data_2ODJ # _model_server_result.job_id gCJMGvo1IJOIf7vOZdH2ZA _model_server_result.datetime_utc '2024-12-02 16:03:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2odj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":429}' # _entry.id 2ODJ # _exptl.entry_id 2ODJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.63 _cell.angle_gamma 90 _cell.entry_id 2ODJ _cell.length_a 111.37 _cell.length_b 97.525 _cell.length_c 95.788 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ODJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 1 1_555 A N MSE 2 A MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 2 A MSE 2 1_555 A N PHE 3 A PHE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C THR 111 A THR 111 1_555 A N MSE 112 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 112 A MSE 112 1_555 A N LEU 113 A LEU 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C GLU 117 A GLU 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 118 A MSE 118 1_555 A N GLN 119 A GLN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C PHE 334 A PHE 334 1_555 A N MSE 335 A MSE 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 335 A MSE 335 1_555 A N VAL 336 A VAL 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C LYS 348 A LYS 348 1_555 A N MSE 349 A MSE 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 349 A MSE 349 1_555 A N SER 350 A SER 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C GLY 1 B GLY 1 1_555 B N MSE 2 B MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 2 B MSE 2 1_555 B N PHE 3 B PHE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C THR 111 B THR 111 1_555 B N MSE 112 B MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 112 B MSE 112 1_555 B N LEU 113 B LEU 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C GLU 117 B GLU 117 1_555 B N MSE 118 B MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 118 B MSE 118 1_555 B N GLN 119 B GLN 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 B C PHE 334 B PHE 334 1_555 B N MSE 335 B MSE 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 B C MSE 335 B MSE 335 1_555 B N VAL 336 B VAL 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C LYS 348 B LYS 348 1_555 B N MSE 349 B MSE 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C MSE 349 B MSE 349 1_555 B N SER 350 B SER 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 2ODJ _atom_sites.fract_transf_matrix[1][1] 0.008979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005107 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C8E A 1 429 2 C8E C8E . D 2 C8E A 1 430 3 C8E C8E . E 2 C8E A 1 431 5 C8E C8E . F 2 C8E A 1 432 6 C8E C8E . G 2 C8E A 1 433 7 C8E C8E . H 2 C8E A 1 434 8 C8E C8E . I 2 C8E B 1 429 1 C8E C8E . J 2 C8E B 1 430 4 C8E C8E . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . C 2 20.66 -5.346 65.674 1 70.93 ? C1 C8E 429 A 1 HETATM 2 C C2 C8E . . . C 2 20.601 -3.893 65.565 1 71.87 ? C2 C8E 429 A 1 HETATM 3 C C3 C8E . . . C 2 19.451 -3.385 64.818 1 72.45 ? C3 C8E 429 A 1 HETATM 4 C C4 C8E . . . C 2 18.602 -2.671 65.761 1 73.41 ? C4 C8E 429 A 1 HETATM 5 C C5 C8E . . . C 2 17.777 -1.688 65.01 1 74.55 ? C5 C8E 429 A 1 HETATM 6 C C6 C8E . . . C 2 17.704 -0.409 65.708 1 75.39 ? C6 C8E 429 A 1 HETATM 7 C C7 C8E . . . C 2 18.657 0.374 64.924 1 75.84 ? C7 C8E 429 A 1 HETATM 8 C C8 C8E . . . C 2 18.007 1.606 64.425 1 77.06 ? C8 C8E 429 A 1 HETATM 9 O O9 C8E . . . C 2 18.429 2.388 63.314 1 78.19 ? O9 C8E 429 A 1 HETATM 10 C C10 C8E . . . C 2 19.726 2.969 63.334 1 78.54 ? C10 C8E 429 A 1 HETATM 11 C C11 C8E . . . C 2 19.862 3.715 62.034 1 78.93 ? C11 C8E 429 A 1 HETATM 12 O O12 C8E . . . C 2 21.196 4.269 61.867 1 79.08 ? O12 C8E 429 A 1 HETATM 13 C C13 C8E . . . C 2 22.078 3.588 60.899 1 77.81 ? C13 C8E 429 A 1 HETATM 14 C C14 C8E . . . C 2 22.174 2.041 60.663 1 76.66 ? C14 C8E 429 A 1 HETATM 15 O O15 C8E . . . C 2 22.579 0.951 61.541 1 76.42 ? O15 C8E 429 A 1 HETATM 16 C C16 C8E . . . C 2 23.988 0.695 61.427 1 75.74 ? C16 C8E 429 A 1 HETATM 17 C C17 C8E . . . C 2 24.341 -0.351 60.357 1 75.32 ? C17 C8E 429 A 1 HETATM 18 O O18 C8E . . . C 2 23.506 -1.507 60.088 1 75.48 ? O18 C8E 429 A 1 HETATM 19 C C19 C8E . . . C 2 23.864 -2.668 60.898 1 73.77 ? C19 C8E 429 A 1 HETATM 20 C C20 C8E . . . C 2 22.812 -3.684 61.475 1 72.63 ? C20 C8E 429 A 1 HETATM 21 O O21 C8E . . . C 2 23.123 -5.082 61.446 1 71.58 ? O21 C8E 429 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #