data_2OH7 # _model_server_result.job_id O2IVBuiALfLqcSVS5ual1Q _model_server_result.datetime_utc '2024-11-07 02:40:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oh7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":254}' # _entry.id 2OH7 # _exptl.entry_id 2OH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OH7 _cell.length_a 102.742 _cell.length_b 102.742 _cell.length_c 102.742 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 102.742 102.742 0 5 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 102.742 102.742 0 6 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 102.742 102.742 0 7 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 102.742 102.742 8 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 102.742 102.742 9 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 102.742 102.742 10 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 102.742 0 102.742 11 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 102.742 0 102.742 12 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0 -1 0 0 0 1 -1 0 0 102.742 0 102.742 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A O GLY 74 A GLY 74 5_555 C MG MG . A MG 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc2 C MG MG . A MG 250 1_555 G O3G CTP . A CTP 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc3 C MG MG . A MG 250 1_555 G O1A CTP . A CTP 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 D MG MG . A MG 251 1_555 F O2G ATP . A ATP 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc5 D MG MG . A MG 251 1_555 F O1A ATP . A ATP 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc6 D MG MG . A MG 251 1_555 F O1B ATP . A ATP 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 125 n n N1 C6 CTP sing 126 n n N1 C1' CTP sing 127 n n C2 N3 CTP sing 128 n n C2 O2 CTP doub 129 n n N3 C4 CTP doub 130 n n C4 C5 CTP sing 131 n n C4 N4 CTP sing 132 n n C5 C6 CTP doub 133 n n C5 H5 CTP sing 134 n n C6 H6 CTP sing 135 n n N4 HN41 CTP sing 136 n n N4 HN42 CTP sing 137 n n C1' C2' CTP sing 138 n n C1' O4' CTP sing 139 n n C1' H1' CTP sing 140 n n C2' O2' CTP sing 141 n n C2' C3' CTP sing 142 n n C2' H2' CTP sing 143 n n O2' HO2' CTP sing 144 n n C3' C4' CTP sing 145 n n C3' O3' CTP sing 146 n n C3' H3' CTP sing 147 n n C4' O4' CTP sing 148 n n C4' C5' CTP sing 149 n n C4' H4' CTP sing 150 n n O3' HO3' CTP sing 151 n n C5' O5' CTP sing 152 n n C5' "H5'1" CTP sing 153 n n C5' "H5'2" CTP sing 154 n n O5' PA CTP sing 155 n n PA O1A CTP doub 156 n n PA O2A CTP sing 157 n n PA O3A CTP sing 158 n n O2A HOA2 CTP sing 159 n n O3A PB CTP sing 160 n n PB O1B CTP doub 161 n n PB O2B CTP sing 162 n n PB O3B CTP sing 163 n n O2B HOB2 CTP sing 164 n n O3B PG CTP sing 165 n n PG O1G CTP doub 166 n n PG O2G CTP sing 167 n n PG O3G CTP sing 168 n n O2G HOG2 CTP sing 169 n n O3G HOG3 CTP sing 170 n n # _atom_sites.entry_id 2OH7 _atom_sites.fract_transf_matrix[1][1] 0.009733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 249 249 CL CL . C 3 MG A 1 250 250 MG MG . D 3 MG A 1 251 251 MG MG . E 4 GTP A 1 252 252 GTP GTP . F 5 ATP A 1 253 253 ATP ATP . G 6 CTP A 1 254 254 CTP CTP . H 7 HOH A 1 255 1 HOH HOH . H 7 HOH A 2 256 2 HOH HOH . H 7 HOH A 3 257 3 HOH HOH . H 7 HOH A 4 258 4 HOH HOH . H 7 HOH A 5 259 5 HOH HOH . H 7 HOH A 6 260 6 HOH HOH . H 7 HOH A 7 261 7 HOH HOH . H 7 HOH A 8 262 8 HOH HOH . H 7 HOH A 9 263 9 HOH HOH . H 7 HOH A 10 264 10 HOH HOH . H 7 HOH A 11 265 11 HOH HOH . H 7 HOH A 12 266 12 HOH HOH . H 7 HOH A 13 267 13 HOH HOH . H 7 HOH A 14 268 14 HOH HOH . H 7 HOH A 15 269 15 HOH HOH . H 7 HOH A 16 270 16 HOH HOH . H 7 HOH A 17 271 17 HOH HOH . H 7 HOH A 18 272 18 HOH HOH . H 7 HOH A 19 273 19 HOH HOH . H 7 HOH A 20 274 20 HOH HOH . H 7 HOH A 21 275 21 HOH HOH . H 7 HOH A 22 276 22 HOH HOH . H 7 HOH A 23 277 23 HOH HOH . H 7 HOH A 24 278 24 HOH HOH . H 7 HOH A 25 279 25 HOH HOH . H 7 HOH A 26 280 26 HOH HOH . H 7 HOH A 27 281 27 HOH HOH . H 7 HOH A 28 282 28 HOH HOH . H 7 HOH A 29 283 29 HOH HOH . H 7 HOH A 30 284 30 HOH HOH . H 7 HOH A 31 285 31 HOH HOH . H 7 HOH A 32 286 32 HOH HOH . H 7 HOH A 33 287 33 HOH HOH . H 7 HOH A 34 288 34 HOH HOH . H 7 HOH A 35 289 35 HOH HOH . H 7 HOH A 36 290 36 HOH HOH . H 7 HOH A 37 291 37 HOH HOH . H 7 HOH A 38 292 38 HOH HOH . H 7 HOH A 39 293 39 HOH HOH . H 7 HOH A 40 294 40 HOH HOH . H 7 HOH A 41 295 41 HOH HOH . H 7 HOH A 42 296 42 HOH HOH . H 7 HOH A 43 297 43 HOH HOH . H 7 HOH A 44 298 44 HOH HOH . H 7 HOH A 45 299 45 HOH HOH . H 7 HOH A 46 300 46 HOH HOH . H 7 HOH A 47 301 47 HOH HOH . H 7 HOH A 48 302 48 HOH HOH . H 7 HOH A 49 303 49 HOH HOH . H 7 HOH A 50 304 50 HOH HOH . H 7 HOH A 51 305 51 HOH HOH . H 7 HOH A 52 306 52 HOH HOH . H 7 HOH A 53 307 53 HOH HOH . H 7 HOH A 54 308 54 HOH HOH . H 7 HOH A 55 309 55 HOH HOH . H 7 HOH A 56 310 56 HOH HOH . H 7 HOH A 57 311 57 HOH HOH . H 7 HOH A 58 312 58 HOH HOH . H 7 HOH A 59 313 59 HOH HOH . H 7 HOH A 60 314 60 HOH HOH . H 7 HOH A 61 315 61 HOH HOH . H 7 HOH A 62 316 62 HOH HOH . H 7 HOH A 63 317 63 HOH HOH . H 7 HOH A 64 318 64 HOH HOH . H 7 HOH A 65 319 65 HOH HOH . H 7 HOH A 66 320 66 HOH HOH . H 7 HOH A 67 321 67 HOH HOH . H 7 HOH A 68 322 68 HOH HOH . H 7 HOH A 69 323 69 HOH HOH . H 7 HOH A 70 324 70 HOH HOH . H 7 HOH A 71 325 71 HOH HOH . H 7 HOH A 72 326 72 HOH HOH . H 7 HOH A 73 327 73 HOH HOH . H 7 HOH A 74 328 74 HOH HOH . H 7 HOH A 75 329 75 HOH HOH . H 7 HOH A 76 330 76 HOH HOH . H 7 HOH A 77 331 77 HOH HOH . H 7 HOH A 78 332 78 HOH HOH . H 7 HOH A 79 333 79 HOH HOH . H 7 HOH A 80 334 80 HOH HOH . H 7 HOH A 81 335 81 HOH HOH . H 7 HOH A 82 336 82 HOH HOH . H 7 HOH A 83 337 83 HOH HOH . H 7 HOH A 84 338 84 HOH HOH . H 7 HOH A 85 339 85 HOH HOH . H 7 HOH A 86 340 86 HOH HOH . H 7 HOH A 87 341 87 HOH HOH . H 7 HOH A 88 342 88 HOH HOH . H 7 HOH A 89 343 89 HOH HOH . H 7 HOH A 90 344 90 HOH HOH . H 7 HOH A 91 345 91 HOH HOH . H 7 HOH A 92 346 92 HOH HOH . H 7 HOH A 93 347 93 HOH HOH . H 7 HOH A 94 348 94 HOH HOH . H 7 HOH A 95 349 95 HOH HOH . H 7 HOH A 96 350 96 HOH HOH . H 7 HOH A 97 351 97 HOH HOH . H 7 HOH A 98 352 98 HOH HOH . H 7 HOH A 99 353 99 HOH HOH . H 7 HOH A 100 354 100 HOH HOH . H 7 HOH A 101 355 101 HOH HOH . H 7 HOH A 102 356 102 HOH HOH . H 7 HOH A 103 357 103 HOH HOH . H 7 HOH A 104 358 104 HOH HOH . H 7 HOH A 105 359 105 HOH HOH . H 7 HOH A 106 360 106 HOH HOH . H 7 HOH A 107 361 107 HOH HOH . H 7 HOH A 108 362 108 HOH HOH . H 7 HOH A 109 363 109 HOH HOH . H 7 HOH A 110 364 110 HOH HOH . H 7 HOH A 111 365 111 HOH HOH . H 7 HOH A 112 366 112 HOH HOH . H 7 HOH A 113 367 113 HOH HOH . H 7 HOH A 114 368 114 HOH HOH . H 7 HOH A 115 369 115 HOH HOH . H 7 HOH A 116 370 116 HOH HOH . H 7 HOH A 117 371 117 HOH HOH . H 7 HOH A 118 372 118 HOH HOH . H 7 HOH A 119 373 119 HOH HOH . H 7 HOH A 120 374 120 HOH HOH . H 7 HOH A 121 375 121 HOH HOH . H 7 HOH A 122 376 122 HOH HOH . H 7 HOH A 123 377 123 HOH HOH . H 7 HOH A 124 378 124 HOH HOH . H 7 HOH A 125 379 125 HOH HOH . H 7 HOH A 126 380 126 HOH HOH . H 7 HOH A 127 381 127 HOH HOH . H 7 HOH A 128 382 128 HOH HOH . H 7 HOH A 129 383 129 HOH HOH . H 7 HOH A 130 384 130 HOH HOH . H 7 HOH A 131 385 131 HOH HOH . H 7 HOH A 132 386 132 HOH HOH . H 7 HOH A 133 387 133 HOH HOH . H 7 HOH A 134 388 134 HOH HOH . H 7 HOH A 135 389 135 HOH HOH . H 7 HOH A 136 390 136 HOH HOH . H 7 HOH A 137 391 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . G 6 42.632 58.19 39.634 1 60.78 ? N1 CTP 254 A 1 HETATM 2 C C2 CTP . . . G 6 41.679 59.214 39.676 1 61.03 ? C2 CTP 254 A 1 HETATM 3 N N3 CTP . . . G 6 41.015 59.594 38.504 1 60.94 ? N3 CTP 254 A 1 HETATM 4 C C4 CTP . . . G 6 41.307 58.949 37.296 1 60.51 ? C4 CTP 254 A 1 HETATM 5 C C5 CTP . . . G 6 42.256 57.933 37.26 1 60.19 ? C5 CTP 254 A 1 HETATM 6 C C6 CTP . . . G 6 42.918 57.552 38.421 1 59.79 ? C6 CTP 254 A 1 HETATM 7 O O2 CTP . . . G 6 41.425 59.777 40.739 1 61.45 ? O2 CTP 254 A 1 HETATM 8 N N4 CTP . . . G 6 40.677 59.309 36.182 1 59.09 ? N4 CTP 254 A 1 HETATM 9 C C1' CTP . . . G 6 43.338 57.784 40.87 1 61.37 ? C1' CTP 254 A 1 HETATM 10 C C2' CTP . . . G 6 42.49 56.762 41.63 1 62.75 ? C2' CTP 254 A 1 HETATM 11 O O2' CTP . . . G 6 41.799 57.415 42.698 1 63.54 ? O2' CTP 254 A 1 HETATM 12 C C3' CTP . . . G 6 43.519 55.789 42.208 1 63.18 ? C3' CTP 254 A 1 HETATM 13 C C4' CTP . . . G 6 44.86 56.344 41.726 1 63.07 ? C4' CTP 254 A 1 HETATM 14 O O4' CTP . . . G 6 44.529 57.06 40.526 1 62.59 ? O4' CTP 254 A 1 HETATM 15 O O3' CTP . . . G 6 43.469 55.834 43.636 1 62.9 ? O3' CTP 254 A 1 HETATM 16 C C5' CTP . . . G 6 45.801 55.186 41.387 1 61.97 ? C5' CTP 254 A 1 HETATM 17 O O5' CTP . . . G 6 45.683 54.817 40.01 1 60.63 ? O5' CTP 254 A 1 HETATM 18 P PA CTP . . . G 6 44.853 53.501 39.598 1 57.6 ? PA CTP 254 A 1 HETATM 19 O O1A CTP . . . G 6 44.075 52.936 40.724 1 54.69 ? O1A CTP 254 A 1 HETATM 20 O O2A CTP . . . G 6 43.926 53.935 38.355 1 55.51 ? O2A CTP 254 A 1 HETATM 21 O O3A CTP . . . G 6 45.932 52.465 39.003 1 58.46 ? O3A CTP 254 A 1 HETATM 22 P PB CTP . . . G 6 47.191 52.011 39.898 1 56.8 ? PB CTP 254 A 1 HETATM 23 O O1B CTP . . . G 6 47.003 52.294 41.339 1 57.03 ? O1B CTP 254 A 1 HETATM 24 O O2B CTP . . . G 6 48.471 52.762 39.275 1 57.76 ? O2B CTP 254 A 1 HETATM 25 O O3B CTP . . . G 6 47.406 50.445 39.593 1 55.48 ? O3B CTP 254 A 1 HETATM 26 P PG CTP . . . G 6 46.207 49.402 39.85 1 50.93 ? PG CTP 254 A 1 HETATM 27 O O1G CTP . . . G 6 45.512 49.007 38.604 1 51.82 ? O1G CTP 254 A 1 HETATM 28 O O2G CTP . . . G 6 46.867 48.151 40.62 1 51.68 ? O2G CTP 254 A 1 HETATM 29 O O3G CTP . . . G 6 45.228 50.109 40.915 1 49.82 ? O3G CTP 254 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #