data_2OG7 # _model_server_result.job_id p5z9DHvItN3v1enSsrL5VA _model_server_result.datetime_utc '2024-11-26 12:50:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2og7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":6001}' # _entry.id 2OG7 # _exptl.entry_id 2OG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OG7 _cell.length_a 91.308 _cell.length_b 91.308 _cell.length_c 90.867 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 179 A HIS 155 1_555 B FE FE2 . A FE2 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OE1 GLU 181 A GLU 157 1_555 B FE FE2 . A FE2 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 A NE2 HIS 311 A HIS 287 1_555 B FE FE2 . A FE2 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 B FE FE2 . A FE2 5001 1_555 C O2 SIN . A SIN 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 B FE FE2 . A FE2 5001 1_555 C O1 SIN . A SIN 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc6 B FE FE2 . A FE2 5001 1_555 D OB AHB . A AHB 7002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 307 n n C1 O2 SIN sing 308 n n C1 C2 SIN sing 309 n n O2 HO2 SIN sing 310 n n C2 C3 SIN sing 311 n n C2 H21 SIN sing 312 n n C2 H22 SIN sing 313 n n C3 C4 SIN sing 314 n n C3 H31 SIN sing 315 n n C3 H32 SIN sing 316 n n C4 O3 SIN doub 317 n n C4 O4 SIN sing 318 n n O4 HO4 SIN sing 319 n n # _atom_sites.entry_id 2OG7 _atom_sites.fract_transf_matrix[1][1] 0.010952 _atom_sites.fract_transf_matrix[1][2] 0.006323 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 5001 5001 FE2 FE2 . C 3 SIN A 1 6001 6001 SIN SIN . D 4 AHB A 1 7002 7002 AHB AHB . E 5 HOH A 1 7003 2 HOH HOH . E 5 HOH A 2 7004 3 HOH HOH . E 5 HOH A 3 7005 4 HOH HOH . E 5 HOH A 4 7006 5 HOH HOH . E 5 HOH A 5 7007 6 HOH HOH . E 5 HOH A 6 7008 7 HOH HOH . E 5 HOH A 7 7009 8 HOH HOH . E 5 HOH A 8 7010 9 HOH HOH . E 5 HOH A 9 7011 10 HOH HOH . E 5 HOH A 10 7012 11 HOH HOH . E 5 HOH A 11 7013 12 HOH HOH . E 5 HOH A 12 7014 13 HOH HOH . E 5 HOH A 13 7015 14 HOH HOH . E 5 HOH A 14 7016 15 HOH HOH . E 5 HOH A 15 7017 16 HOH HOH . E 5 HOH A 16 7018 17 HOH HOH . E 5 HOH A 17 7019 18 HOH HOH . E 5 HOH A 18 7020 19 HOH HOH . E 5 HOH A 19 7021 20 HOH HOH . E 5 HOH A 20 7022 21 HOH HOH . E 5 HOH A 21 7023 22 HOH HOH . E 5 HOH A 22 7024 23 HOH HOH . E 5 HOH A 23 7025 24 HOH HOH . E 5 HOH A 24 7026 25 HOH HOH . E 5 HOH A 25 7027 26 HOH HOH . E 5 HOH A 26 7028 27 HOH HOH . E 5 HOH A 27 7029 28 HOH HOH . E 5 HOH A 28 7030 29 HOH HOH . E 5 HOH A 29 7031 30 HOH HOH . E 5 HOH A 30 7032 31 HOH HOH . E 5 HOH A 31 7033 32 HOH HOH . E 5 HOH A 32 7034 33 HOH HOH . E 5 HOH A 33 7035 34 HOH HOH . E 5 HOH A 34 7036 35 HOH HOH . E 5 HOH A 35 7037 36 HOH HOH . E 5 HOH A 36 7038 37 HOH HOH . E 5 HOH A 37 7039 38 HOH HOH . E 5 HOH A 38 7040 39 HOH HOH . E 5 HOH A 39 7041 40 HOH HOH . E 5 HOH A 40 7042 41 HOH HOH . E 5 HOH A 41 7043 42 HOH HOH . E 5 HOH A 42 7044 43 HOH HOH . E 5 HOH A 43 7045 44 HOH HOH . E 5 HOH A 44 7046 45 HOH HOH . E 5 HOH A 45 7047 46 HOH HOH . E 5 HOH A 46 7048 47 HOH HOH . E 5 HOH A 47 7049 48 HOH HOH . E 5 HOH A 48 7050 49 HOH HOH . E 5 HOH A 49 7051 50 HOH HOH . E 5 HOH A 50 7052 51 HOH HOH . E 5 HOH A 51 7053 52 HOH HOH . E 5 HOH A 52 7054 53 HOH HOH . E 5 HOH A 53 7055 54 HOH HOH . E 5 HOH A 54 7056 55 HOH HOH . E 5 HOH A 55 7057 56 HOH HOH . E 5 HOH A 56 7058 57 HOH HOH . E 5 HOH A 57 7059 58 HOH HOH . E 5 HOH A 58 7060 59 HOH HOH . E 5 HOH A 59 7061 60 HOH HOH . E 5 HOH A 60 7062 61 HOH HOH . E 5 HOH A 61 7063 62 HOH HOH . E 5 HOH A 62 7064 63 HOH HOH . E 5 HOH A 63 7065 64 HOH HOH . E 5 HOH A 64 7066 65 HOH HOH . E 5 HOH A 65 7067 66 HOH HOH . E 5 HOH A 66 7068 67 HOH HOH . E 5 HOH A 67 7069 68 HOH HOH . E 5 HOH A 68 7070 69 HOH HOH . E 5 HOH A 69 7071 70 HOH HOH . E 5 HOH A 70 7072 71 HOH HOH . E 5 HOH A 71 7073 72 HOH HOH . E 5 HOH A 72 7074 73 HOH HOH . E 5 HOH A 73 7075 74 HOH HOH . E 5 HOH A 74 7076 75 HOH HOH . E 5 HOH A 75 7077 76 HOH HOH . E 5 HOH A 76 7078 77 HOH HOH . E 5 HOH A 77 7079 78 HOH HOH . E 5 HOH A 78 7080 79 HOH HOH . E 5 HOH A 79 7081 80 HOH HOH . E 5 HOH A 80 7082 81 HOH HOH . E 5 HOH A 81 7083 82 HOH HOH . E 5 HOH A 82 7084 83 HOH HOH . E 5 HOH A 83 7085 84 HOH HOH . E 5 HOH A 84 7086 85 HOH HOH . E 5 HOH A 85 7087 86 HOH HOH . E 5 HOH A 86 7088 87 HOH HOH . E 5 HOH A 87 7089 88 HOH HOH . E 5 HOH A 88 7090 89 HOH HOH . E 5 HOH A 89 7091 90 HOH HOH . E 5 HOH A 90 7092 91 HOH HOH . E 5 HOH A 91 7093 92 HOH HOH . E 5 HOH A 92 7094 93 HOH HOH . E 5 HOH A 93 7095 94 HOH HOH . E 5 HOH A 94 7096 95 HOH HOH . E 5 HOH A 95 7097 96 HOH HOH . E 5 HOH A 96 7098 97 HOH HOH . E 5 HOH A 97 7099 98 HOH HOH . E 5 HOH A 98 7100 99 HOH HOH . E 5 HOH A 99 7101 100 HOH HOH . E 5 HOH A 100 7102 102 HOH HOH . E 5 HOH A 101 7103 103 HOH HOH . E 5 HOH A 102 7104 104 HOH HOH . E 5 HOH A 103 7105 105 HOH HOH . E 5 HOH A 104 7106 106 HOH HOH . E 5 HOH A 105 7107 107 HOH HOH . E 5 HOH A 106 7108 108 HOH HOH . E 5 HOH A 107 7109 109 HOH HOH . E 5 HOH A 108 7110 110 HOH HOH . E 5 HOH A 109 7111 111 HOH HOH . E 5 HOH A 110 7112 112 HOH HOH . E 5 HOH A 111 7113 113 HOH HOH . E 5 HOH A 112 7114 114 HOH HOH . E 5 HOH A 113 7115 115 HOH HOH . E 5 HOH A 114 7116 116 HOH HOH . E 5 HOH A 115 7117 117 HOH HOH . E 5 HOH A 116 7118 118 HOH HOH . E 5 HOH A 117 7119 119 HOH HOH . E 5 HOH A 118 7120 120 HOH HOH . E 5 HOH A 119 7121 121 HOH HOH . E 5 HOH A 120 7122 122 HOH HOH . E 5 HOH A 121 7123 123 HOH HOH . E 5 HOH A 122 7124 124 HOH HOH . E 5 HOH A 123 7125 125 HOH HOH . E 5 HOH A 124 7126 126 HOH HOH . E 5 HOH A 125 7127 127 HOH HOH . E 5 HOH A 126 7128 128 HOH HOH . E 5 HOH A 127 7129 129 HOH HOH . E 5 HOH A 128 7130 130 HOH HOH . E 5 HOH A 129 7131 132 HOH HOH . E 5 HOH A 130 7132 133 HOH HOH . E 5 HOH A 131 7133 134 HOH HOH . E 5 HOH A 132 7134 135 HOH HOH . E 5 HOH A 133 7135 136 HOH HOH . E 5 HOH A 134 7136 137 HOH HOH . E 5 HOH A 135 7137 138 HOH HOH . E 5 HOH A 136 7138 139 HOH HOH . E 5 HOH A 137 7139 140 HOH HOH . E 5 HOH A 138 7140 141 HOH HOH . E 5 HOH A 139 7141 142 HOH HOH . E 5 HOH A 140 7142 143 HOH HOH . E 5 HOH A 141 7143 144 HOH HOH . E 5 HOH A 142 7144 145 HOH HOH . E 5 HOH A 143 7145 146 HOH HOH . E 5 HOH A 144 7146 147 HOH HOH . E 5 HOH A 145 7147 148 HOH HOH . E 5 HOH A 146 7148 149 HOH HOH . E 5 HOH A 147 7149 150 HOH HOH . E 5 HOH A 148 7150 151 HOH HOH . E 5 HOH A 149 7151 152 HOH HOH . E 5 HOH A 150 7152 153 HOH HOH . E 5 HOH A 151 7153 154 HOH HOH . E 5 HOH A 152 7154 155 HOH HOH . E 5 HOH A 153 7155 156 HOH HOH . E 5 HOH A 154 7156 157 HOH HOH . E 5 HOH A 155 7157 158 HOH HOH . E 5 HOH A 156 7158 159 HOH HOH . E 5 HOH A 157 7159 160 HOH HOH . E 5 HOH A 158 7160 161 HOH HOH . E 5 HOH A 159 7161 162 HOH HOH . E 5 HOH A 160 7162 163 HOH HOH . E 5 HOH A 161 7163 164 HOH HOH . E 5 HOH A 162 7164 165 HOH HOH . E 5 HOH A 163 7165 166 HOH HOH . E 5 HOH A 164 7166 167 HOH HOH . E 5 HOH A 165 7167 168 HOH HOH . E 5 HOH A 166 7168 169 HOH HOH . E 5 HOH A 167 7169 170 HOH HOH . E 5 HOH A 168 7170 171 HOH HOH . E 5 HOH A 169 7171 172 HOH HOH . E 5 HOH A 170 7172 173 HOH HOH . E 5 HOH A 171 7173 175 HOH HOH . E 5 HOH A 172 7174 176 HOH HOH . E 5 HOH A 173 7175 177 HOH HOH . E 5 HOH A 174 7176 178 HOH HOH . E 5 HOH A 175 7177 179 HOH HOH . E 5 HOH A 176 7178 180 HOH HOH . E 5 HOH A 177 7179 181 HOH HOH . E 5 HOH A 178 7180 182 HOH HOH . E 5 HOH A 179 7181 183 HOH HOH . E 5 HOH A 180 7182 184 HOH HOH . E 5 HOH A 181 7183 185 HOH HOH . E 5 HOH A 182 7184 186 HOH HOH . E 5 HOH A 183 7185 187 HOH HOH . E 5 HOH A 184 7186 188 HOH HOH . E 5 HOH A 185 7187 189 HOH HOH . E 5 HOH A 186 7188 190 HOH HOH . E 5 HOH A 187 7189 191 HOH HOH . E 5 HOH A 188 7190 192 HOH HOH . E 5 HOH A 189 7191 193 HOH HOH . E 5 HOH A 190 7192 194 HOH HOH . E 5 HOH A 191 7193 195 HOH HOH . E 5 HOH A 192 7194 196 HOH HOH . E 5 HOH A 193 7195 197 HOH HOH . E 5 HOH A 194 7196 198 HOH HOH . E 5 HOH A 195 7197 199 HOH HOH . E 5 HOH A 196 7198 200 HOH HOH . E 5 HOH A 197 7199 201 HOH HOH . E 5 HOH A 198 7200 202 HOH HOH . E 5 HOH A 199 7201 203 HOH HOH . E 5 HOH A 200 7202 204 HOH HOH . E 5 HOH A 201 7203 205 HOH HOH . E 5 HOH A 202 7204 206 HOH HOH . E 5 HOH A 203 7205 207 HOH HOH . E 5 HOH A 204 7206 208 HOH HOH . E 5 HOH A 205 7207 209 HOH HOH . E 5 HOH A 206 7208 211 HOH HOH . E 5 HOH A 207 7209 213 HOH HOH . E 5 HOH A 208 7210 214 HOH HOH . E 5 HOH A 209 7211 216 HOH HOH . E 5 HOH A 210 7212 217 HOH HOH . E 5 HOH A 211 7213 218 HOH HOH . E 5 HOH A 212 7214 219 HOH HOH . E 5 HOH A 213 7215 220 HOH HOH . E 5 HOH A 214 7216 221 HOH HOH . E 5 HOH A 215 7217 222 HOH HOH . E 5 HOH A 216 7218 223 HOH HOH . E 5 HOH A 217 7219 224 HOH HOH . E 5 HOH A 218 7220 225 HOH HOH . E 5 HOH A 219 7221 226 HOH HOH . E 5 HOH A 220 7222 227 HOH HOH . E 5 HOH A 221 7223 228 HOH HOH . E 5 HOH A 222 7224 229 HOH HOH . E 5 HOH A 223 7225 230 HOH HOH . E 5 HOH A 224 7226 231 HOH HOH . E 5 HOH A 225 7227 233 HOH HOH . E 5 HOH A 226 7228 234 HOH HOH . E 5 HOH A 227 7229 235 HOH HOH . E 5 HOH A 228 7230 236 HOH HOH . E 5 HOH A 229 7231 237 HOH HOH . E 5 HOH A 230 7232 241 HOH HOH . E 5 HOH A 231 7233 242 HOH HOH . E 5 HOH A 232 7234 244 HOH HOH . E 5 HOH A 233 7235 245 HOH HOH . E 5 HOH A 234 7236 246 HOH HOH . E 5 HOH A 235 7237 248 HOH HOH . E 5 HOH A 236 7238 250 HOH HOH . E 5 HOH A 237 7239 251 HOH HOH . E 5 HOH A 238 7240 252 HOH HOH . E 5 HOH A 239 7241 253 HOH HOH . E 5 HOH A 240 7242 254 HOH HOH . E 5 HOH A 241 7243 255 HOH HOH . E 5 HOH A 242 7244 256 HOH HOH . E 5 HOH A 243 7245 257 HOH HOH . E 5 HOH A 244 7246 258 HOH HOH . E 5 HOH A 245 7247 259 HOH HOH . E 5 HOH A 246 7248 260 HOH HOH . E 5 HOH A 247 7249 261 HOH HOH . E 5 HOH A 248 7250 262 HOH HOH . E 5 HOH A 249 7251 263 HOH HOH . E 5 HOH A 250 7252 264 HOH HOH . E 5 HOH A 251 7253 265 HOH HOH . E 5 HOH A 252 7254 266 HOH HOH . E 5 HOH A 253 7255 267 HOH HOH . E 5 HOH A 254 7256 268 HOH HOH . E 5 HOH A 255 7257 269 HOH HOH . E 5 HOH A 256 7258 270 HOH HOH . E 5 HOH A 257 7259 271 HOH HOH . E 5 HOH A 258 7260 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . C 3 -3.084 57.015 -11.837 1 34.54 ? C1 SIN 6001 A 1 HETATM 2 O O1 SIN . . . C 3 -2.012 56.789 -11.203 1 30.68 ? O1 SIN 6001 A 1 HETATM 3 O O2 SIN . . . C 3 -3.205 58.044 -12.579 1 32.65 ? O2 SIN 6001 A 1 HETATM 4 C C2 SIN . . . C 3 -4.215 56.02 -11.701 1 34.44 ? C2 SIN 6001 A 1 HETATM 5 C C3 SIN . . . C 3 -4.58 55.879 -10.229 1 35.53 ? C3 SIN 6001 A 1 HETATM 6 C C4 SIN . . . C 3 -5.623 54.808 -10.034 1 34.86 ? C4 SIN 6001 A 1 HETATM 7 O O3 SIN . . . C 3 -6.549 54.973 -9.215 1 36.7 ? O3 SIN 6001 A 1 HETATM 8 O O4 SIN . . . C 3 -5.583 53.734 -10.666 1 34.73 ? O4 SIN 6001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #