data_2OFX # _model_server_result.job_id jv0kvMOS81YZFxz2dPQfYg _model_server_result.datetime_utc '2024-11-06 04:32:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ofx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 2OFX # _exptl.entry_id 2OFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.38 _cell.angle_gamma 90 _cell.entry_id 2OFX _cell.length_a 51.4 _cell.length_b 63.32 _cell.length_c 61.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 46 A THR 66 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc2 C MG MG . A MG 301 1_555 F O3P PPS . A PPS 1100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc3 C MG MG . A MG 301 1_555 G O2B ADP . A ADP 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc4 C MG MG . A MG 301 1_555 M O HOH . A HOH 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 C MG MG . A MG 301 1_555 M O HOH . A HOH 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc6 C MG MG . A MG 301 1_555 M O HOH . A HOH 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 B OG1 THR 46 B THR 66 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc8 H MG MG . B MG 302 1_555 K O3P PPS . B PPS 1200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc9 H MG MG . B MG 302 1_555 L O2B ADP . B ADP 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 H MG MG . B MG 302 1_555 N O HOH . B HOH 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 H MG MG . B MG 302 1_555 N O HOH . B HOH 1438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc12 H MG MG . B MG 302 1_555 N O HOH . B HOH 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 304 n n P O2 PO4 sing 305 n n P O3 PO4 sing 306 n n P O4 PO4 sing 307 n n # _atom_sites.entry_id 2OFX _atom_sites.fract_transf_matrix[1][1] 0.019455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008817 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 301 MG MG . D 3 PO4 A 1 401 401 PO4 PO4 . E 3 PO4 A 1 403 403 PO4 PO4 . F 4 PPS A 1 1100 1100 PPS PPS . G 5 ADP A 1 1300 1300 ADP ADP . H 2 MG B 1 302 302 MG MG . I 3 PO4 B 1 402 402 PO4 PO4 . J 3 PO4 B 1 404 404 PO4 PO4 . K 4 PPS B 1 1200 1200 PPS PPS . L 5 ADP B 1 1400 1400 ADP ADP . M 6 HOH A 1 1301 9 HOH HOH . M 6 HOH A 2 1302 11 HOH HOH . M 6 HOH A 3 1303 12 HOH HOH . M 6 HOH A 4 1304 13 HOH HOH . M 6 HOH A 5 1305 14 HOH HOH . M 6 HOH A 6 1306 15 HOH HOH . M 6 HOH A 7 1307 21 HOH HOH . M 6 HOH A 8 1308 22 HOH HOH . M 6 HOH A 9 1309 24 HOH HOH . M 6 HOH A 10 1310 25 HOH HOH . M 6 HOH A 11 1311 26 HOH HOH . M 6 HOH A 12 1312 27 HOH HOH . M 6 HOH A 13 1313 29 HOH HOH . M 6 HOH A 14 1314 31 HOH HOH . M 6 HOH A 15 1315 33 HOH HOH . M 6 HOH A 16 1316 34 HOH HOH . M 6 HOH A 17 1317 35 HOH HOH . M 6 HOH A 18 1318 38 HOH HOH . M 6 HOH A 19 1319 43 HOH HOH . M 6 HOH A 20 1320 47 HOH HOH . M 6 HOH A 21 1321 49 HOH HOH . M 6 HOH A 22 1322 56 HOH HOH . M 6 HOH A 23 1323 63 HOH HOH . M 6 HOH A 24 1324 64 HOH HOH . M 6 HOH A 25 1325 65 HOH HOH . M 6 HOH A 26 1326 68 HOH HOH . M 6 HOH A 27 1327 70 HOH HOH . M 6 HOH A 28 1328 71 HOH HOH . M 6 HOH A 29 1329 72 HOH HOH . M 6 HOH A 30 1330 74 HOH HOH . M 6 HOH A 31 1331 75 HOH HOH . M 6 HOH A 32 1332 76 HOH HOH . M 6 HOH A 33 1333 78 HOH HOH . M 6 HOH A 34 1334 79 HOH HOH . M 6 HOH A 35 1335 83 HOH HOH . M 6 HOH A 36 1336 86 HOH HOH . M 6 HOH A 37 1337 90 HOH HOH . M 6 HOH A 38 1338 91 HOH HOH . M 6 HOH A 39 1339 92 HOH HOH . M 6 HOH A 40 1340 93 HOH HOH . M 6 HOH A 41 1341 94 HOH HOH . M 6 HOH A 42 1342 95 HOH HOH . M 6 HOH A 43 1343 98 HOH HOH . M 6 HOH A 44 1344 101 HOH HOH . M 6 HOH A 45 1345 104 HOH HOH . M 6 HOH A 46 1346 109 HOH HOH . M 6 HOH A 47 1347 115 HOH HOH . M 6 HOH A 48 1348 120 HOH HOH . M 6 HOH A 49 1349 121 HOH HOH . M 6 HOH A 50 1350 126 HOH HOH . M 6 HOH A 51 1351 127 HOH HOH . M 6 HOH A 52 1352 128 HOH HOH . M 6 HOH A 53 1353 130 HOH HOH . M 6 HOH A 54 1354 131 HOH HOH . M 6 HOH A 55 1355 133 HOH HOH . M 6 HOH A 56 1356 134 HOH HOH . M 6 HOH A 57 1357 136 HOH HOH . M 6 HOH A 58 1358 141 HOH HOH . M 6 HOH A 59 1359 144 HOH HOH . M 6 HOH A 60 1360 148 HOH HOH . M 6 HOH A 61 1361 151 HOH HOH . M 6 HOH A 62 1362 154 HOH HOH . M 6 HOH A 63 1363 155 HOH HOH . M 6 HOH A 64 1364 156 HOH HOH . M 6 HOH A 65 1365 157 HOH HOH . M 6 HOH A 66 1366 166 HOH HOH . M 6 HOH A 67 1367 168 HOH HOH . M 6 HOH A 68 1368 169 HOH HOH . M 6 HOH A 69 1369 170 HOH HOH . M 6 HOH A 70 1370 172 HOH HOH . M 6 HOH A 71 1371 181 HOH HOH . M 6 HOH A 72 1372 182 HOH HOH . M 6 HOH A 73 1373 190 HOH HOH . M 6 HOH A 74 1374 191 HOH HOH . M 6 HOH A 75 1375 193 HOH HOH . M 6 HOH A 76 1376 195 HOH HOH . M 6 HOH A 77 1377 196 HOH HOH . M 6 HOH A 78 1378 197 HOH HOH . M 6 HOH A 79 1379 198 HOH HOH . M 6 HOH A 80 1380 199 HOH HOH . M 6 HOH A 81 1381 200 HOH HOH . M 6 HOH A 82 1382 201 HOH HOH . M 6 HOH A 83 1383 202 HOH HOH . M 6 HOH A 84 1384 203 HOH HOH . M 6 HOH A 85 1385 212 HOH HOH . M 6 HOH A 86 1386 215 HOH HOH . M 6 HOH A 87 1387 220 HOH HOH . M 6 HOH A 88 1388 221 HOH HOH . M 6 HOH A 89 1389 223 HOH HOH . M 6 HOH A 90 1390 239 HOH HOH . M 6 HOH A 91 1391 241 HOH HOH . M 6 HOH A 92 1392 247 HOH HOH . M 6 HOH A 93 1393 248 HOH HOH . M 6 HOH A 94 1394 250 HOH HOH . N 6 HOH B 1 1401 1 HOH HOH . N 6 HOH B 2 1402 2 HOH HOH . N 6 HOH B 3 1403 4 HOH HOH . N 6 HOH B 4 1404 6 HOH HOH . N 6 HOH B 5 1405 7 HOH HOH . N 6 HOH B 6 1406 10 HOH HOH . N 6 HOH B 7 1407 16 HOH HOH . N 6 HOH B 8 1408 17 HOH HOH . N 6 HOH B 9 1409 18 HOH HOH . N 6 HOH B 10 1410 20 HOH HOH . N 6 HOH B 11 1411 23 HOH HOH . N 6 HOH B 12 1412 30 HOH HOH . N 6 HOH B 13 1413 32 HOH HOH . N 6 HOH B 14 1414 36 HOH HOH . N 6 HOH B 15 1415 37 HOH HOH . N 6 HOH B 16 1416 39 HOH HOH . N 6 HOH B 17 1417 41 HOH HOH . N 6 HOH B 18 1418 42 HOH HOH . N 6 HOH B 19 1419 44 HOH HOH . N 6 HOH B 20 1420 45 HOH HOH . N 6 HOH B 21 1421 46 HOH HOH . N 6 HOH B 22 1422 48 HOH HOH . N 6 HOH B 23 1423 50 HOH HOH . N 6 HOH B 24 1424 53 HOH HOH . N 6 HOH B 25 1425 54 HOH HOH . N 6 HOH B 26 1426 55 HOH HOH . N 6 HOH B 27 1427 57 HOH HOH . N 6 HOH B 28 1428 58 HOH HOH . N 6 HOH B 29 1429 59 HOH HOH . N 6 HOH B 30 1430 60 HOH HOH . N 6 HOH B 31 1431 61 HOH HOH . N 6 HOH B 32 1432 62 HOH HOH . N 6 HOH B 33 1433 66 HOH HOH . N 6 HOH B 34 1434 69 HOH HOH . N 6 HOH B 35 1435 77 HOH HOH . N 6 HOH B 36 1436 80 HOH HOH . N 6 HOH B 37 1437 81 HOH HOH . N 6 HOH B 38 1438 84 HOH HOH . N 6 HOH B 39 1439 85 HOH HOH . N 6 HOH B 40 1440 87 HOH HOH . N 6 HOH B 41 1441 88 HOH HOH . N 6 HOH B 42 1442 96 HOH HOH . N 6 HOH B 43 1443 97 HOH HOH . N 6 HOH B 44 1444 100 HOH HOH . N 6 HOH B 45 1445 102 HOH HOH . N 6 HOH B 46 1446 107 HOH HOH . N 6 HOH B 47 1447 108 HOH HOH . N 6 HOH B 48 1448 112 HOH HOH . N 6 HOH B 49 1449 113 HOH HOH . N 6 HOH B 50 1450 114 HOH HOH . N 6 HOH B 51 1451 117 HOH HOH . N 6 HOH B 52 1452 119 HOH HOH . N 6 HOH B 53 1453 122 HOH HOH . N 6 HOH B 54 1454 124 HOH HOH . N 6 HOH B 55 1455 125 HOH HOH . N 6 HOH B 56 1456 129 HOH HOH . N 6 HOH B 57 1457 135 HOH HOH . N 6 HOH B 58 1458 138 HOH HOH . N 6 HOH B 59 1459 140 HOH HOH . N 6 HOH B 60 1460 142 HOH HOH . N 6 HOH B 61 1461 146 HOH HOH . N 6 HOH B 62 1462 150 HOH HOH . N 6 HOH B 63 1463 152 HOH HOH . N 6 HOH B 64 1464 159 HOH HOH . N 6 HOH B 65 1465 160 HOH HOH . N 6 HOH B 66 1466 161 HOH HOH . N 6 HOH B 67 1467 162 HOH HOH . N 6 HOH B 68 1468 163 HOH HOH . N 6 HOH B 69 1469 164 HOH HOH . N 6 HOH B 70 1470 177 HOH HOH . N 6 HOH B 71 1471 184 HOH HOH . N 6 HOH B 72 1472 185 HOH HOH . N 6 HOH B 73 1473 186 HOH HOH . N 6 HOH B 74 1474 187 HOH HOH . N 6 HOH B 75 1475 192 HOH HOH . N 6 HOH B 76 1476 204 HOH HOH . N 6 HOH B 77 1477 205 HOH HOH . N 6 HOH B 78 1478 206 HOH HOH . N 6 HOH B 79 1479 207 HOH HOH . N 6 HOH B 80 1480 208 HOH HOH . N 6 HOH B 81 1481 209 HOH HOH . N 6 HOH B 82 1482 210 HOH HOH . N 6 HOH B 83 1483 213 HOH HOH . N 6 HOH B 84 1484 214 HOH HOH . N 6 HOH B 85 1485 216 HOH HOH . N 6 HOH B 86 1486 217 HOH HOH . N 6 HOH B 87 1487 218 HOH HOH . N 6 HOH B 88 1488 219 HOH HOH . N 6 HOH B 89 1489 222 HOH HOH . N 6 HOH B 90 1490 234 HOH HOH . N 6 HOH B 91 1491 235 HOH HOH . N 6 HOH B 92 1492 236 HOH HOH . N 6 HOH B 93 1493 237 HOH HOH . N 6 HOH B 94 1494 238 HOH HOH . N 6 HOH B 95 1495 240 HOH HOH . N 6 HOH B 96 1496 242 HOH HOH . N 6 HOH B 97 1497 243 HOH HOH . N 6 HOH B 98 1498 244 HOH HOH . N 6 HOH B 99 1499 245 HOH HOH . N 6 HOH B 100 1500 246 HOH HOH . N 6 HOH B 101 1501 249 HOH HOH . N 6 HOH B 102 1502 251 HOH HOH . N 6 HOH B 103 1503 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 3 5.814 41.736 -29.633 1 16.76 ? P PO4 402 B 1 HETATM 2 O O1 PO4 . . . I 3 5.45 40.408 -29.067 1 20.72 ? O1 PO4 402 B 1 HETATM 3 O O2 PO4 . . . I 3 5.624 42.808 -28.601 1 17.66 ? O2 PO4 402 B 1 HETATM 4 O O3 PO4 . . . I 3 4.944 42.045 -30.818 1 17.29 ? O3 PO4 402 B 1 HETATM 5 O O4 PO4 . . . I 3 7.259 41.738 -30.08 1 18.19 ? O4 PO4 402 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #