data_2OHF # _model_server_result.job_id bhZgHEonH2ScqZquS_iJ2g _model_server_result.datetime_utc '2025-07-03 13:59:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9001}' # _entry.id 2OHF # _exptl.entry_id 2OHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OHF _cell.length_a 141.253 _cell.length_b 159.831 _cell.length_c 55.129 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 2OHF _atom_sites.fract_transf_matrix[1][1] 0.007079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACP A 1 9001 9001 ACP ACP . C 3 HOH A 1 9002 1 HOH HOH . C 3 HOH A 2 9003 2 HOH HOH . C 3 HOH A 3 9004 3 HOH HOH . C 3 HOH A 4 9005 4 HOH HOH . C 3 HOH A 5 9006 5 HOH HOH . C 3 HOH A 6 9007 6 HOH HOH . C 3 HOH A 7 9008 7 HOH HOH . C 3 HOH A 8 9009 8 HOH HOH . C 3 HOH A 9 9010 9 HOH HOH . C 3 HOH A 10 9011 10 HOH HOH . C 3 HOH A 11 9012 11 HOH HOH . C 3 HOH A 12 9013 12 HOH HOH . C 3 HOH A 13 9014 13 HOH HOH . C 3 HOH A 14 9015 14 HOH HOH . C 3 HOH A 15 9016 15 HOH HOH . C 3 HOH A 16 9017 16 HOH HOH . C 3 HOH A 17 9018 17 HOH HOH . C 3 HOH A 18 9019 18 HOH HOH . C 3 HOH A 19 9020 19 HOH HOH . C 3 HOH A 20 9021 20 HOH HOH . C 3 HOH A 21 9022 21 HOH HOH . C 3 HOH A 22 9023 22 HOH HOH . C 3 HOH A 23 9024 23 HOH HOH . C 3 HOH A 24 9025 24 HOH HOH . C 3 HOH A 25 9026 25 HOH HOH . C 3 HOH A 26 9027 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . B 2 54.32 44.811 -4.271 1 113.86 ? PG ACP 9001 A 1 HETATM 2 O O1G ACP . . . B 2 55.218 45.728 -5.066 1 114.85 ? O1G ACP 9001 A 1 HETATM 3 O O2G ACP . . . B 2 52.948 44.583 -4.872 1 107.92 ? O2G ACP 9001 A 1 HETATM 4 O O3G ACP . . . B 2 55.014 43.547 -3.826 1 111.42 ? O3G ACP 9001 A 1 HETATM 5 P PB ACP . . . B 2 53.421 44.68 -1.44 1 105.49 ? PB ACP 9001 A 1 HETATM 6 O O1B ACP . . . B 2 54.586 43.744 -1.22 1 98.22 ? O1B ACP 9001 A 1 HETATM 7 O O2B ACP . . . B 2 52.028 44.141 -1.706 1 89.78 ? O2B ACP 9001 A 1 HETATM 8 C C3B ACP . . . B 2 53.995 45.772 -2.773 1 107.6 ? C3B ACP 9001 A 1 HETATM 9 P PA ACP . . . B 2 54.531 46.067 0.719 1 113.59 ? PA ACP 9001 A 1 HETATM 10 O O1A ACP . . . B 2 55.703 46.261 -0.217 1 108.99 ? O1A ACP 9001 A 1 HETATM 11 O O2A ACP . . . B 2 54.74 45.23 1.955 1 113.78 ? O2A ACP 9001 A 1 HETATM 12 O O3A ACP . . . B 2 53.247 45.541 -0.097 1 106.25 ? O3A ACP 9001 A 1 HETATM 13 O O5' ACP . . . B 2 53.917 47.466 1.2 1 115.43 ? O5' ACP 9001 A 1 HETATM 14 C C5' ACP . . . B 2 54.118 48.682 0.495 1 118.1 ? C5' ACP 9001 A 1 HETATM 15 C C4' ACP . . . B 2 53.872 49.803 1.486 1 119.4 ? C4' ACP 9001 A 1 HETATM 16 O O4' ACP . . . B 2 52.537 49.693 1.999 1 118.94 ? O4' ACP 9001 A 1 HETATM 17 C C3' ACP . . . B 2 54.83 49.724 2.674 1 121.66 ? C3' ACP 9001 A 1 HETATM 18 O O3' ACP . . . B 2 55.776 50.801 2.662 1 122.56 ? O3' ACP 9001 A 1 HETATM 19 C C2' ACP . . . B 2 53.929 49.757 3.899 1 122.15 ? C2' ACP 9001 A 1 HETATM 20 O O2' ACP . . . B 2 54.31 50.734 4.868 1 124.6 ? O2' ACP 9001 A 1 HETATM 21 C C1' ACP . . . B 2 52.544 50.088 3.374 1 122.61 ? C1' ACP 9001 A 1 HETATM 22 N N9 ACP . . . B 2 51.554 49.401 4.244 1 123.32 ? N9 ACP 9001 A 1 HETATM 23 C C8 ACP . . . B 2 50.819 48.301 3.983 1 122.99 ? C8 ACP 9001 A 1 HETATM 24 N N7 ACP . . . B 2 50.032 47.986 5.048 1 121.78 ? N7 ACP 9001 A 1 HETATM 25 C C5 ACP . . . B 2 50.271 48.895 6.005 1 122.7 ? C5 ACP 9001 A 1 HETATM 26 C C6 ACP . . . B 2 49.798 49.167 7.376 1 123.61 ? C6 ACP 9001 A 1 HETATM 27 N N6 ACP . . . B 2 48.884 48.382 7.966 1 122.73 ? N6 ACP 9001 A 1 HETATM 28 N N1 ACP . . . B 2 50.306 50.233 8.034 1 123.73 ? N1 ACP 9001 A 1 HETATM 29 C C2 ACP . . . B 2 51.226 51.046 7.477 1 123.17 ? C2 ACP 9001 A 1 HETATM 30 N N3 ACP . . . B 2 51.704 50.855 6.234 1 121.75 ? N3 ACP 9001 A 1 HETATM 31 C C4 ACP . . . B 2 51.273 49.822 5.471 1 122.77 ? C4 ACP 9001 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #