data_2OD9 # _model_server_result.job_id 36CAr3AavsY7zu38H4F3og _model_server_result.datetime_utc '2024-11-15 03:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2od9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 2OD9 # _exptl.entry_id 2OD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OD9 _cell.length_a 105.94 _cell.length_b 105.94 _cell.length_c 67.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 183.493463 22.366667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 4 B ALA 15 1_555 B N ALY 5 B ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C ALY 5 B ALY 16 1_555 B N ARG 6 B ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A SG CYS 157 A CYS 143 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A SG CYS 160 A CYS 146 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A SG CYS 184 A CYS 170 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 A SG CYS 187 A CYS 173 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2OD9 _atom_sites.fract_transf_matrix[1][1] 0.009439 _atom_sites.fract_transf_matrix[1][2] 0.00545 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 701 ZN ZN . D 4 A1R A 1 1001 1001 A1R A1R . E 5 NCA A 1 3721 3721 NCA NCA . F 6 HOH A 1 3722 1 HOH HOH . F 6 HOH A 2 3723 2 HOH HOH . F 6 HOH A 3 3724 3 HOH HOH . F 6 HOH A 4 3725 4 HOH HOH . F 6 HOH A 5 3726 5 HOH HOH . F 6 HOH A 6 3727 6 HOH HOH . F 6 HOH A 7 3728 7 HOH HOH . F 6 HOH A 8 3729 8 HOH HOH . F 6 HOH A 9 3730 9 HOH HOH . F 6 HOH A 10 3731 10 HOH HOH . F 6 HOH A 11 3732 11 HOH HOH . F 6 HOH A 12 3733 12 HOH HOH . F 6 HOH A 13 3734 13 HOH HOH . F 6 HOH A 14 3735 14 HOH HOH . F 6 HOH A 15 3736 15 HOH HOH . F 6 HOH A 16 3737 16 HOH HOH . F 6 HOH A 17 3738 17 HOH HOH . F 6 HOH A 18 3739 18 HOH HOH . F 6 HOH A 19 3740 19 HOH HOH . F 6 HOH A 20 3741 20 HOH HOH . F 6 HOH A 21 3742 21 HOH HOH . F 6 HOH A 22 3743 22 HOH HOH . F 6 HOH A 23 3744 23 HOH HOH . F 6 HOH A 24 3745 24 HOH HOH . F 6 HOH A 25 3746 25 HOH HOH . F 6 HOH A 26 3747 26 HOH HOH . F 6 HOH A 27 3748 27 HOH HOH . F 6 HOH A 28 3749 29 HOH HOH . F 6 HOH A 29 3750 30 HOH HOH . F 6 HOH A 30 3751 31 HOH HOH . F 6 HOH A 31 3752 32 HOH HOH . F 6 HOH A 32 3753 33 HOH HOH . F 6 HOH A 33 3754 34 HOH HOH . F 6 HOH A 34 3755 35 HOH HOH . F 6 HOH A 35 3756 36 HOH HOH . F 6 HOH A 36 3757 37 HOH HOH . F 6 HOH A 37 3758 38 HOH HOH . F 6 HOH A 38 3759 39 HOH HOH . F 6 HOH A 39 3760 40 HOH HOH . F 6 HOH A 40 3761 41 HOH HOH . F 6 HOH A 41 3762 42 HOH HOH . F 6 HOH A 42 3763 43 HOH HOH . F 6 HOH A 43 3764 44 HOH HOH . F 6 HOH A 44 3765 45 HOH HOH . F 6 HOH A 45 3766 47 HOH HOH . F 6 HOH A 46 3767 48 HOH HOH . F 6 HOH A 47 3768 49 HOH HOH . F 6 HOH A 48 3769 50 HOH HOH . F 6 HOH A 49 3770 51 HOH HOH . F 6 HOH A 50 3771 52 HOH HOH . F 6 HOH A 51 3772 53 HOH HOH . F 6 HOH A 52 3773 54 HOH HOH . F 6 HOH A 53 3774 55 HOH HOH . F 6 HOH A 54 3775 56 HOH HOH . F 6 HOH A 55 3776 57 HOH HOH . F 6 HOH A 56 3777 58 HOH HOH . F 6 HOH A 57 3778 59 HOH HOH . F 6 HOH A 58 3779 60 HOH HOH . F 6 HOH A 59 3780 61 HOH HOH . F 6 HOH A 60 3781 62 HOH HOH . F 6 HOH A 61 3782 63 HOH HOH . F 6 HOH A 62 3783 64 HOH HOH . F 6 HOH A 63 3784 65 HOH HOH . F 6 HOH A 64 3785 66 HOH HOH . F 6 HOH A 65 3786 67 HOH HOH . F 6 HOH A 66 3787 68 HOH HOH . F 6 HOH A 67 3788 69 HOH HOH . F 6 HOH A 68 3789 70 HOH HOH . F 6 HOH A 69 3790 71 HOH HOH . F 6 HOH A 70 3791 72 HOH HOH . F 6 HOH A 71 3792 73 HOH HOH . F 6 HOH A 72 3793 74 HOH HOH . F 6 HOH A 73 3794 75 HOH HOH . F 6 HOH A 74 3795 76 HOH HOH . F 6 HOH A 75 3796 77 HOH HOH . F 6 HOH A 76 3797 78 HOH HOH . F 6 HOH A 77 3798 79 HOH HOH . F 6 HOH A 78 3799 80 HOH HOH . F 6 HOH A 79 3800 81 HOH HOH . F 6 HOH A 80 3801 82 HOH HOH . F 6 HOH A 81 3802 83 HOH HOH . F 6 HOH A 82 3803 84 HOH HOH . F 6 HOH A 83 3804 85 HOH HOH . F 6 HOH A 84 3805 86 HOH HOH . F 6 HOH A 85 3806 87 HOH HOH . F 6 HOH A 86 3807 88 HOH HOH . F 6 HOH A 87 3808 89 HOH HOH . F 6 HOH A 88 3809 90 HOH HOH . F 6 HOH A 89 3810 91 HOH HOH . F 6 HOH A 90 3811 92 HOH HOH . F 6 HOH A 91 3812 93 HOH HOH . F 6 HOH A 92 3813 94 HOH HOH . F 6 HOH A 93 3814 95 HOH HOH . F 6 HOH A 94 3815 96 HOH HOH . F 6 HOH A 95 3816 97 HOH HOH . F 6 HOH A 96 3817 98 HOH HOH . F 6 HOH A 97 3818 99 HOH HOH . F 6 HOH A 98 3819 100 HOH HOH . F 6 HOH A 99 3820 101 HOH HOH . F 6 HOH A 100 3821 102 HOH HOH . F 6 HOH A 101 3822 103 HOH HOH . F 6 HOH A 102 3823 104 HOH HOH . F 6 HOH A 103 3824 105 HOH HOH . F 6 HOH A 104 3825 106 HOH HOH . F 6 HOH A 105 3826 107 HOH HOH . F 6 HOH A 106 3827 108 HOH HOH . F 6 HOH A 107 3828 109 HOH HOH . F 6 HOH A 108 3829 110 HOH HOH . F 6 HOH A 109 3830 111 HOH HOH . F 6 HOH A 110 3831 112 HOH HOH . F 6 HOH A 111 3832 113 HOH HOH . F 6 HOH A 112 3833 114 HOH HOH . F 6 HOH A 113 3834 115 HOH HOH . F 6 HOH A 114 3835 116 HOH HOH . G 6 HOH B 1 28 28 HOH HOH . G 6 HOH B 2 46 46 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.952 _atom_site.Cartn_y 57.179 _atom_site.Cartn_z 26.513 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #