data_2ODB # _model_server_result.job_id RhC7ym2GkIRNuug_xh62fg _model_server_result.datetime_utc '2025-03-04 12:10:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2odb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 2ODB # _exptl.entry_id 2ODB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ODB _cell.length_a 162.366 _cell.length_b 162.366 _cell.length_c 45.968 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ODB _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 A,B,C,D,E,F,G,H,I,J 3 1,3 A,B,C,D,E,F,G,H,I,J 4 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -30.645333 3 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 81.183 -140.613081 -7.661333 4 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -22.984 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 18 A THR 17 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 G O1G GCP . A GCP 200 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 G O2B GCP . A GCP 200 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 D MG MG . A MG 205 1_555 I O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc6 D MG MG . A MG 205 1_555 I O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 342 n n S O2 SO4 doub 343 n n S O3 SO4 sing 344 n n S O4 SO4 sing 345 n n # _atom_sites.entry_id 2ODB _atom_sites.fract_transf_matrix[1][1] 0.006159 _atom_sites.fract_transf_matrix[1][2] 0.003556 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 204 204 CL CL . D 4 MG A 1 205 205 MG MG . E 5 SO4 A 1 202 202 SO4 SO4 . F 5 SO4 A 1 203 203 SO4 SO4 . G 6 GCP A 1 200 200 GCP GCP . H 5 SO4 B 1 201 201 SO4 SO4 . I 7 HOH A 1 206 1 HOH HOH . I 7 HOH A 2 207 2 HOH HOH . I 7 HOH A 3 208 3 HOH HOH . I 7 HOH A 4 209 4 HOH HOH . I 7 HOH A 5 210 7 HOH HOH . I 7 HOH A 6 211 8 HOH HOH . I 7 HOH A 7 212 9 HOH HOH . I 7 HOH A 8 213 14 HOH HOH . I 7 HOH A 9 214 16 HOH HOH . I 7 HOH A 10 215 17 HOH HOH . I 7 HOH A 11 216 18 HOH HOH . I 7 HOH A 12 217 19 HOH HOH . I 7 HOH A 13 218 20 HOH HOH . I 7 HOH A 14 219 23 HOH HOH . I 7 HOH A 15 220 24 HOH HOH . I 7 HOH A 16 221 25 HOH HOH . I 7 HOH A 17 222 26 HOH HOH . I 7 HOH A 18 223 27 HOH HOH . I 7 HOH A 19 224 28 HOH HOH . I 7 HOH A 20 225 29 HOH HOH . I 7 HOH A 21 226 30 HOH HOH . I 7 HOH A 22 227 33 HOH HOH . I 7 HOH A 23 228 34 HOH HOH . I 7 HOH A 24 229 35 HOH HOH . I 7 HOH A 25 230 36 HOH HOH . I 7 HOH A 26 231 38 HOH HOH . I 7 HOH A 27 232 39 HOH HOH . I 7 HOH A 28 233 44 HOH HOH . I 7 HOH A 29 234 45 HOH HOH . I 7 HOH A 30 235 46 HOH HOH . I 7 HOH A 31 236 48 HOH HOH . J 7 HOH B 1 202 5 HOH HOH . J 7 HOH B 2 203 10 HOH HOH . J 7 HOH B 3 204 11 HOH HOH . J 7 HOH B 4 205 12 HOH HOH . J 7 HOH B 5 206 15 HOH HOH . J 7 HOH B 6 207 21 HOH HOH . J 7 HOH B 7 208 22 HOH HOH . J 7 HOH B 8 209 31 HOH HOH . J 7 HOH B 9 210 32 HOH HOH . J 7 HOH B 10 211 37 HOH HOH . J 7 HOH B 11 212 40 HOH HOH . J 7 HOH B 12 213 41 HOH HOH . J 7 HOH B 13 214 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 5 31.413 -54.308 -15.305 0.5 67.95 ? S SO4 201 B 1 HETATM 2 O O1 SO4 . . . H 5 32.755 -54.535 -14.768 0.5 68.31 ? O1 SO4 201 B 1 HETATM 3 O O2 SO4 . . . H 5 31.421 -53.29 -16.359 0.5 68.49 ? O2 SO4 201 B 1 HETATM 4 O O3 SO4 . . . H 5 30.936 -55.565 -15.884 0.5 68.25 ? O3 SO4 201 B 1 HETATM 5 O O4 SO4 . . . H 5 30.547 -53.859 -14.212 0.5 68.4 ? O4 SO4 201 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 1359 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #