data_2ODQ # _model_server_result.job_id H_1tkmpaj0CifyvwIFDxWQ _model_server_result.datetime_utc '2024-11-04 23:24:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2odq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":808}' # _entry.id 2ODQ # _exptl.entry_id 2ODQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.1 _cell.angle_gamma 90 _cell.entry_id 2ODQ _cell.length_a 51.354 _cell.length_b 84.201 _cell.length_c 74.426 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ODQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG S 801 NAG 2 n B NAG 2 B 2 NAG S 802 NAG 2 n B NAG 3 B 3 NAG S 803 NAG 3 n C NAG 1 C 1 NAG S 804 NAG 3 n C NAG 2 C 2 NAG S 805 NAG 3 n C NAG 3 C 3 NAG S 806 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 220 A CYS 443 1_555 A SG CYS 338 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf2 A SG CYS 249 A CYS 472 1_555 A SG CYS 265 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? disulf ? disulf3 A SG CYS 341 A CYS 564 1_555 A SG CYS 357 A CYS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 395 A CYS 618 1_555 A SG CYS 422 A CYS 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf5 A SG CYS 432 A CYS 655 1_555 A SG CYS 462 A CYS 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 90 A ASN 313 1_555 E C1 NAG . A NAG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale2 A ND2 ASN 224 A ASN 447 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale3 A ND2 ASN 378 A ASN 601 1_555 D C1 NAG . A NAG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale4 A ND2 ASN 408 A ASN 631 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? covale ? covale5 B O3 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale8 C O4 NAG . C NAG 2 1_555 C C1 NAG . C NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2ODQ _atom_sites.fract_transf_matrix[1][1] 0.019473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000713 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 807 807 NAG NAG . E 4 NAG A 1 808 808 NAG NAG . F 5 HOH A 1 1 1 HOH HOH . F 5 HOH A 2 2 2 HOH HOH . F 5 HOH A 3 3 3 HOH HOH . F 5 HOH A 4 4 4 HOH HOH . F 5 HOH A 5 5 5 HOH HOH . F 5 HOH A 6 6 6 HOH HOH . F 5 HOH A 7 7 7 HOH HOH . F 5 HOH A 8 8 8 HOH HOH . F 5 HOH A 9 9 9 HOH HOH . F 5 HOH A 10 10 10 HOH HOH . F 5 HOH A 11 11 11 HOH HOH . F 5 HOH A 12 12 12 HOH HOH . F 5 HOH A 13 13 13 HOH HOH . F 5 HOH A 14 14 14 HOH HOH . F 5 HOH A 15 15 15 HOH HOH . F 5 HOH A 16 16 16 HOH HOH . F 5 HOH A 17 17 17 HOH HOH . F 5 HOH A 18 18 18 HOH HOH . F 5 HOH A 19 19 19 HOH HOH . F 5 HOH A 20 20 20 HOH HOH . F 5 HOH A 21 21 21 HOH HOH . F 5 HOH A 22 22 22 HOH HOH . F 5 HOH A 23 23 23 HOH HOH . F 5 HOH A 24 24 24 HOH HOH . F 5 HOH A 25 25 25 HOH HOH . F 5 HOH A 26 26 26 HOH HOH . F 5 HOH A 27 27 27 HOH HOH . F 5 HOH A 28 28 28 HOH HOH . F 5 HOH A 29 29 29 HOH HOH . F 5 HOH A 30 30 30 HOH HOH . F 5 HOH A 31 31 31 HOH HOH . F 5 HOH A 32 32 32 HOH HOH . F 5 HOH A 33 33 33 HOH HOH . F 5 HOH A 34 34 34 HOH HOH . F 5 HOH A 35 35 35 HOH HOH . F 5 HOH A 36 36 36 HOH HOH . F 5 HOH A 37 37 37 HOH HOH . F 5 HOH A 38 38 38 HOH HOH . F 5 HOH A 39 39 39 HOH HOH . F 5 HOH A 40 40 40 HOH HOH . F 5 HOH A 41 41 41 HOH HOH . F 5 HOH A 42 42 42 HOH HOH . F 5 HOH A 43 43 43 HOH HOH . F 5 HOH A 44 44 44 HOH HOH . F 5 HOH A 45 45 45 HOH HOH . F 5 HOH A 46 46 46 HOH HOH . F 5 HOH A 47 47 47 HOH HOH . F 5 HOH A 48 48 48 HOH HOH . F 5 HOH A 49 49 49 HOH HOH . F 5 HOH A 50 50 50 HOH HOH . F 5 HOH A 51 51 51 HOH HOH . F 5 HOH A 52 52 52 HOH HOH . F 5 HOH A 53 53 53 HOH HOH . F 5 HOH A 54 54 54 HOH HOH . F 5 HOH A 55 55 55 HOH HOH . F 5 HOH A 56 56 56 HOH HOH . F 5 HOH A 57 57 57 HOH HOH . F 5 HOH A 58 58 58 HOH HOH . F 5 HOH A 59 59 59 HOH HOH . F 5 HOH A 60 60 60 HOH HOH . F 5 HOH A 61 61 61 HOH HOH . F 5 HOH A 62 62 62 HOH HOH . F 5 HOH A 63 63 63 HOH HOH . F 5 HOH A 64 64 64 HOH HOH . F 5 HOH A 65 65 65 HOH HOH . F 5 HOH A 66 66 66 HOH HOH . F 5 HOH A 67 67 67 HOH HOH . F 5 HOH A 68 68 68 HOH HOH . F 5 HOH A 69 69 69 HOH HOH . F 5 HOH A 70 70 70 HOH HOH . F 5 HOH A 71 71 71 HOH HOH . F 5 HOH A 72 72 72 HOH HOH . F 5 HOH A 73 73 73 HOH HOH . F 5 HOH A 74 74 74 HOH HOH . F 5 HOH A 75 75 75 HOH HOH . F 5 HOH A 76 76 76 HOH HOH . F 5 HOH A 77 77 77 HOH HOH . F 5 HOH A 78 78 78 HOH HOH . F 5 HOH A 79 79 79 HOH HOH . F 5 HOH A 80 80 80 HOH HOH . F 5 HOH A 81 81 81 HOH HOH . F 5 HOH A 82 82 82 HOH HOH . F 5 HOH A 83 83 83 HOH HOH . F 5 HOH A 84 84 84 HOH HOH . F 5 HOH A 85 85 85 HOH HOH . F 5 HOH A 86 86 86 HOH HOH . F 5 HOH A 87 87 87 HOH HOH . F 5 HOH A 88 88 88 HOH HOH . F 5 HOH A 89 89 89 HOH HOH . F 5 HOH A 90 90 90 HOH HOH . F 5 HOH A 91 91 91 HOH HOH . F 5 HOH A 92 92 92 HOH HOH . F 5 HOH A 93 93 93 HOH HOH . F 5 HOH A 94 94 94 HOH HOH . F 5 HOH A 95 95 95 HOH HOH . F 5 HOH A 96 96 96 HOH HOH . F 5 HOH A 97 97 97 HOH HOH . F 5 HOH A 98 98 98 HOH HOH . F 5 HOH A 99 99 99 HOH HOH . F 5 HOH A 100 100 100 HOH HOH . F 5 HOH A 101 101 101 HOH HOH . F 5 HOH A 102 102 102 HOH HOH . F 5 HOH A 103 103 103 HOH HOH . F 5 HOH A 104 104 104 HOH HOH . F 5 HOH A 105 105 105 HOH HOH . F 5 HOH A 106 106 106 HOH HOH . F 5 HOH A 107 107 107 HOH HOH . F 5 HOH A 108 108 108 HOH HOH . F 5 HOH A 109 109 109 HOH HOH . F 5 HOH A 110 110 110 HOH HOH . F 5 HOH A 111 111 111 HOH HOH . F 5 HOH A 112 112 112 HOH HOH . F 5 HOH A 113 113 113 HOH HOH . F 5 HOH A 114 114 114 HOH HOH . F 5 HOH A 115 115 115 HOH HOH . F 5 HOH A 116 116 116 HOH HOH . F 5 HOH A 117 117 117 HOH HOH . F 5 HOH A 118 118 118 HOH HOH . F 5 HOH A 119 119 119 HOH HOH . F 5 HOH A 120 120 120 HOH HOH . F 5 HOH A 121 121 121 HOH HOH . F 5 HOH A 122 122 122 HOH HOH . F 5 HOH A 123 123 123 HOH HOH . F 5 HOH A 124 124 124 HOH HOH . F 5 HOH A 125 125 125 HOH HOH . F 5 HOH A 126 126 126 HOH HOH . F 5 HOH A 127 127 127 HOH HOH . F 5 HOH A 128 128 128 HOH HOH . F 5 HOH A 129 129 129 HOH HOH . F 5 HOH A 130 130 130 HOH HOH . F 5 HOH A 131 131 131 HOH HOH . F 5 HOH A 132 132 132 HOH HOH . F 5 HOH A 133 133 133 HOH HOH . F 5 HOH A 134 201 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 29.179 39.574 -26.377 1 52.11 ? C1 NAG 808 A 1 HETATM 2 C C2 NAG . . . E 4 30.105 40.26 -25.333 1 51.56 ? C2 NAG 808 A 1 HETATM 3 C C3 NAG . . . E 4 30.67 41.597 -25.869 1 53.16 ? C3 NAG 808 A 1 HETATM 4 C C4 NAG . . . E 4 31.408 41.361 -27.227 1 56.66 ? C4 NAG 808 A 1 HETATM 5 C C5 NAG . . . E 4 30.417 40.724 -28.242 1 56.19 ? C5 NAG 808 A 1 HETATM 6 C C6 NAG . . . E 4 31.021 40.32 -29.599 1 57.98 ? C6 NAG 808 A 1 HETATM 7 C C7 NAG . . . E 4 29.809 39.839 -22.945 1 48.88 ? C7 NAG 808 A 1 HETATM 8 C C8 NAG . . . E 4 28.986 39.935 -21.68 1 47.94 ? C8 NAG 808 A 1 HETATM 9 N N2 NAG . . . E 4 29.396 40.445 -24.063 1 49.99 ? N2 NAG 808 A 1 HETATM 10 O O3 NAG . . . E 4 31.39 42.318 -24.865 1 48.2 ? O3 NAG 808 A 1 HETATM 11 O O4 NAG . . . E 4 32.058 42.53 -27.76 1 55.85 ? O4 NAG 808 A 1 HETATM 12 O O5 NAG . . . E 4 29.742 39.574 -27.72 1 55.91 ? O5 NAG 808 A 1 HETATM 13 O O6 NAG . . . E 4 31.952 39.247 -29.598 1 58.47 ? O6 NAG 808 A 1 HETATM 14 O O7 NAG . . . E 4 30.849 39.214 -22.938 1 46.69 ? O7 NAG 808 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #