 20 HOH HOH . I 6 HOH A 14 136 21 HOH HOH . I 6 HOH A 15 137 22 HOH HOH . I 6 HOH A 16 138 23 HOH HOH . I 6 HOH A 17 139 24 HOH HOH . I 6 HOH A 18 140 25 HOH HOH . I 6 HOH A 19 141 26 HOH HOH . I 6 HOH A 20 142 27 HOH HOH . I 6 HOH A 21 143 28 HOH HOH . I 6 HOH A 22 144 29 HOH HOH . I 6 HOH A 23 145 30 HOH HOH . I 6 HOH A 24 146 31 HOH HOH . I 6 HOH A 25 147 32 HOH HOH . I 6 HOH A 26 148 33 HOH HOH . I 6 HOH A 27 149 34 HOH HOH . I 6 HOH A 28 150 35 HOH HOH . I 6 HOH A 29 151 36 HOH HOH . I 6 HOH A 30 152 37 HOH HOH . I 6 HOH A 31 153 38 HOH HOH . I 6 HOH A 32 154 39 HOH HOH . I 6 HOH A 33 155 40 HOH HOH . I 6 HOH A 34 156 41 HOH HOH . I 6 HOH A 35 157 42 HOH HOH . I 6 HOH A 36 158 43 HOH HOH . I 6 HOH A 37 159 44 HOH HOH . I 6 HOH A 38 160 45 HOH HOH . I 6 HOH A 39 161 46 HOH HOH . I 6 HOH A 40 162 47 HOH HOH . I 6 HOH A 41 163 48 HOH HOH . I 6 HOH A 42 164 49 HOH HOH . I 6 HOH A 43 165 50 HOH HOH . I 6 HOH A 44 166 51 HOH HOH . I 6 HOH A 45 167 52 HOH HOH . I 6 HOH A 46 168 53 HOH HOH . I 6 HOH A 47 169 54 HOH HOH . I 6 HOH A 48 170 55 HOH HOH . I 6 HOH A 49 171 56 HOH HOH . I 6 HOH A 50 172 57 HOH HOH . I 6 HOH A 51 173 58 HOH HOH . I 6 HOH A 52 174 59 HOH HOH . I 6 HOH A 53 175 60 HOH HOH . I 6 HOH A 54 176 61 HOH HOH . I 6 HOH A 55 177 62 HOH HOH . I 6 HOH A 56 178 63 HOH HOH . I 6 HOH A 57 179 64 HOH HOH . I 6 HOH A 58 180 65 HOH HOH . I 6 HOH A 59 181 66 HOH HOH . I 6 HOH A 60 182 67 HOH HOH . I 6 HOH A 61 183 68 HOH HOH . I 6 HOH A 62 184 69 HOH HOH . I 6 HOH A 63 185 70 HOH HOH . I 6 HOH A 64 186 71 HOH HOH . I 6 HOH A 65 187 72 HOH HOH . I 6 HOH A 66 188 73 HOH HOH . I 6 HOH A 67 189 74 HOH HOH . I 6 HOH A 68 190 75 HOH HOH . I 6 HOH A 69 191 76 HOH HOH . I 6 HOH A 70 192 77 HOH HOH . I 6 HOH A 71 193 78 HOH HOH . I 6 HOH A 72 194 79 HOH HOH . I 6 HOH A 73 195 80 HOH HOH . I 6 HOH A 74 196 81 HOH HOH . I 6 HOH A 75 197 82 HOH HOH . I 6 HOH A 76 198 83 HOH HOH . I 6 HOH A 77 199 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 1PE . . . H 5 5.351 8.514 0.796 0.25 30.38 ? C13 1PE 122 A 1 HETATM 2 O OH4 1PE . . . H 5 3.981 8.116 0.726 0.25 29.72 ? OH4 1PE 122 A 1 HETATM 3 C C14 1PE . . . H 5 2.182 9.54 -0.012 0.25 35.55 ? C14 1PE 122 A 1 HETATM 4 C C24 1PE . . . H 5 3.085 9.143 1.153 0.25 33.43 ? C24 1PE 122 A 1 HETATM 5 O OH5 1PE . . . H 5 1.053 8.664 -0.05 0.25 37.42 ? OH5 1PE 122 A 1 HETATM 6 C C15 1PE . . . H 5 -0.858 9.581 -1.217 0.25 37.73 ? C15 1PE 122 A 1 HETATM 7 C C25 1PE . . . H 5 -0.224 9.279 0.143 0.25 38.83 ? C25 1PE 122 A 1 HETATM 8 O OH6 1PE . . . H 5 -2.242 9.943 -1.121 0.25 42.54 ? OH6 1PE 122 A 1 HETATM 9 C C16 1PE . . . H 5 -4.544 9.197 -0.807 0.25 40.39 ? C16 1PE 122 A 1 HETATM 10 C C26 1PE . . . H 5 -3.082 9.034 -0.396 0.25 40.92 ? C26 1PE 122 A 1 HETATM 11 O OH7 1PE . . . H 5 -5.398 8.477 0.096 0.25 38.24 ? OH7 1PE 122 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #